RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 RAD54LQ92698 747 aa21.39■■□□□ 1.01
VPS28-213ENST00000530983 FAM204AQ9H8W3 233 aa21.39■■□□□ 1.01
VPS28-213ENST00000530983 MLXIPQ9HAP2 919 aa21.39■■□□□ 1.01
VPS28-213ENST00000530983 USO1O60763 962 aaKnown RBP21.38■■□□□ 1.01
VPS28-213ENST00000530983 RNF40O75150 1001 aa21.38■■□□□ 1.01
VPS28-213ENST00000530983 IL1R1P14778 569 aa21.38■■□□□ 1.01
VPS28-213ENST00000530983 PLCG2P16885 1265 aa21.38■■□□□ 1.01
VPS28-213ENST00000530983 EIF4A3P38919 411 aaKnown RBP21.38■■□□□ 1.01
VPS28-213ENST00000530983 EHHADHQ08426 723 aa21.38■■□□□ 1.01
VPS28-213ENST00000530983 KCNK18Q7Z418 384 aa21.38■■□□□ 1.01
VPS28-213ENST00000530983 GSPT2Q8IYD1 628 aaKnown RBP21.38■■□□□ 1.01
VPS28-213ENST00000530983 CNBD1Q8NA66 436 aa21.38■■□□□ 1.01
VPS28-213ENST00000530983 CDK5RAP3Q96JB5 506 aa21.38■■□□□ 1.01
VPS28-213ENST00000530983 MMRN2Q9H8L6 949 aa21.38■■□□□ 1.01
VPS28-213ENST00000530983 RSPH14Q9UHP6 348 aa21.38■■□□□ 1.01
VPS28-213ENST00000530983 UFL1O94874 794 aa21.38■■□□□ 1.01
VPS28-213ENST00000530983 PRPF6O94906 941 aaKnown RBP21.38■■□□□ 1.01
VPS28-213ENST00000530983 ADCY7P51828 1080 aa21.38■■□□□ 1.01
VPS28-213ENST00000530983 LRRC63Q05C16 580 aa21.38■■□□□ 1.01
VPS28-213ENST00000530983 TMEM266Q2M3C6 531 aa21.38■■□□□ 1.01
VPS28-213ENST00000530983 CCNI2Q6ZMN8 369 aaPredicted RBP21.38■■□□□ 1.01
VPS28-213ENST00000530983 LEKR1Q6ZMV7 388 aa21.38■■□□□ 1.01
VPS28-213ENST00000530983 CCDC84Q86UT8 332 aaPredicted RBP21.38■■□□□ 1.01
VPS28-213ENST00000530983 GLIS3Q8NEA6 775 aa21.38■■□□□ 1.01
VPS28-213ENST00000530983 GDAP1L1Q96MZ0 367 aa21.38■■□□□ 1.01
VPS28-213ENST00000530983 LRRC53A6NM62 1247 aa21.37■■□□□ 1.01
VPS28-213ENST00000530983 PDIA5Q14554 519 aa21.37■■□□□ 1.01
VPS28-213ENST00000530983 SRLQ86TD4 932 aa21.37■■□□□ 1.01
VPS28-213ENST00000530983 BAP1Q92560 729 aa21.37■■□□□ 1.01
VPS28-213ENST00000530983 FAM163AQ96GL9 167 aaPredicted RBP21.37■■□□□ 1.01
VPS28-213ENST00000530983 PLIN4Q96Q06 1357 aa21.37■■□□□ 1.01
VPS28-213ENST00000530983 TOM1O60784 492 aa21.37■■□□□ 1.01
VPS28-213ENST00000530983 TACC1O75410 805 aa21.37■■□□□ 1.01
VPS28-213ENST00000530983 MOCS3O95396 460 aa21.37■■□□□ 1.01
VPS28-213ENST00000530983 RFC4P35249 363 aa21.37■■□□□ 1.01
VPS28-213ENST00000530983 IQCEQ6IPM2 695 aa21.37■■□□□ 1.01
VPS28-213ENST00000530983 SNX29Q8TEQ0 813 aa21.37■■□□□ 1.01
VPS28-213ENST00000530983 DDX12PQ92771 950 aa21.37■■□□□ 1.01
VPS28-213ENST00000530983 NGLY1Q96IV0 654 aa21.37■■□□□ 1.01
VPS28-213ENST00000530983 GAKO14976 1311 aa21.36■■□□□ 1.01
VPS28-213ENST00000530983 RPS6KA5O75582 802 aa21.36■■□□□ 1.01
VPS28-213ENST00000530983 ERCC3P19447 782 aa21.36■■□□□ 1.01
VPS28-213ENST00000530983 TMEM119Q4V9L6 283 aa21.36■■□□□ 1.01
VPS28-213ENST00000530983 MFSD14BQ5SR56 506 aa21.36■■□□□ 1.01
VPS28-213ENST00000530983 RRAGAQ7L523 313 aa21.36■■□□□ 1.01
VPS28-213ENST00000530983 ZNF572Q7Z3I7 529 aaPredicted RBP21.36■■□□□ 1.01
VPS28-213ENST00000530983 GPIHBP1Q8IV16 184 aa21.36■■□□□ 1.01
VPS28-213ENST00000530983 SELENOOQ9BVL4 669 aa21.36■■□□□ 1.01
VPS28-213ENST00000530983 DEF6Q9H4E7 631 aa21.36■■□□□ 1.01
VPS28-213ENST00000530983 MTMR4Q9NYA4 1195 aa21.36■■□□□ 1.01
VPS28-213ENST00000530983 FGFR1OPO95684 399 aaKnown RBP21.35■■□□□ 1.01
VPS28-213ENST00000530983 LRRC47Q8N1G4 583 aaKnown RBP21.35■■□□□ 1.01
VPS28-213ENST00000530983 MMGT1Q8N4V1 131 aa21.35■■□□□ 1.01
VPS28-213ENST00000530983 DRC1Q96MC2 740 aa21.35■■□□□ 1.01
VPS28-213ENST00000530983 RAB34Q9BZG1 259 aa21.35■■□□□ 1.01
VPS28-213ENST00000530983 RRP15Q9Y3B9 282 aaKnown RBP21.35■■□□□ 1.01
VPS28-213ENST00000530983 AKR1B10O60218 316 aa21.35■■□□□ 1.01
VPS28-213ENST00000530983 PRLRP16471 622 aa21.35■■□□□ 1.01
VPS28-213ENST00000530983 ATP2B2Q01814 1243 aa21.35■■□□□ 1.01
VPS28-213ENST00000530983 LRRC41Q15345 812 aa21.35■■□□□ 1.01
VPS28-213ENST00000530983 ECM1Q16610 540 aa21.35■■□□□ 1.01
VPS28-213ENST00000530983 KRT79Q5XKE5 535 aa21.35■■□□□ 1.01
VPS28-213ENST00000530983 MYH7BA7E2Y1 1941 aa21.35■■□□□ 1.01
VPS28-213ENST00000530983 SNHG28P0DPA3 235 aa21.34■■□□□ 1.01
VPS28-213ENST00000530983 ITIH3Q06033 890 aa21.34■■□□□ 1.01
VPS28-213ENST00000530983 ASPRV1Q53RT3 343 aa21.34■■□□□ 1.01
VPS28-213ENST00000530983 RIN2Q8WYP3 895 aaPredicted RBP21.34■■□□□ 1.01
VPS28-213ENST00000530983 C8orf37Q96NL8 207 aa21.34■■□□□ 1.01
VPS28-213ENST00000530983 SALL4Q9UJQ4 1053 aa21.34■■□□□ 1.01
VPS28-213ENST00000530983 EZH2Q15910 746 aaKnown RBP21.34■■□□□ 1.01
VPS28-213ENST00000530983 ASTE1Q2TB18 679 aaPredicted RBP21.34■■□□□ 1.01
VPS28-213ENST00000530983 PRR5LQ6MZQ0 368 aa21.34■■□□□ 1.01
VPS28-213ENST00000530983 CCDC155Q8N6L0 562 aa21.34■■□□□ 1.01
VPS28-213ENST00000530983 OSBPL9Q96SU4 736 aa21.34■■□□□ 1.01
VPS28-213ENST00000530983 LY75O60449 1722 aa21.34■■□□□ 1.01
VPS28-213ENST00000530983 ATP2B4P23634 1241 aa21.33■■□□□ 1.01
VPS28-213ENST00000530983 TNNI2P48788 182 aa21.33■■□□□ 1.01
VPS28-213ENST00000530983 PSMD2Q13200 908 aa21.33■■□□□ 1.01
VPS28-213ENST00000530983 TRAPPC3LQ5T215 181 aa21.33■■□□□ 1.01
VPS28-213ENST00000530983 NFRKBQ6P4R8 1299 aa21.33■■□□□ 1.01
VPS28-213ENST00000530983 CLEC10AQ8IUN9 316 aa21.33■■□□□ 1.01
VPS28-213ENST00000530983 AENQ8WTP8 325 aaKnown RBP21.33■■□□□ 1.01
VPS28-213ENST00000530983 HDAC7Q8WUI4 952 aa21.33■■□□□ 1.01
VPS28-213ENST00000530983 RPGRQ92834 1020 aaKnown RBP21.33■■□□□ 1.01
VPS28-213ENST00000530983 ZFP91Q96JP5 570 aaPredicted RBP21.33■■□□□ 1.01
VPS28-213ENST00000530983 RIC8AQ9NPQ8 531 aa21.33■■□□□ 1.01
VPS28-213ENST00000530983 GGA1Q9UJY5 639 aa21.33■■□□□ 1.01
VPS28-213ENST00000530983 AGPSO00116 658 aa21.33■■□□□ 1
VPS28-213ENST00000530983 GGCXP38435 758 aa21.33■■□□□ 1
VPS28-213ENST00000530983 EIF6P56537 245 aaKnown RBP21.33■■□□□ 1
VPS28-213ENST00000530983 UBE2SQ16763 222 aa21.33■■□□□ 1
VPS28-213ENST00000530983 ZCWPW2Q504Y3 356 aa21.33■■□□□ 1
VPS28-213ENST00000530983 PPP4R3AQ6IN85 833 aa21.33■■□□□ 1
VPS28-213ENST00000530983 PDXDC1Q6P996 788 aa21.33■■□□□ 1
VPS28-213ENST00000530983 FOXR2Q6PJQ5 311 aa21.33■■□□□ 1
VPS28-213ENST00000530983 SPATA4Q8NEY3 305 aa21.33■■□□□ 1
VPS28-213ENST00000530983 DNAJC19Q96DA6 116 aa21.33■■□□□ 1
VPS28-213ENST00000530983 HINFPQ9BQA5 517 aa21.33■■□□□ 1
VPS28-213ENST00000530983 PJA2O43164 708 aa21.32■■□□□ 1
VPS28-213ENST00000530983 PPP1R11O60927 126 aaPredicted RBP21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms