RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 MTF1Q14872 753 aa11.94□□□□□ -0.5
CLIP1-213ENST00000540338 SLC9C1Q4G0N8 1177 aa11.94□□□□□ -0.5
CLIP1-213ENST00000540338 TPH2Q8IWU9 490 aa11.94□□□□□ -0.5
CLIP1-213ENST00000540338 SLC35F6Q8N357 371 aa11.94□□□□□ -0.5
CLIP1-213ENST00000540338 CCDC102AQ96A19 550 aa11.94□□□□□ -0.5
CLIP1-213ENST00000540338 CAPZA3Q96KX2 299 aa11.94□□□□□ -0.5
CLIP1-213ENST00000540338 RHOXF2Q9BQY4 288 aa11.94□□□□□ -0.5
CLIP1-213ENST00000540338 NUCKS1Q9H1E3 243 aaKnown RBP11.94□□□□□ -0.5
CLIP1-213ENST00000540338 MYO3BQ8WXR4 1341 aa11.94□□□□□ -0.5
CLIP1-213ENST00000540338 GAS7O60861 476 aa11.94□□□□□ -0.5
CLIP1-213ENST00000540338 MAGEA1P43355 309 aa11.94□□□□□ -0.5
CLIP1-213ENST00000540338 CYP4A11Q02928 519 aa11.94□□□□□ -0.5
CLIP1-213ENST00000540338 RAPGEF1Q13905 1077 aa11.94□□□□□ -0.5
CLIP1-213ENST00000540338 NPY5RQ15761 445 aa11.94□□□□□ -0.5
CLIP1-213ENST00000540338 DCAF17Q5H9S7 520 aaPredicted RBP11.94□□□□□ -0.5
CLIP1-213ENST00000540338 SECISBP2LQ93073 1101 aaKnown RBP11.94□□□□□ -0.5
CLIP1-213ENST00000540338 MRPL44Q9H9J2 332 aaKnown RBP11.94□□□□□ -0.5
CLIP1-213ENST00000540338 RNF216Q9NWF9 866 aaPredicted RBP11.94□□□□□ -0.5
CLIP1-213ENST00000540338 SERPINA10Q9UK55 444 aa11.94□□□□□ -0.5
CLIP1-213ENST00000540338 POLR3GO15318 223 aaPredicted RBP11.94□□□□□ -0.5
CLIP1-213ENST00000540338 FXR1P51114 621 aaKnown RBP eCLIP11.94□□□□□ -0.5
CLIP1-213ENST00000540338 FXR2P51116 673 aaKnown RBP eCLIP11.94□□□□□ -0.52e-6■■■■■ 27.8
CLIP1-213ENST00000540338 DNA2P51530 1060 aa11.94□□□□□ -0.5
CLIP1-213ENST00000540338 ARHGAP4P98171 946 aa11.94□□□□□ -0.5
CLIP1-213ENST00000540338 STK4Q13043 487 aa11.94□□□□□ -0.5
CLIP1-213ENST00000540338 PABPC4Q13310 644 aaKnown RBP eCLIP11.94□□□□□ -0.5
CLIP1-213ENST00000540338 ANKRD40Q6AI12 368 aa11.94□□□□□ -0.5
CLIP1-213ENST00000540338 GUF1Q8N442 669 aaKnown RBP11.94□□□□□ -0.5
CLIP1-213ENST00000540338 EHD4Q9H223 541 aa11.94□□□□□ -0.5
CLIP1-213ENST00000540338 NDST4Q9H3R1 872 aa11.94□□□□□ -0.5
CLIP1-213ENST00000540338 NLRC4Q9NPP4 1024 aa11.94□□□□□ -0.5
CLIP1-213ENST00000540338 TTC26A0AVF1 554 aa11.93□□□□□ -0.5
CLIP1-213ENST00000540338 ENTPD3O75355 529 aa11.93□□□□□ -0.5
CLIP1-213ENST00000540338 POLD1P28340 1107 aa11.93□□□□□ -0.5
CLIP1-213ENST00000540338 SHMT1P34896 483 aa11.93□□□□□ -0.5
CLIP1-213ENST00000540338 ADAM9Q13443 819 aa11.93□□□□□ -0.5
CLIP1-213ENST00000540338 WHAMMP3Q1A5X7 153 aa11.93□□□□□ -0.5
CLIP1-213ENST00000540338 COL16A1Q07092 1604 aaPredicted RBP11.93□□□□□ -0.5
CLIP1-213ENST00000540338 ANKRD36CQ5JPF3 1778 aa11.93□□□□□ -0.5
CLIP1-213ENST00000540338 AKAP11Q9UKA4 1901 aa11.93□□□□□ -0.5
CLIP1-213ENST00000540338 GCNT3O95395 438 aa11.93□□□□□ -0.5
CLIP1-213ENST00000540338 NOP2P46087 812 aaKnown RBP11.93□□□□□ -0.5
CLIP1-213ENST00000540338 GRIPAP1Q4V328 841 aa11.93□□□□□ -0.5
CLIP1-213ENST00000540338 IFIH1Q9BYX4 1025 aaKnown RBP11.93□□□□□ -0.5
CLIP1-213ENST00000540338 PLCH1Q4KWH8 1693 aa11.93□□□□□ -0.5
CLIP1-213ENST00000540338 PLSCR1O15162 318 aa11.93□□□□□ -0.5
CLIP1-213ENST00000540338 ONECUT3O60422 494 aaPredicted RBP11.93□□□□□ -0.5
CLIP1-213ENST00000540338 IL17AQ16552 155 aa11.93□□□□□ -0.5
CLIP1-213ENST00000540338 VWA3BQ502W6 1294 aa11.93□□□□□ -0.5
CLIP1-213ENST00000540338 PPP4R3AQ6IN85 833 aa11.93□□□□□ -0.5
CLIP1-213ENST00000540338 CPXCR1Q8N123 301 aa11.93□□□□□ -0.5
CLIP1-213ENST00000540338 CERS5Q8N5B7 392 aa11.93□□□□□ -0.5
CLIP1-213ENST00000540338 MYCT1Q8N699 235 aa11.93□□□□□ -0.5
CLIP1-213ENST00000540338 KCND1Q9NSA2 647 aa11.93□□□□□ -0.5
CLIP1-213ENST00000540338 HOXA13P31271 388 aaPredicted RBP11.93□□□□□ -0.5
CLIP1-213ENST00000540338 CACNB1Q02641 598 aaPredicted RBP11.93□□□□□ -0.5
CLIP1-213ENST00000540338 TBX2Q13207 712 aaPredicted RBP11.93□□□□□ -0.5
CLIP1-213ENST00000540338 SFMBT2Q5VUG0 894 aa11.93□□□□□ -0.5
CLIP1-213ENST00000540338 APOBEC3HQ6NTF7 200 aaKnown RBP11.93□□□□□ -0.5
CLIP1-213ENST00000540338 REXO1L1PQ8IX06 675 aa11.93□□□□□ -0.5
CLIP1-213ENST00000540338 CRACR2AQ9BSW2 395 aa11.93□□□□□ -0.5
CLIP1-213ENST00000540338 PKD2L1Q9P0L9 805 aa11.93□□□□□ -0.5
CLIP1-213ENST00000540338 HERC5Q9UII4 1024 aaKnown RBP11.93□□□□□ -0.5
CLIP1-213ENST00000540338 COL4A3BPQ9Y5P4 624 aa11.93□□□□□ -0.5
CLIP1-213ENST00000540338 MYH7P12883 1935 aa11.93□□□□□ -0.5
CLIP1-213ENST00000540338 GYPCP04921 128 aa11.92□□□□□ -0.5
CLIP1-213ENST00000540338 SLC51AQ86UW1 340 aa11.92□□□□□ -0.5
CLIP1-213ENST00000540338 CCDC170Q8IYT3 715 aa11.92□□□□□ -0.5
CLIP1-213ENST00000540338 RABGGTAQ92696 567 aa11.92□□□□□ -0.5
CLIP1-213ENST00000540338 EMILIN3Q9NT22 766 aa11.92□□□□□ -0.5
CLIP1-213ENST00000540338 MYO6Q9UM54 1294 aa11.92□□□□□ -0.5
CLIP1-213ENST00000540338 COL22A1Q8NFW1 1626 aaPredicted RBP11.92□□□□□ -0.5
CLIP1-213ENST00000540338 ARHGEF35A5YM69 484 aa11.92□□□□□ -0.5
CLIP1-213ENST00000540338 MYMKA6NI61 221 aa11.92□□□□□ -0.5
CLIP1-213ENST00000540338 E9PMD0 336 aa11.92□□□□□ -0.5
CLIP1-213ENST00000540338 NDUFB10O96000 172 aa11.92□□□□□ -0.5
CLIP1-213ENST00000540338 KRT13P13646 458 aa11.92□□□□□ -0.5
CLIP1-213ENST00000540338 IFI16Q16666 785 aaKnown RBP11.92□□□□□ -0.5
CLIP1-213ENST00000540338 SRGAP1Q7Z6B7 1085 aa11.92□□□□□ -0.5
CLIP1-213ENST00000540338 ANKRD7Q92527 254 aa11.92□□□□□ -0.5
CLIP1-213ENST00000540338 ARMCX3Q9UH62 379 aaPredicted RBP11.92□□□□□ -0.5
CLIP1-213ENST00000540338 RABGAP1Q9Y3P9 1069 aa11.92□□□□□ -0.5
CLIP1-213ENST00000540338 SAR1BQ9Y6B6 198 aa11.92□□□□□ -0.5
CLIP1-213ENST00000540338 MEIS1O00470 390 aa11.92□□□□□ -0.5
CLIP1-213ENST00000540338 SLC37A4O43826 429 aa11.92□□□□□ -0.5
CLIP1-213ENST00000540338 MATR3P43243 847 aaKnown RBP eCLIP11.92□□□□□ -0.5
CLIP1-213ENST00000540338 TNFAIP1Q13829 316 aa11.92□□□□□ -0.5
CLIP1-213ENST00000540338 GPIHBP1Q8IV16 184 aa11.92□□□□□ -0.5
CLIP1-213ENST00000540338 HPS3Q969F9 1004 aa11.92□□□□□ -0.5
CLIP1-213ENST00000540338 FAM20AQ96MK3 541 aa11.92□□□□□ -0.5
CLIP1-213ENST00000540338 LSM14BQ9BX40 385 aaKnown RBP11.92□□□□□ -0.5
CLIP1-213ENST00000540338 CCDC172P0C7W6 258 aa11.91□□□□□ -0.5
CLIP1-213ENST00000540338 LRCH2Q5VUJ6 765 aa11.91□□□□□ -0.5
CLIP1-213ENST00000540338 RAD9BQ6WBX8 426 aa11.91□□□□□ -0.5
CLIP1-213ENST00000540338 C4orf32Q8N8J7 132 aa11.91□□□□□ -0.5
CLIP1-213ENST00000540338 WDR24Q96S15 920 aa11.91□□□□□ -0.5
CLIP1-213ENST00000540338 INTS13Q9NVM9 706 aa11.91□□□□□ -0.5
CLIP1-213ENST00000540338 SHANK3Q9BYB0 1731 aa11.91□□□□□ -0.5
CLIP1-213ENST00000540338 DUOX1Q9NRD9 1551 aa11.91□□□□□ -0.5
CLIP1-213ENST00000540338 CAPN11Q9UMQ6 739 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms