RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 USP17L10C9JJH3 530 aa14.63□□□□□ -0.07
LDLR-203ENST00000535915 RAD21O60216 631 aa14.63□□□□□ -0.07
LDLR-203ENST00000535915 CDC42EP5Q6NZY7 148 aa14.63□□□□□ -0.07
LDLR-203ENST00000535915 GJA10Q969M2 543 aa14.63□□□□□ -0.07
LDLR-203ENST00000535915 LRRC27Q9C0I9 530 aa14.63□□□□□ -0.07
LDLR-203ENST00000535915 NDST4Q9H3R1 872 aa14.63□□□□□ -0.07
LDLR-203ENST00000535915 MYO3BQ8WXR4 1341 aa14.63□□□□□ -0.07
LDLR-203ENST00000535915 ZBTB5O15062 677 aa14.63□□□□□ -0.07
LDLR-203ENST00000535915 FGFR1OPO95684 399 aaKnown RBP14.63□□□□□ -0.07
LDLR-203ENST00000535915 ATP1A1P05023 1023 aaKnown RBP14.63□□□□□ -0.07
LDLR-203ENST00000535915 CLK2P49760 499 aaKnown RBP14.63□□□□□ -0.07
LDLR-203ENST00000535915 ZNF662Q6ZS27 426 aa14.63□□□□□ -0.07
LDLR-203ENST00000535915 NOA1Q8NC60 698 aaKnown RBP14.63□□□□□ -0.07
LDLR-203ENST00000535915 PSTPIP2Q9H939 334 aa14.63□□□□□ -0.07
LDLR-203ENST00000535915 RCCD1A6NED2 376 aa14.62□□□□□ -0.07
LDLR-203ENST00000535915 CYP27A1Q02318 531 aa14.62□□□□□ -0.07
LDLR-203ENST00000535915 LRRC41Q15345 812 aa14.62□□□□□ -0.07
LDLR-203ENST00000535915 MAN2A1Q16706 1144 aa14.62□□□□□ -0.07
LDLR-203ENST00000535915 TMEM119Q4V9L6 283 aa14.62□□□□□ -0.07
LDLR-203ENST00000535915 BEND6Q5SZJ8 279 aaPredicted RBP14.62□□□□□ -0.07
LDLR-203ENST00000535915 TEKT1Q969V4 418 aa14.62□□□□□ -0.07
LDLR-203ENST00000535915 CCDC42Q96M95 316 aa14.62□□□□□ -0.07
LDLR-203ENST00000535915 LACRTQ9GZZ8 138 aa14.62□□□□□ -0.07
LDLR-203ENST00000535915 ZCCHC17Q9NP64 241 aaKnown RBP14.62□□□□□ -0.07
LDLR-203ENST00000535915 FAM207AQ9NSI2 230 aaPredicted RBP14.62□□□□□ -0.07
LDLR-203ENST00000535915 PCDHA12Q9UN75 941 aa14.62□□□□□ -0.07
LDLR-203ENST00000535915 SAR1BQ9Y6B6 198 aa14.62□□□□□ -0.07
LDLR-203ENST00000535915 SLURP2P0DP57 97 aa14.62□□□□□ -0.07
LDLR-203ENST00000535915 ERCC3P19447 782 aa14.62□□□□□ -0.07
LDLR-203ENST00000535915 LRRC63Q05C16 580 aa14.62□□□□□ -0.07
LDLR-203ENST00000535915 ECM1Q16610 540 aa14.62□□□□□ -0.07
LDLR-203ENST00000535915 HAS1Q92839 578 aa14.62□□□□□ -0.07
LDLR-203ENST00000535915 IQCDQ96DY2 449 aa14.62□□□□□ -0.07
LDLR-203ENST00000535915 MMRN2Q9H8L6 949 aa14.62□□□□□ -0.07
LDLR-203ENST00000535915 ABCB6Q9NP58 842 aa14.62□□□□□ -0.07
LDLR-203ENST00000535915 VSNL1P62760 191 aa14.62□□□□□ -0.07
LDLR-203ENST00000535915 CDK17Q00537 523 aa14.62□□□□□ -0.07
LDLR-203ENST00000535915 PSMD2Q13200 908 aa14.62□□□□□ -0.07
LDLR-203ENST00000535915 SPA17Q15506 151 aa14.62□□□□□ -0.07
LDLR-203ENST00000535915 GLIS3Q8NEA6 775 aa14.62□□□□□ -0.07
LDLR-203ENST00000535915 TSG101Q99816 390 aa14.62□□□□□ -0.07
LDLR-203ENST00000535915 MACROD2A1Z1Q3 448 aa14.61□□□□□ -0.07
LDLR-203ENST00000535915 ERICH4A6NGS2 130 aa14.61□□□□□ -0.07
LDLR-203ENST00000535915 MAP2K7O14733 419 aa14.61□□□□□ -0.07
LDLR-203ENST00000535915 SRGAP2O75044 1071 aa14.61□□□□□ -0.07
LDLR-203ENST00000535915 TRIM37O94972 964 aa14.61□□□□□ -0.07
LDLR-203ENST00000535915 PLEKP08567 350 aaPredicted RBP14.61□□□□□ -0.07
LDLR-203ENST00000535915 KIF5AQ12840 1032 aa14.61□□□□□ -0.07
LDLR-203ENST00000535915 NFIAQ12857 509 aa14.61□□□□□ -0.07
LDLR-203ENST00000535915 HDXQ7Z353 690 aa14.61□□□□□ -0.07
LDLR-203ENST00000535915 C2CD5Q86YS7 1000 aa14.61□□□□□ -0.07
LDLR-203ENST00000535915 UIMC1Q96RL1 719 aa14.61□□□□□ -0.07
LDLR-203ENST00000535915 TRPC5Q9UL62 973 aaPredicted RBP14.61□□□□□ -0.07
LDLR-203ENST00000535915 SIK3Q9Y2K2 1263 aa14.61□□□□□ -0.07
LDLR-203ENST00000535915 DUSP10Q9Y6W6 482 aa14.61□□□□□ -0.07
LDLR-203ENST00000535915 C10orf71Q711Q0 1435 aa14.61□□□□□ -0.07
LDLR-203ENST00000535915 GOLGB1Q14789 3259 aaKnown RBP14.61□□□□□ -0.07
LDLR-203ENST00000535915 SSBP05455 408 aaKnown RBP eCLIP14.61□□□□□ -0.07
LDLR-203ENST00000535915 GCFC2P16383 781 aaKnown RBP14.61□□□□□ -0.07
LDLR-203ENST00000535915 APOBEC3HQ6NTF7 200 aaKnown RBP14.61□□□□□ -0.07
LDLR-203ENST00000535915 HHIPL2Q6UWX4 724 aa14.61□□□□□ -0.07
LDLR-203ENST00000535915 CCDC84Q86UT8 332 aaPredicted RBP14.61□□□□□ -0.07
LDLR-203ENST00000535915 CAPZA3Q96KX2 299 aa14.61□□□□□ -0.07
LDLR-203ENST00000535915 PLAGL2Q9UPG8 496 aa14.61□□□□□ -0.07
LDLR-203ENST00000535915 EPHB6O15197 1021 aa14.6□□□□□ -0.07
LDLR-203ENST00000535915 VAV2P52735 878 aa14.6□□□□□ -0.07
LDLR-203ENST00000535915 PAPD7Q5XG87 772 aaKnown RBP14.6□□□□□ -0.07
LDLR-203ENST00000535915 KRT26Q7Z3Y9 468 aa14.6□□□□□ -0.07
LDLR-203ENST00000535915 MYOCDQ8IZQ8 938 aa14.6□□□□□ -0.07
LDLR-203ENST00000535915 TANGO6Q9C0B7 1094 aa14.6□□□□□ -0.07
LDLR-203ENST00000535915 GBP3Q9H0R5 595 aa14.6□□□□□ -0.07
LDLR-203ENST00000535915 ABCB11O95342 1321 aa14.6□□□□□ -0.07
LDLR-203ENST00000535915 USP17L15C9J2P7 530 aa14.6□□□□□ -0.07
LDLR-203ENST00000535915 USP17L13C9JLJ4 530 aa14.6□□□□□ -0.07
LDLR-203ENST00000535915 USP17L11C9JVI0 530 aa14.6□□□□□ -0.07
LDLR-203ENST00000535915 USP17L18D6R9N7 530 aa14.6□□□□□ -0.07
LDLR-203ENST00000535915 USP17L22D6RA61 530 aa14.6□□□□□ -0.07
LDLR-203ENST00000535915 USP17L17D6RBQ6 530 aa14.6□□□□□ -0.07
LDLR-203ENST00000535915 USP17L19D6RCP7 530 aa14.6□□□□□ -0.07
LDLR-203ENST00000535915 USP17L20D6RJB6 530 aa14.6□□□□□ -0.07
LDLR-203ENST00000535915 EHHADHQ08426 723 aa14.6□□□□□ -0.07
LDLR-203ENST00000535915 USP17L24Q0WX57 530 aa14.6□□□□□ -0.07
LDLR-203ENST00000535915 COASYQ13057 564 aa14.6□□□□□ -0.07
LDLR-203ENST00000535915 USP17L6PQ6QN14 398 aa14.6□□□□□ -0.07
LDLR-203ENST00000535915 ZFPM1Q8IX07 1006 aa14.6□□□□□ -0.07
LDLR-203ENST00000535915 MMS19Q96T76 1030 aa14.6□□□□□ -0.07
LDLR-203ENST00000535915 TMX4Q9H1E5 349 aaPredicted RBP14.6□□□□□ -0.07
LDLR-203ENST00000535915 DEF6Q9H4E7 631 aa14.6□□□□□ -0.07
LDLR-203ENST00000535915 SUGCTQ9HAC7 445 aa14.6□□□□□ -0.07
LDLR-203ENST00000535915 BMP2KQ9NSY1 1161 aaPredicted RBP14.6□□□□□ -0.07
LDLR-203ENST00000535915 RNF216Q9NWF9 866 aaPredicted RBP14.6□□□□□ -0.07
LDLR-203ENST00000535915 ZNF263O14978 683 aa14.59□□□□□ -0.07
LDLR-203ENST00000535915 TUBBP07437 444 aa14.59□□□□□ -0.07
LDLR-203ENST00000535915 NPR1P16066 1061 aa14.59□□□□□ -0.07
LDLR-203ENST00000535915 LRRC55Q6ZSA7 311 aa14.59□□□□□ -0.07
LDLR-203ENST00000535915 SECISBP2LQ93073 1101 aaKnown RBP14.59□□□□□ -0.07
LDLR-203ENST00000535915 DNAJC19Q96DA6 116 aa14.59□□□□□ -0.07
LDLR-203ENST00000535915 MTMR8Q96EF0 704 aa14.59□□□□□ -0.07
LDLR-203ENST00000535915 CCDC17Q96LX7 622 aa14.59□□□□□ -0.07
LDLR-203ENST00000535915 TSGA10Q9BZW7 698 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms