RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 NCOR2Q9Y618 2525 aa9.85□□□□□ -0.83
CD44-232ENST00000531118 F5H6K3 240 aa9.85□□□□□ -0.83
CD44-232ENST00000531118 MBD4O95243 580 aa9.85□□□□□ -0.83
CD44-232ENST00000531118 PTPN11Q06124 597 aaPredicted RBP9.85□□□□□ -0.83
CD44-232ENST00000531118 KLRC3Q07444 240 aa9.85□□□□□ -0.83
CD44-232ENST00000531118 GPNMBQ14956 572 aa9.85□□□□□ -0.83
CD44-232ENST00000531118 SMAD2Q15796 467 aaKnown RBP9.85□□□□□ -0.83
CD44-232ENST00000531118 DUSP28Q4G0W2 176 aa9.85□□□□□ -0.83
CD44-232ENST00000531118 TPRNQ4KMQ1 711 aa9.85□□□□□ -0.83
CD44-232ENST00000531118 IQSEC1Q6DN90 963 aa9.85□□□□□ -0.83
CD44-232ENST00000531118 FAM117BQ6P1L5 589 aa9.85□□□□□ -0.83
CD44-232ENST00000531118 EP400NLQ6ZTU2 488 aa9.85□□□□□ -0.83
CD44-232ENST00000531118 LRRC8DQ7L1W4 858 aa9.85□□□□□ -0.83
CD44-232ENST00000531118 ERMP1Q7Z2K6 904 aa9.85□□□□□ -0.83
CD44-232ENST00000531118 RNF135Q8IUD6 432 aa9.85□□□□□ -0.83
CD44-232ENST00000531118 AMOTL1Q8IY63 956 aa9.85□□□□□ -0.83
CD44-232ENST00000531118 FAM9BQ8IZU0 186 aa9.85□□□□□ -0.83
CD44-232ENST00000531118 BANK1Q8NDB2 785 aa9.85□□□□□ -0.83
CD44-232ENST00000531118 SSH3Q8TE77 659 aa9.85□□□□□ -0.83
CD44-232ENST00000531118 EDAQ92838 391 aa9.85□□□□□ -0.83
CD44-232ENST00000531118 NSUN3Q9H649 340 aaKnown RBP9.85□□□□□ -0.83
CD44-232ENST00000531118 CLDND1Q9NY35 253 aa9.85□□□□□ -0.83
CD44-232ENST00000531118 CTNNA3Q9UI47 895 aa9.85□□□□□ -0.83
CD44-232ENST00000531118 NOD1Q9Y239 953 aa9.85□□□□□ -0.83
CD44-232ENST00000531118 USP17L12C9JPN9 530 aa9.84□□□□□ -0.83
CD44-232ENST00000531118 USP17L21D6R901 530 aa9.84□□□□□ -0.83
CD44-232ENST00000531118 HRO43593 1189 aa9.84□□□□□ -0.83
CD44-232ENST00000531118 SURF6O75683 361 aaKnown RBP9.84□□□□□ -0.83
CD44-232ENST00000531118 CXCL10P02778 98 aa9.84□□□□□ -0.83
CD44-232ENST00000531118 SELPP16109 830 aa9.84□□□□□ -0.83
CD44-232ENST00000531118 FECHP22830 423 aa9.84□□□□□ -0.83
CD44-232ENST00000531118 RBL2Q08999 1139 aa9.84□□□□□ -0.83
CD44-232ENST00000531118 TTF1Q15361 905 aaPredicted RBP9.84□□□□□ -0.83
CD44-232ENST00000531118 PKN1Q16512 942 aa9.84□□□□□ -0.83
CD44-232ENST00000531118 TRIM67Q6ZTA4 783 aa9.84□□□□□ -0.83
CD44-232ENST00000531118 KIAA1211Q6ZU35 1233 aa9.84□□□□□ -0.83
CD44-232ENST00000531118 LAPTM4BQ86VI4 370 aa9.84□□□□□ -0.83
CD44-232ENST00000531118 OR6J1Q8NGC5 347 aa9.84□□□□□ -0.83
CD44-232ENST00000531118 MORC4Q8TE76 937 aa9.84□□□□□ -0.83
CD44-232ENST00000531118 DHX38Q92620 1227 aaKnown RBP9.84□□□□□ -0.83
CD44-232ENST00000531118 PBXIP1Q96AQ6 731 aa9.84□□□□□ -0.83
CD44-232ENST00000531118 CTAGE1Q96RT6 745 aa9.84□□□□□ -0.83
CD44-232ENST00000531118 ATP8A2Q9NTI2 1148 aa9.84□□□□□ -0.83
CD44-232ENST00000531118 NYAP2Q9P242 653 aa9.84□□□□□ -0.83
CD44-232ENST00000531118 FEM1BQ9UK73 627 aa9.84□□□□□ -0.83
CD44-232ENST00000531118 ADGRG1Q9Y653 693 aa9.84□□□□□ -0.83
CD44-232ENST00000531118 KIAA1671Q9BY89 1806 aa9.84□□□□□ -0.83
CD44-232ENST00000531118 RAD50Q92878 1312 aa9.83□□□□□ -0.84
CD44-232ENST00000531118 ABHD14A-ACY1A0A1B0GW23 586 aa9.83□□□□□ -0.84
CD44-232ENST00000531118 BHMG1C9JSJ3 638 aaPredicted RBP9.83□□□□□ -0.84
CD44-232ENST00000531118 RBAK-RBAKDNI3L0D1 243 aa9.83□□□□□ -0.84
CD44-232ENST00000531118 MBTPS2O43462 519 aa9.83□□□□□ -0.84
CD44-232ENST00000531118 NBNO60934 754 aa9.83□□□□□ -0.84
CD44-232ENST00000531118 EFCAB14O75071 495 aa9.83□□□□□ -0.84
CD44-232ENST00000531118 OATP04181 439 aa9.83□□□□□ -0.84
CD44-232ENST00000531118 CT47B1P0C2W7 299 aaPredicted RBP9.83□□□□□ -0.84
CD44-232ENST00000531118 RASA1P20936 1047 aa9.83□□□□□ -0.84
CD44-232ENST00000531118 VCPP55072 806 aaKnown RBP9.83□□□□□ -0.84
CD44-232ENST00000531118 SMAD4Q13485 552 aaKnown RBP9.83□□□□□ -0.84
CD44-232ENST00000531118 CLUL1Q15846 466 aa9.83□□□□□ -0.84
CD44-232ENST00000531118 TKFCQ3LXA3 575 aa9.83□□□□□ -0.84
CD44-232ENST00000531118 FBXL6Q8N531 539 aa9.83□□□□□ -0.84
CD44-232ENST00000531118 KRI1Q8N9T8 703 aaKnown RBP9.83□□□□□ -0.84
CD44-232ENST00000531118 TATDN2Q93075 761 aa9.83□□□□□ -0.84
CD44-232ENST00000531118 SAMD11Q96NU1 681 aa9.83□□□□□ -0.84
CD44-232ENST00000531118 CYP39A1Q9NYL5 469 aa9.83□□□□□ -0.84
CD44-232ENST00000531118 TNNQ9UQP3 1299 aa9.83□□□□□ -0.84
CD44-232ENST00000531118 CACNA1GO43497 2377 aa9.83□□□□□ -0.84
CD44-232ENST00000531118 KIAA1217Q5T5P2 1943 aa9.82□□□□□ -0.84
CD44-232ENST00000531118 IGKV6D-41A0A0C4DH26 115 aa9.82□□□□□ -0.84
CD44-232ENST00000531118 TBX10O75333 385 aa9.82□□□□□ -0.84
CD44-232ENST00000531118 PARNO95453 639 aaKnown RBP9.82□□□□□ -0.84
CD44-232ENST00000531118 TRIM27P14373 513 aa9.82□□□□□ -0.84
CD44-232ENST00000531118 LTBRP36941 435 aa9.82□□□□□ -0.84
CD44-232ENST00000531118 HTRA4P83105 476 aaPredicted RBP9.82□□□□□ -0.84
CD44-232ENST00000531118 PTGISQ16647 500 aa9.82□□□□□ -0.84
CD44-232ENST00000531118 EPC2Q52LR7 807 aa9.82□□□□□ -0.84
CD44-232ENST00000531118 MUM1L1Q5H9M0 696 aa9.82□□□□□ -0.84
CD44-232ENST00000531118 ASCL5Q7RTU5 278 aa9.82□□□□□ -0.84
CD44-232ENST00000531118 AACSQ86V21 672 aa9.82□□□□□ -0.84
CD44-232ENST00000531118 LRRC47Q8N1G4 583 aaKnown RBP9.82□□□□□ -0.84
CD44-232ENST00000531118 ARHGAP45Q92619 1136 aa9.82□□□□□ -0.84
CD44-232ENST00000531118 ATOH1Q92858 354 aaPredicted RBP9.82□□□□□ -0.84
CD44-232ENST00000531118 DNAJC2Q99543 621 aaKnown RBP9.82□□□□□ -0.84
CD44-232ENST00000531118 WDR11Q9BZH6 1224 aa9.82□□□□□ -0.84
CD44-232ENST00000531118 ARPP21Q9UBL0 812 aaPredicted RBP9.82□□□□□ -0.84
CD44-232ENST00000531118 NOP58Q9Y2X3 529 aaKnown RBP9.82□□□□□ -0.84
CD44-232ENST00000531118 INSL6Q9Y581 213 aa9.82□□□□□ -0.84
CD44-232ENST00000531118 PLIN4Q96Q06 1357 aa9.82□□□□□ -0.84
CD44-232ENST00000531118 KMT2BQ9UMN6 2715 aaPredicted RBP9.81□□□□□ -0.84
CD44-232ENST00000531118 RBM47A0AV96 593 aaKnown RBP9.81□□□□□ -0.84
CD44-232ENST00000531118 PRR23AA6NEV1 266 aa9.81□□□□□ -0.84
CD44-232ENST00000531118 PROB1E7EW31 1015 aa9.81□□□□□ -0.84
CD44-232ENST00000531118 H3BNC9 293 aa9.81□□□□□ -0.84
CD44-232ENST00000531118 STXBP3O00186 592 aa9.81□□□□□ -0.84
CD44-232ENST00000531118 GOLIM4O00461 696 aa9.81□□□□□ -0.84
CD44-232ENST00000531118 BCAR3O75815 825 aa9.81□□□□□ -0.84
CD44-232ENST00000531118 FDX1P10109 184 aa9.81□□□□□ -0.84
CD44-232ENST00000531118 ALAS1P13196 640 aa9.81□□□□□ -0.84
CD44-232ENST00000531118 ADD2P35612 726 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms