RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 TMEM206Q9H813 350 aa15.46■□□□□ 0.07
USP3-204ENST00000540797 DISC1Q9NRI5 854 aa15.46■□□□□ 0.07
USP3-204ENST00000540797 FBF1Q8TES7 1133 aa15.46■□□□□ 0.07
USP3-204ENST00000540797 ABCD1P33897 745 aa15.46■□□□□ 0.06
USP3-204ENST00000540797 CFAP221Q4G0U5 840 aa15.46■□□□□ 0.06
USP3-204ENST00000540797 TRIM50Q86XT4 487 aa15.46■□□□□ 0.06
USP3-204ENST00000540797 CCDC89Q8N998 374 aa15.46■□□□□ 0.06
USP3-204ENST00000540797 LINC00301Q8NCQ3 95 aa15.46■□□□□ 0.06
USP3-204ENST00000540797 RMDN3Q96TC7 470 aa15.46■□□□□ 0.06
USP3-204ENST00000540797 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.45■□□□□ 0.06
USP3-204ENST00000540797 MARK3P27448 753 aa15.45■□□□□ 0.06
USP3-204ENST00000540797 MFAP3P55082 362 aa15.45■□□□□ 0.06
USP3-204ENST00000540797 DHTKD1Q96HY7 919 aaPredicted RBP15.45■□□□□ 0.06
USP3-204ENST00000540797 PPANQ9NQ55 473 aaKnown RBP15.45■□□□□ 0.06
USP3-204ENST00000540797 SUGT1Q9Y2Z0 365 aa15.45■□□□□ 0.06
USP3-204ENST00000540797 PCDHB6Q9Y5E3 794 aa15.45■□□□□ 0.06
USP3-204ENST00000540797 ALDH3A1P30838 453 aa15.45■□□□□ 0.06
USP3-204ENST00000540797 STXBP2Q15833 593 aa15.45■□□□□ 0.06
USP3-204ENST00000540797 CFAP157Q5JU67 520 aa15.45■□□□□ 0.06
USP3-204ENST00000540797 IFT20Q8IY31 132 aa15.45■□□□□ 0.06
USP3-204ENST00000540797 FAM186BQ8IYM0 893 aa15.45■□□□□ 0.06
USP3-204ENST00000540797 PRDM10Q9NQV6 1147 aa15.45■□□□□ 0.06
USP3-204ENST00000540797 RAB20Q9NX57 234 aa15.45■□□□□ 0.06
USP3-204ENST00000540797 LARGE1O95461 756 aa15.45■□□□□ 0.06
USP3-204ENST00000540797 SLFN14P0C7P3 912 aa15.45■□□□□ 0.06
USP3-204ENST00000540797 CUL4AQ13619 759 aa15.45■□□□□ 0.06
USP3-204ENST00000540797 SF3B3Q15393 1217 aaKnown RBP15.45■□□□□ 0.06
USP3-204ENST00000540797 PPM1EQ8WY54 764 aa15.45■□□□□ 0.06
USP3-204ENST00000540797 PPP1R16BQ96T49 567 aa15.45■□□□□ 0.06
USP3-204ENST00000540797 NKIRAS1Q9NYS0 192 aa15.45■□□□□ 0.06
USP3-204ENST00000540797 PCDHA6Q9UN73 950 aa15.45■□□□□ 0.06
USP3-204ENST00000540797 PCDHA8Q9Y5H6 950 aa15.45■□□□□ 0.06
USP3-204ENST00000540797 INO80Q9ULG1 1556 aaPredicted RBP15.45■□□□□ 0.06
USP3-204ENST00000540797 ATP5DP30049 168 aa15.45■□□□□ 0.06
USP3-204ENST00000540797 PTK2Q05397 1052 aa15.45■□□□□ 0.06
USP3-204ENST00000540797 ITIH3Q06033 890 aa15.45■□□□□ 0.06
USP3-204ENST00000540797 DNAJC21Q5F1R6 531 aaKnown RBP15.45■□□□□ 0.06
USP3-204ENST00000540797 NMT2O60551 498 aa15.44■□□□□ 0.06
USP3-204ENST00000540797 COBLO75128 1261 aa15.44■□□□□ 0.06
USP3-204ENST00000540797 PLA2G4BP0C869 781 aa15.44■□□□□ 0.06
USP3-204ENST00000540797 IRX5P78411 483 aaPredicted RBP15.44■□□□□ 0.06
USP3-204ENST00000540797 CTTNQ14247 550 aaKnown RBP15.44■□□□□ 0.06
USP3-204ENST00000540797 CASC4Q6P4E1 433 aa15.44■□□□□ 0.06
USP3-204ENST00000540797 CACTINQ8WUQ7 758 aaKnown RBP15.44■□□□□ 0.06
USP3-204ENST00000540797 P2RX5Q93086 422 aa15.44■□□□□ 0.06
USP3-204ENST00000540797 CHAMP1Q96JM3 812 aa15.44■□□□□ 0.06
USP3-204ENST00000540797 TIGD1Q96MW7 591 aa15.44■□□□□ 0.06
USP3-204ENST00000540797 TRERF1Q96PN7 1200 aa15.44■□□□□ 0.06
USP3-204ENST00000540797 PCIF1Q9H4Z3 704 aa15.44■□□□□ 0.06
USP3-204ENST00000540797 RIC8AQ9NPQ8 531 aa15.44■□□□□ 0.06
USP3-204ENST00000540797 NEXMIFQ5QGS0 1516 aa15.44■□□□□ 0.06
USP3-204ENST00000540797 PIK3C2BO00750 1634 aa15.44■□□□□ 0.06
USP3-204ENST00000540797 MYL3P08590 195 aa15.44■□□□□ 0.06
USP3-204ENST00000540797 BPIFB4P59827 614 aa15.44■□□□□ 0.06
USP3-204ENST00000540797 METTL23Q86XA0 190 aa15.44■□□□□ 0.06
USP3-204ENST00000540797 FTOQ9C0B1 505 aaKnown RBP eCLIP15.44■□□□□ 0.06
USP3-204ENST00000540797 PARVGQ9HBI0 331 aa15.44■□□□□ 0.06
USP3-204ENST00000540797 DIP2AQ14689 1571 aa15.44■□□□□ 0.06
USP3-204ENST00000540797 COPB1P53618 953 aaKnown RBP15.44■□□□□ 0.06
USP3-204ENST00000540797 CYB5R4Q7L1T6 521 aa15.44■□□□□ 0.06
USP3-204ENST00000540797 MICALL2Q8IY33 904 aa15.44■□□□□ 0.06
USP3-204ENST00000540797 TUBGCP2Q9BSJ2 902 aa15.44■□□□□ 0.06
USP3-204ENST00000540797 PCDHB4Q9Y5E5 795 aa15.44■□□□□ 0.06
USP3-204ENST00000540797 CD163L1Q9NR16 1453 aa15.44■□□□□ 0.06
USP3-204ENST00000540797 IVLP07476 585 aa15.44■□□□□ 0.06
USP3-204ENST00000540797 LONRF2Q1L5Z9 754 aa15.44■□□□□ 0.06
USP3-204ENST00000540797 TRIM7Q9C029 511 aa15.44■□□□□ 0.06
USP3-204ENST00000540797 CPVLQ9H3G5 476 aa15.44■□□□□ 0.06
USP3-204ENST00000540797 CLIC2O15247 247 aa15.44■□□□□ 0.06
USP3-204ENST00000540797 NSFP46459 744 aaKnown RBP15.44■□□□□ 0.06
USP3-204ENST00000540797 ITPK1Q13572 414 aa15.44■□□□□ 0.06
USP3-204ENST00000540797 HDXQ7Z353 690 aa15.44■□□□□ 0.06
USP3-204ENST00000540797 ZBTB33Q86T24 672 aa15.44■□□□□ 0.06
USP3-204ENST00000540797 RNF146Q9NTX7 359 aa15.44■□□□□ 0.06
USP3-204ENST00000540797 SRPRBQ9Y5M8 271 aaKnown RBP15.44■□□□□ 0.06
USP3-204ENST00000540797 MYL1P05976 194 aa15.43■□□□□ 0.06
USP3-204ENST00000540797 TFAMQ00059 246 aaKnown RBP15.43■□□□□ 0.06
USP3-204ENST00000540797 ENAHQ8N8S7 591 aaPredicted RBP15.43■□□□□ 0.06
USP3-204ENST00000540797 ANKS4BQ8N8V4 417 aa15.43■□□□□ 0.06
USP3-204ENST00000540797 CARD6Q9BX69 1037 aa15.43■□□□□ 0.06
USP3-204ENST00000540797 HERC5Q9UII4 1024 aaKnown RBP15.43■□□□□ 0.06
USP3-204ENST00000540797 PLCG1P19174 1290 aa15.43■□□□□ 0.06
USP3-204ENST00000540797 MTMR1Q13613 665 aa15.43■□□□□ 0.06
USP3-204ENST00000540797 ALX1Q15699 326 aa15.43■□□□□ 0.06
USP3-204ENST00000540797 STRIP1Q5VSL9 837 aa15.43■□□□□ 0.06
USP3-204ENST00000540797 ERO1AQ96HE7 468 aa15.43■□□□□ 0.06
USP3-204ENST00000540797 UBN2Q6ZU65 1347 aa15.43■□□□□ 0.06
USP3-204ENST00000540797 F5H6K3 240 aa15.43■□□□□ 0.06
USP3-204ENST00000540797 CD2BP2O95400 341 aaKnown RBP15.43■□□□□ 0.06
USP3-204ENST00000540797 SRGAP2CP0DJJ0 459 aa15.43■□□□□ 0.06
USP3-204ENST00000540797 KLRC3Q07444 240 aa15.43■□□□□ 0.06
USP3-204ENST00000540797 GEN1Q17RS7 908 aa15.43■□□□□ 0.06
USP3-204ENST00000540797 RABL6Q3YEC7 729 aaPredicted RBP15.43■□□□□ 0.06
USP3-204ENST00000540797 ZNF710Q8N1W2 664 aa15.43■□□□□ 0.06
USP3-204ENST00000540797 CEP63Q96MT8 703 aa15.43■□□□□ 0.06
USP3-204ENST00000540797 FEZ2Q9UHY8 353 aaPredicted RBP15.43■□□□□ 0.06
USP3-204ENST00000540797 JAK3P52333 1124 aa15.43■□□□□ 0.06
USP3-204ENST00000540797 GRAMD1CQ8IYS0 662 aa15.43■□□□□ 0.06
USP3-204ENST00000540797 CCT6BQ92526 530 aa15.43■□□□□ 0.06
USP3-204ENST00000540797 SMC6Q96SB8 1091 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms