RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 ANKRD65E5RJM6 399 aa11.04□□□□□ -0.64
TRAF1-202ENST00000540010 ATP1A2P50993 1020 aa11.04□□□□□ -0.64
TRAF1-202ENST00000540010 ABCB5Q2M3G0 1257 aa11.04□□□□□ -0.64
TRAF1-202ENST00000540010 TTC19Q6DKK2 380 aaPredicted RBP11.04□□□□□ -0.64
TRAF1-202ENST00000540010 SERPINA10Q9UK55 444 aa11.04□□□□□ -0.64
TRAF1-202ENST00000540010 PCDHA6Q9UN73 950 aa11.04□□□□□ -0.64
TRAF1-202ENST00000540010 PCDHA8Q9Y5H6 950 aa11.04□□□□□ -0.64
TRAF1-202ENST00000540010 CEP104O60308 925 aa11.04□□□□□ -0.64
TRAF1-202ENST00000540010 PRR29P0C7W0 189 aa11.04□□□□□ -0.64
TRAF1-202ENST00000540010 EZRP15311 586 aaKnown RBP11.04□□□□□ -0.64
TRAF1-202ENST00000540010 SHMT1P34896 483 aa11.04□□□□□ -0.64
TRAF1-202ENST00000540010 ZRSR2Q15696 482 aaKnown RBP11.04□□□□□ -0.64
TRAF1-202ENST00000540010 GPATCH4Q5T3I0 446 aaKnown RBP11.04□□□□□ -0.64
TRAF1-202ENST00000540010 KANSL2Q9H9L4 492 aa11.04□□□□□ -0.64
TRAF1-202ENST00000540010 EPN1Q9Y6I3 576 aaPredicted RBP11.04□□□□□ -0.64
TRAF1-202ENST00000540010 WNT7AO00755 349 aa11.04□□□□□ -0.64
TRAF1-202ENST00000540010 GUCY2FP51841 1108 aa11.04□□□□□ -0.64
TRAF1-202ENST00000540010 HDLBPQ00341 1268 aaKnown RBP11.04□□□□□ -0.64
TRAF1-202ENST00000540010 HERC4Q5GLZ8 1057 aaPredicted RBP11.04□□□□□ -0.64
TRAF1-202ENST00000540010 JDP2Q8WYK2 163 aa11.04□□□□□ -0.64
TRAF1-202ENST00000540010 LRWD1Q9UFC0 647 aa11.04□□□□□ -0.64
TRAF1-202ENST00000540010 RGS17Q9UGC6 210 aaPredicted RBP11.04□□□□□ -0.64
TRAF1-202ENST00000540010 MAN1B1Q9UKM7 699 aa11.04□□□□□ -0.64
TRAF1-202ENST00000540010 DDTLA6NHG4 134 aaPredicted RBP11.03□□□□□ -0.64
TRAF1-202ENST00000540010 SLFN14P0C7P3 912 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 TUBB2AQ13885 445 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 MORC3Q14149 939 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 SPATA1Q5VX52 437 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 SLFN13Q68D06 897 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 PLA2G4DQ86XP0 818 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 FOXP4Q8IVH2 680 aaPredicted RBP11.03□□□□□ -0.64
TRAF1-202ENST00000540010 TUBB2BQ9BVA1 445 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 PARD6BQ9BYG5 372 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 CDC23Q9UJX2 597 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 SOWAHDA6NJG2 315 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 CDC25BP30305 580 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 SEPT2Q15019 361 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 STXBP4Q6ZWJ1 553 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 NEK8Q86SG6 692 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 RABGGTAQ92696 567 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 KCNK9Q9NPC2 374 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 TUBE1Q9UJT0 475 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 KIF4AO95239 1232 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 EEF2P13639 858 aaKnown RBP11.03□□□□□ -0.64
TRAF1-202ENST00000540010 GABPAQ06546 454 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 NPY5RQ15761 445 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 TTBK2Q6IQ55 1244 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 CNNM4Q6P4Q7 775 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 CCDC174Q6PII3 467 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 HS2ST1Q7LGA3 356 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 BCAS4Q8TDM0 211 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 TBCKQ8TEA7 893 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 LMBR1Q8WVP7 490 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 NOX5Q96PH1 765 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.03□□□□□ -0.64
TRAF1-202ENST00000540010 ZBTB12Q9Y330 459 aaPredicted RBP11.03□□□□□ -0.64
TRAF1-202ENST00000540010 SNED1Q8TER0 1413 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 PNMA6AP0CW24 399 aaPredicted RBP11.03□□□□□ -0.64
TRAF1-202ENST00000540010 CASP1P29466 404 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 LONP1P36776 959 aaKnown RBP11.03□□□□□ -0.64
TRAF1-202ENST00000540010 MRPL12P52815 198 aaKnown RBP11.03□□□□□ -0.64
TRAF1-202ENST00000540010 IRX3P78415 501 aaPredicted RBP11.03□□□□□ -0.64
TRAF1-202ENST00000540010 RBL2Q08999 1139 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 SLC9C1Q4G0N8 1177 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 ACRBPQ8NEB7 543 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 SNX29Q8TEQ0 813 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 FBF1Q8TES7 1133 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 TNFRSF25Q93038 417 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 TSGA10Q9BZW7 698 aa11.03□□□□□ -0.64
TRAF1-202ENST00000540010 FAM237AA0A1B0GTK4 181 aa11.02□□□□□ -0.64
TRAF1-202ENST00000540010 SPDYE3A6NKU9 549 aa11.02□□□□□ -0.64
TRAF1-202ENST00000540010 BUB1O43683 1085 aa11.02□□□□□ -0.64
TRAF1-202ENST00000540010 VIMP08670 466 aaKnown RBP11.02□□□□□ -0.64
TRAF1-202ENST00000540010 CCDC172P0C7W6 258 aa11.02□□□□□ -0.64
TRAF1-202ENST00000540010 ZNF543Q08ER8 600 aa11.02□□□□□ -0.64
TRAF1-202ENST00000540010 TERF2Q15554 542 aa11.02□□□□□ -0.64
TRAF1-202ENST00000540010 KMT5BQ4FZB7 885 aa11.02□□□□□ -0.64
TRAF1-202ENST00000540010 SARM1Q6SZW1 724 aa11.02□□□□□ -0.64
TRAF1-202ENST00000540010 GBP6Q6ZN66 633 aa11.02□□□□□ -0.64
TRAF1-202ENST00000540010 SRGAP1Q7Z6B7 1085 aa11.02□□□□□ -0.64
TRAF1-202ENST00000540010 ANKS4BQ8N8V4 417 aa11.02□□□□□ -0.64
TRAF1-202ENST00000540010 PRMT6Q96LA8 375 aaPredicted RBP11.02□□□□□ -0.64
TRAF1-202ENST00000540010 KCNF1Q9H3M0 494 aa11.02□□□□□ -0.64
TRAF1-202ENST00000540010 LIG3P49916 1009 aa11.02□□□□□ -0.65
TRAF1-202ENST00000540010 PLCB3Q01970 1234 aa11.02□□□□□ -0.65
TRAF1-202ENST00000540010 ARL6IP4Q66PJ3 421 aaKnown RBP11.02□□□□□ -0.65
TRAF1-202ENST00000540010 KCTD16Q68DU8 428 aa11.02□□□□□ -0.65
TRAF1-202ENST00000540010 CABP7Q86V35 215 aa11.02□□□□□ -0.65
TRAF1-202ENST00000540010 ADGRF4Q8IZF3 695 aa11.02□□□□□ -0.65
TRAF1-202ENST00000540010 PAGE5Q96GU1 130 aa11.02□□□□□ -0.65
TRAF1-202ENST00000540010 BPIFA3Q9BQP9 254 aa11.02□□□□□ -0.65
TRAF1-202ENST00000540010 ZMYND12Q9H0C1 365 aa11.02□□□□□ -0.65
TRAF1-202ENST00000540010 PPANQ9NQ55 473 aaKnown RBP11.02□□□□□ -0.65
TRAF1-202ENST00000540010 ZBTB21Q9ULJ3 1066 aa11.02□□□□□ -0.65
TRAF1-202ENST00000540010 FAN1Q9Y2M0 1017 aa11.02□□□□□ -0.65
TRAF1-202ENST00000540010 IKBKBO14920 756 aa11.02□□□□□ -0.65
TRAF1-202ENST00000540010 FKBP1AP62942 108 aaKnown RBP11.02□□□□□ -0.65
TRAF1-202ENST00000540010 TMEM260Q9NX78 707 aa11.02□□□□□ -0.65
TRAF1-202ENST00000540010 FAM198AQ9UFP1 575 aa11.02□□□□□ -0.65
TRAF1-202ENST00000540010 PNMA6FA0A0J9YX94 578 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms