RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 RNF169Q8NCN4 708 aa10.79□□□□□ -0.68
COL4A6-208ENST00000538570 PNMA1Q8ND90 353 aa10.79□□□□□ -0.68
COL4A6-208ENST00000538570 PPWD1Q96BP3 646 aaKnown RBP10.79□□□□□ -0.68
COL4A6-208ENST00000538570 MAN1A2O60476 641 aa10.79□□□□□ -0.68
COL4A6-208ENST00000538570 CCDC159P0C7I6 412 aa10.79□□□□□ -0.68
COL4A6-208ENST00000538570 ALAS1P13196 640 aa10.79□□□□□ -0.68
COL4A6-208ENST00000538570 CTSWP56202 376 aa10.79□□□□□ -0.68
COL4A6-208ENST00000538570 SMCR8Q8TEV9 937 aaPredicted RBP10.79□□□□□ -0.68
COL4A6-208ENST00000538570 LGR6Q9HBX8 967 aa10.79□□□□□ -0.68
COL4A6-208ENST00000538570 RTEL1Q9NZ71 1219 aa10.79□□□□□ -0.68
COL4A6-208ENST00000538570 CLIC4Q9Y696 253 aa10.79□□□□□ -0.68
COL4A6-208ENST00000538570 CASP14P31944 242 aa10.79□□□□□ -0.68
COL4A6-208ENST00000538570 POLGP54098 1239 aaPredicted RBP10.79□□□□□ -0.68
COL4A6-208ENST00000538570 PTH1RQ03431 593 aa10.79□□□□□ -0.68
COL4A6-208ENST00000538570 PLA2G4DQ86XP0 818 aa10.79□□□□□ -0.68
COL4A6-208ENST00000538570 NIM1KQ8IY84 436 aa10.79□□□□□ -0.68
COL4A6-208ENST00000538570 EFHD1Q9BUP0 239 aa10.79□□□□□ -0.68
COL4A6-208ENST00000538570 UHRF1BP1Q6BDS2 1440 aa10.79□□□□□ -0.68
COL4A6-208ENST00000538570 FAM133BQ5BKY9 247 aaKnown RBP10.78□□□□□ -0.68
COL4A6-208ENST00000538570 ARHGEF18Q6ZSZ5 1173 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 TUBGCP2Q9BSJ2 902 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 TUBB6Q9BUF5 446 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 PCDHB4Q9Y5E5 795 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 EDC4Q6P2E9 1401 aaKnown RBP10.78□□□□□ -0.68
COL4A6-208ENST00000538570 TNKSO95271 1327 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 SYNJ2BP-COX16A0A087WUM0 186 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 NEURL1BA8MQ27 555 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 KLRF2D3W0D1 207 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 CHUKO15111 745 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 MAP3K7O43318 606 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 ALDH1B1P30837 517 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 MCUQ8NE86 351 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 GPKOWQ92917 476 aaPredicted RBP eCLIP10.78□□□□□ -0.68
COL4A6-208ENST00000538570 CCDC124Q96CT7 223 aaKnown RBP10.78□□□□□ -0.68
COL4A6-208ENST00000538570 CHMP6Q96FZ7 201 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 FAM193BQ96PV7 902 aaPredicted RBP10.78□□□□□ -0.68
COL4A6-208ENST00000538570 HINFPQ9BQA5 517 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 CUEDC2Q9H467 287 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 DISC1Q9NRI5 854 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 GEMIN8Q9NWZ8 242 aaKnown RBP10.78□□□□□ -0.68
COL4A6-208ENST00000538570 COX16Q9P0S2 106 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 DAAM1Q9Y4D1 1078 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 ADCY9O60503 1353 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 NPC1L1Q9UHC9 1359 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 A0A0D9SFI3 127 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 CLCN6P51797 869 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 BASP1P80723 227 aaKnown RBP10.78□□□□□ -0.68
COL4A6-208ENST00000538570 SLC17A8Q8NDX2 589 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 NT5C1BQ96P26 610 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.78□□□□□ -0.68
COL4A6-208ENST00000538570 TLR3O15455 904 aaKnown RBP10.78□□□□□ -0.68
COL4A6-208ENST00000538570 MSH2P43246 934 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 PTGDRQ13258 359 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 TCIRG1Q13488 830 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 ACBD5Q5T8D3 534 aaPredicted RBP10.78□□□□□ -0.68
COL4A6-208ENST00000538570 SESTD1Q86VW0 696 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 KLHL29Q96CT2 875 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 CCDC138Q96M89 665 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 SORBS3O60504 671 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 CPP00450 1065 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 ADD1P35611 737 aaKnown RBP10.78□□□□□ -0.68
COL4A6-208ENST00000538570 IQCB1Q15051 598 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 FAM47CQ5HY64 1035 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 ANKRD13CQ8N6S4 541 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 GPT2Q8TD30 523 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 EPB41L5Q9HCM4 733 aa10.78□□□□□ -0.68
COL4A6-208ENST00000538570 THRAP3Q9Y2W1 955 aaKnown RBP10.78□□□□□ -0.68
COL4A6-208ENST00000538570 DNMT1P26358 1616 aaKnown RBP10.78□□□□□ -0.68
COL4A6-208ENST00000538570 ADGRL2O95490 1459 aa10.77□□□□□ -0.68
COL4A6-208ENST00000538570 LRRIQ4A6NIV6 560 aa10.77□□□□□ -0.68
COL4A6-208ENST00000538570 GSTA4O15217 222 aa10.77□□□□□ -0.68
COL4A6-208ENST00000538570 TSTA3Q13630 321 aaPredicted RBP10.77□□□□□ -0.68
COL4A6-208ENST00000538570 TMED2Q15363 201 aa10.77□□□□□ -0.68
COL4A6-208ENST00000538570 BBS5Q8N3I7 341 aa10.77□□□□□ -0.68
COL4A6-208ENST00000538570 NRBP2Q9NSY0 501 aa10.77□□□□□ -0.68
COL4A6-208ENST00000538570 NOP53Q9NZM5 478 aaKnown RBP10.77□□□□□ -0.68
COL4A6-208ENST00000538570 STK17AQ9UEE5 414 aa10.77□□□□□ -0.68
COL4A6-208ENST00000538570 COL17A1Q9UMD9 1497 aaPredicted RBP10.77□□□□□ -0.68
COL4A6-208ENST00000538570 LAD1O00515 517 aa10.77□□□□□ -0.68
COL4A6-208ENST00000538570 ENC1O14682 589 aa10.77□□□□□ -0.68
COL4A6-208ENST00000538570 HSPD1P10809 573 aaKnown RBP10.77□□□□□ -0.68
COL4A6-208ENST00000538570 HSPA8P11142 646 aaKnown RBP10.77□□□□□ -0.68
COL4A6-208ENST00000538570 MAPK4P31152 587 aa10.77□□□□□ -0.68
COL4A6-208ENST00000538570 MFSD14BQ5SR56 506 aa10.77□□□□□ -0.68
COL4A6-208ENST00000538570 HIBCHQ6NVY1 386 aaPredicted RBP10.77□□□□□ -0.68
COL4A6-208ENST00000538570 LRRC47Q8N1G4 583 aaKnown RBP10.77□□□□□ -0.68
COL4A6-208ENST00000538570 ATP6V1E2Q96A05 226 aa10.77□□□□□ -0.68
COL4A6-208ENST00000538570 EDC3Q96F86 508 aaKnown RBP10.77□□□□□ -0.68
COL4A6-208ENST00000538570 TXLNGQ9NUQ3 528 aa10.77□□□□□ -0.68
COL4A6-208ENST00000538570 PNMA2Q9UL42 364 aa10.77□□□□□ -0.68
COL4A6-208ENST00000538570 NCKAP5LQ9HCH0 1330 aa10.77□□□□□ -0.68
COL4A6-208ENST00000538570 RGS12O14924 1447 aa10.77□□□□□ -0.69
COL4A6-208ENST00000538570 BTBD18B2RXH4 712 aa10.77□□□□□ -0.69
COL4A6-208ENST00000538570 ANKRD65E5RJM6 399 aa10.77□□□□□ -0.69
COL4A6-208ENST00000538570 HEXIM1O94992 359 aaKnown RBP10.77□□□□□ -0.69
COL4A6-208ENST00000538570 KRT75O95678 551 aa10.77□□□□□ -0.69
COL4A6-208ENST00000538570 GTF2IP78347 998 aa10.77□□□□□ -0.69
COL4A6-208ENST00000538570 FAM160B1Q5W0V3 765 aa10.77□□□□□ -0.69
COL4A6-208ENST00000538570 GJA10Q969M2 543 aa10.77□□□□□ -0.69
COL4A6-208ENST00000538570 PAGR1Q9BTK6 254 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms