RNA–Protein interactions for RNA: ENST00000533818.5

CSDE1-215, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-215ENST00000533818 RBM23Q86U06 439 aaKnown RBP12.69□□□□□ -0.38
CSDE1-215ENST00000533818 FLCNQ8NFG4 579 aa12.69□□□□□ -0.38
CSDE1-215ENST00000533818 SDR42E1Q8WUS8 393 aa12.69□□□□□ -0.38
CSDE1-215ENST00000533818 SUSD6Q92537 303 aa12.69□□□□□ -0.38
CSDE1-215ENST00000533818 TRERF1Q96PN7 1200 aa12.69□□□□□ -0.38
CSDE1-215ENST00000533818 PURBQ96QR8 312 aaKnown RBP12.69□□□□□ -0.38
CSDE1-215ENST00000533818 FEM1BQ9UK73 627 aa12.69□□□□□ -0.38
CSDE1-215ENST00000533818 R4GN57 208 aa12.69□□□□□ -0.38
CSDE1-215ENST00000533818 GPR179Q6PRD1 2367 aa12.68□□□□□ -0.38
CSDE1-215ENST00000533818 RBM47A0AV96 593 aaKnown RBP12.68□□□□□ -0.38
CSDE1-215ENST00000533818 NKRFO15226 690 aaKnown RBP eCLIP12.68□□□□□ -0.38
CSDE1-215ENST00000533818 GLP2RO95838 553 aa12.68□□□□□ -0.38
CSDE1-215ENST00000533818 SP100P23497 879 aaPredicted RBP12.68□□□□□ -0.38
CSDE1-215ENST00000533818 DDX10Q13206 875 aaKnown RBP12.68□□□□□ -0.38
CSDE1-215ENST00000533818 PTK7Q13308 1070 aa12.68□□□□□ -0.38
CSDE1-215ENST00000533818 CAMK1Q14012 370 aa12.68□□□□□ -0.38
CSDE1-215ENST00000533818 PPP2R5BQ15173 497 aa12.68□□□□□ -0.38
CSDE1-215ENST00000533818 CCDC105Q8IYK2 499 aa12.68□□□□□ -0.38
CSDE1-215ENST00000533818 LRRC47Q8N1G4 583 aaKnown RBP12.68□□□□□ -0.38
CSDE1-215ENST00000533818 DTWD2Q8NBA8 298 aa12.68□□□□□ -0.38
CSDE1-215ENST00000533818 CYP39A1Q9NYL5 469 aa12.68□□□□□ -0.38
CSDE1-215ENST00000533818 PI15O43692 258 aa12.67□□□□□ -0.38
CSDE1-215ENST00000533818 LINC00271P0C7V0 271 aa12.67□□□□□ -0.38
CSDE1-215ENST00000533818 ALAS1P13196 640 aa12.67□□□□□ -0.38
CSDE1-215ENST00000533818 TRIM71Q2Q1W2 868 aaKnown RBP12.67□□□□□ -0.38
CSDE1-215ENST00000533818 TKFCQ3LXA3 575 aa12.67□□□□□ -0.38
CSDE1-215ENST00000533818 PLEKHG4Q58EX7 1191 aa12.67□□□□□ -0.38
CSDE1-215ENST00000533818 TNNI3KQ59H18 835 aa12.67□□□□□ -0.38
CSDE1-215ENST00000533818 COPS5Q92905 334 aa12.67□□□□□ -0.38
CSDE1-215ENST00000533818 SMOC2Q9H3U7 446 aa12.67□□□□□ -0.38
CSDE1-215ENST00000533818 PRKRIP1Q9H875 184 aaPredicted RBP12.67□□□□□ -0.38
CSDE1-215ENST00000533818 GTF2IRD1Q9UHL9 959 aa12.67□□□□□ -0.38
CSDE1-215ENST00000533818 PLAGL2Q9UPG8 496 aa12.67□□□□□ -0.38
CSDE1-215ENST00000533818 FPGT-TNNI3KV9GXZ4 949 aa12.67□□□□□ -0.38
CSDE1-215ENST00000533818 MICAL3Q7RTP6 2002 aa12.66□□□□□ -0.38
CSDE1-215ENST00000533818 CYP2D7A0A087X1C5 515 aa12.66□□□□□ -0.38
CSDE1-215ENST00000533818 RSPH10B2B2RC85 870 aa12.66□□□□□ -0.38
CSDE1-215ENST00000533818 ADRB1P08588 477 aa12.66□□□□□ -0.38
CSDE1-215ENST00000533818 RSPH10BP0C881 870 aa12.66□□□□□ -0.38
CSDE1-215ENST00000533818 FDX1P10109 184 aa12.66□□□□□ -0.38
CSDE1-215ENST00000533818 PDE4BQ07343 736 aa12.66□□□□□ -0.38
CSDE1-215ENST00000533818 COL9A3Q14050 684 aaPredicted RBP12.66□□□□□ -0.38
CSDE1-215ENST00000533818 NSMFQ6X4W1 530 aa12.66□□□□□ -0.38
CSDE1-215ENST00000533818 C7orf31Q8N865 590 aa12.66□□□□□ -0.38
CSDE1-215ENST00000533818 SSH1Q8WYL5 1049 aa12.66□□□□□ -0.38
CSDE1-215ENST00000533818 SEPT8Q92599 483 aa12.66□□□□□ -0.38
CSDE1-215ENST00000533818 WNT8BQ93098 351 aa12.66□□□□□ -0.38
CSDE1-215ENST00000533818 MEIS3Q99687 375 aa12.66□□□□□ -0.38
CSDE1-215ENST00000533818 ANTXR1Q9H6X2 564 aa12.66□□□□□ -0.38
CSDE1-215ENST00000533818 GPR108Q9NPR9 543 aa12.66□□□□□ -0.38
CSDE1-215ENST00000533818 TSHZ2Q9NRE2 1034 aa12.66□□□□□ -0.38
CSDE1-215ENST00000533818 HDAC6Q9UBN7 1215 aa12.66□□□□□ -0.38
CSDE1-215ENST00000533818 ADD3Q9UEY8 706 aaKnown RBP12.66□□□□□ -0.38
CSDE1-215ENST00000533818 OTOGLQ3ZCN5 2332 aa12.66□□□□□ -0.38
CSDE1-215ENST00000533818 MYO5AQ9Y4I1 1855 aaKnown RBP12.65□□□□□ -0.38
CSDE1-215ENST00000533818 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.65□□□□□ -0.38
CSDE1-215ENST00000533818 DCDC2BA2VCK2 349 aa12.65□□□□□ -0.38
CSDE1-215ENST00000533818 AOC1P19801 751 aa12.65□□□□□ -0.38
CSDE1-215ENST00000533818 DNAJB1P25685 340 aa12.65□□□□□ -0.38
CSDE1-215ENST00000533818 MTX1Q13505 466 aa12.65□□□□□ -0.38
CSDE1-215ENST00000533818 MUM1L1Q5H9M0 696 aa12.65□□□□□ -0.38
CSDE1-215ENST00000533818 CWF19L1Q69YN2 538 aaKnown RBP12.65□□□□□ -0.38
CSDE1-215ENST00000533818 C16orf86Q6ZW13 317 aa12.65□□□□□ -0.38
CSDE1-215ENST00000533818 CLP1Q92989 425 aaKnown RBP12.65□□□□□ -0.38
CSDE1-215ENST00000533818 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.65□□□□□ -0.38
CSDE1-215ENST00000533818 PLVAPQ9BX97 442 aa12.65□□□□□ -0.38
CSDE1-215ENST00000533818 TLE6Q9H808 572 aa12.65□□□□□ -0.38
CSDE1-215ENST00000533818 NYAP2Q9P242 653 aa12.65□□□□□ -0.38
CSDE1-215ENST00000533818 NR2E1Q9Y466 385 aa12.65□□□□□ -0.38
CSDE1-215ENST00000533818 ARP10275 920 aa12.64□□□□□ -0.39
CSDE1-215ENST00000533818 TXNP10599 105 aaKnown RBP12.64□□□□□ -0.39
CSDE1-215ENST00000533818 DMWDQ09019 674 aa12.64□□□□□ -0.39
CSDE1-215ENST00000533818 C12orf60Q5U649 245 aa12.64□□□□□ -0.39
CSDE1-215ENST00000533818 AMOTL1Q8IY63 956 aa12.64□□□□□ -0.39
CSDE1-215ENST00000533818 SCFD2Q8WU76 684 aa12.64□□□□□ -0.39
CSDE1-215ENST00000533818 AFG1LQ8WV93 481 aa12.64□□□□□ -0.39
CSDE1-215ENST00000533818 KAT2BQ92831 832 aa12.64□□□□□ -0.39
CSDE1-215ENST00000533818 CLIP2Q9UDT6 1046 aa12.64□□□□□ -0.39
CSDE1-215ENST00000533818 THPOP40225 353 aa12.63□□□□□ -0.39
CSDE1-215ENST00000533818 ALDH5A1P51649 535 aaPredicted RBP12.63□□□□□ -0.39
CSDE1-215ENST00000533818 RBM10P98175 930 aaKnown RBP12.63□□□□□ -0.39
CSDE1-215ENST00000533818 ZNF200P98182 395 aaPredicted RBP12.63□□□□□ -0.39
CSDE1-215ENST00000533818 LCORLQ8N3X6 602 aa12.63□□□□□ -0.39
CSDE1-215ENST00000533818 SPPL3Q8TCT6 385 aa12.63□□□□□ -0.39
CSDE1-215ENST00000533818 P2RX5Q93086 422 aa12.63□□□□□ -0.39
CSDE1-215ENST00000533818 NEK1Q96PY6 1258 aa12.63□□□□□ -0.39
CSDE1-215ENST00000533818 RTP3Q9BQQ7 232 aa12.63□□□□□ -0.39
CSDE1-215ENST00000533818 ALG1Q9BT22 464 aa12.63□□□□□ -0.39
CSDE1-215ENST00000533818 CDV3Q9UKY7 258 aaKnown RBP12.63□□□□□ -0.39
CSDE1-215ENST00000533818 ISY1Q9ULR0 285 aaKnown RBP12.63□□□□□ -0.39
CSDE1-215ENST00000533818 NLRC5Q86WI3 1866 aa12.63□□□□□ -0.39
CSDE1-215ENST00000533818 ADGRA3Q8IWK6 1321 aa12.62□□□□□ -0.39
CSDE1-215ENST00000533818 ATG2AQ2TAZ0 1938 aa12.62□□□□□ -0.39
CSDE1-215ENST00000533818 NAV1Q8NEY1 1877 aa12.62□□□□□ -0.39
CSDE1-215ENST00000533818 LOC102724159A0A0B4J2E5 919 aa12.62□□□□□ -0.39
CSDE1-215ENST00000533818 TMEM232C9JQI7 657 aa12.62□□□□□ -0.39
CSDE1-215ENST00000533818 PER2O15055 1255 aa12.62□□□□□ -0.39
CSDE1-215ENST00000533818 PRKAB2O43741 272 aa12.62□□□□□ -0.39
CSDE1-215ENST00000533818 ITGB1P05556 798 aa12.62□□□□□ -0.39
CSDE1-215ENST00000533818 CASTP20810 708 aaKnown RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms