RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 STX8Q9UNK0 236 aa12.36□□□□□ -0.43
CPSF1-203ENST00000527916 ZNF318Q5VUA4 2279 aa12.36□□□□□ -0.43
CPSF1-203ENST00000527916 C5orf42Q9H799 3197 aa12.35□□□□□ -0.43
CPSF1-203ENST00000527916 POTEB3A0JP26 581 aa12.35□□□□□ -0.43
CPSF1-203ENST00000527916 LINC01553A4QN01 128 aa12.35□□□□□ -0.43
CPSF1-203ENST00000527916 B4DLN1 442 aa12.35□□□□□ -0.43
CPSF1-203ENST00000527916 ICAM1P05362 532 aa12.35□□□□□ -0.43
CPSF1-203ENST00000527916 MRPL12P52815 198 aaKnown RBP12.35□□□□□ -0.43
CPSF1-203ENST00000527916 SNAP25P60880 206 aa12.35□□□□□ -0.43
CPSF1-203ENST00000527916 DEFB103AP81534 67 aa12.35□□□□□ -0.43
CPSF1-203ENST00000527916 PDE4DQ08499 809 aa12.35□□□□□ -0.43
CPSF1-203ENST00000527916 BAATQ14032 418 aaPredicted RBP12.35□□□□□ -0.43
CPSF1-203ENST00000527916 IKBKEQ14164 716 aa12.35□□□□□ -0.43
CPSF1-203ENST00000527916 POTEBQ6S5H4 581 aa12.35□□□□□ -0.43
CPSF1-203ENST00000527916 KCTD1Q719H9 257 aa12.35□□□□□ -0.43
CPSF1-203ENST00000527916 LRRC8DQ7L1W4 858 aa12.35□□□□□ -0.43
CPSF1-203ENST00000527916 TMCO2Q7Z6W1 182 aaPredicted RBP12.35□□□□□ -0.43
CPSF1-203ENST00000527916 CHMP4CQ96CF2 233 aa12.35□□□□□ -0.43
CPSF1-203ENST00000527916 MFSD14AQ96MC6 490 aa12.35□□□□□ -0.43
CPSF1-203ENST00000527916 PURBQ96QR8 312 aaKnown RBP12.35□□□□□ -0.43
CPSF1-203ENST00000527916 UPF3BQ9BZI7 483 aaKnown RBP12.35□□□□□ -0.43
CPSF1-203ENST00000527916 RNF41Q9H4P4 317 aaPredicted RBP12.35□□□□□ -0.43
CPSF1-203ENST00000527916 PRKAG3Q9UGI9 489 aa12.35□□□□□ -0.43
CPSF1-203ENST00000527916 ZDBF2Q9HCK1 2354 aa12.34□□□□□ -0.43
CPSF1-203ENST00000527916 USP34Q70CQ2 3546 aa12.34□□□□□ -0.43
CPSF1-203ENST00000527916 PTPDC1A2A3K4 754 aa12.34□□□□□ -0.43
CPSF1-203ENST00000527916 NMT2O60551 498 aa12.34□□□□□ -0.43
CPSF1-203ENST00000527916 MFSD6Q6ZSS7 791 aa12.34□□□□□ -0.43
CPSF1-203ENST00000527916 FBXO22Q8NEZ5 403 aa12.34□□□□□ -0.43
CPSF1-203ENST00000527916 PPP1R13LQ8WUF5 828 aa12.34□□□□□ -0.43
CPSF1-203ENST00000527916 DCAF4Q8WV16 495 aa12.34□□□□□ -0.43
CPSF1-203ENST00000527916 MRPL38Q96DV4 380 aaKnown RBP12.34□□□□□ -0.43
CPSF1-203ENST00000527916 PNMA2Q9UL42 364 aa12.34□□□□□ -0.43
CPSF1-203ENST00000527916 INSL6Q9Y581 213 aa12.34□□□□□ -0.43
CPSF1-203ENST00000527916 SIP14410 1827 aa12.34□□□□□ -0.43
CPSF1-203ENST00000527916 PTPRSQ13332 1948 aa12.33□□□□□ -0.44
CPSF1-203ENST00000527916 ZNF213O14771 459 aa12.33□□□□□ -0.44
CPSF1-203ENST00000527916 CXCL10P02778 98 aa12.33□□□□□ -0.44
CPSF1-203ENST00000527916 TXNP10599 105 aaKnown RBP12.33□□□□□ -0.44
CPSF1-203ENST00000527916 TOP1P11387 765 aaKnown RBP12.33□□□□□ -0.44
CPSF1-203ENST00000527916 TIGD5Q53EQ6 642 aa12.33□□□□□ -0.44
CPSF1-203ENST00000527916 CWC27Q6UX04 472 aaKnown RBP12.33□□□□□ -0.44
CPSF1-203ENST00000527916 BTNL9Q6UXG8 535 aa12.33□□□□□ -0.44
CPSF1-203ENST00000527916 SESTD1Q86VW0 696 aa12.33□□□□□ -0.44
CPSF1-203ENST00000527916 NEK9Q8TD19 979 aa12.33□□□□□ -0.44
CPSF1-203ENST00000527916 DSCC1Q9BVC3 393 aa12.33□□□□□ -0.44
CPSF1-203ENST00000527916 DIAPH3Q9NSV4 1193 aa12.33□□□□□ -0.44
CPSF1-203ENST00000527916 LCTP09848 1927 aa12.33□□□□□ -0.44
CPSF1-203ENST00000527916 LAMA4Q16363 1823 aa12.32□□□□□ -0.44
CPSF1-203ENST00000527916 MYO7AQ13402 2215 aa12.32□□□□□ -0.44
CPSF1-203ENST00000527916 H3BQ06 376 aaPredicted RBP12.32□□□□□ -0.44
CPSF1-203ENST00000527916 CALML3P27482 149 aa12.32□□□□□ -0.44
CPSF1-203ENST00000527916 ZP2Q05996 745 aa12.32□□□□□ -0.44
CPSF1-203ENST00000527916 RBL2Q08999 1139 aa12.32□□□□□ -0.44
CPSF1-203ENST00000527916 CCDC96Q2M329 555 aa12.32□□□□□ -0.44
CPSF1-203ENST00000527916 CCDC178Q5BJE1 867 aa12.32□□□□□ -0.44
CPSF1-203ENST00000527916 FAM117BQ6P1L5 589 aa12.32□□□□□ -0.44
CPSF1-203ENST00000527916 RNF207Q6ZRF8 634 aa12.32□□□□□ -0.44
CPSF1-203ENST00000527916 EP400NLQ6ZTU2 488 aa12.32□□□□□ -0.44
CPSF1-203ENST00000527916 DGKHQ86XP1 1220 aa12.32□□□□□ -0.44
CPSF1-203ENST00000527916 DNERQ8NFT8 737 aa12.32□□□□□ -0.44
CPSF1-203ENST00000527916 ESR2Q92731 530 aa12.32□□□□□ -0.44
CPSF1-203ENST00000527916 SAMD11Q96NU1 681 aa12.32□□□□□ -0.44
CPSF1-203ENST00000527916 TMEM47Q9BQJ4 181 aa12.32□□□□□ -0.44
CPSF1-203ENST00000527916 RANBP17Q9H2T7 1088 aaKnown RBP12.32□□□□□ -0.44
CPSF1-203ENST00000527916 TOMM22Q9NS69 142 aa12.32□□□□□ -0.44
CPSF1-203ENST00000527916 NFIBO00712 420 aa12.31□□□□□ -0.44
CPSF1-203ENST00000527916 NCK2O43639 380 aa12.31□□□□□ -0.44
CPSF1-203ENST00000527916 NBNO60934 754 aa12.31□□□□□ -0.44
CPSF1-203ENST00000527916 CKBP12277 381 aa12.31□□□□□ -0.44
CPSF1-203ENST00000527916 CASTP20810 708 aaKnown RBP12.31□□□□□ -0.44
CPSF1-203ENST00000527916 HAND2P61296 217 aa12.31□□□□□ -0.44
CPSF1-203ENST00000527916 GPNMBQ14956 572 aa12.31□□□□□ -0.44
CPSF1-203ENST00000527916 RRP12Q5JTH9 1297 aaKnown RBP12.31□□□□□ -0.44
CPSF1-203ENST00000527916 GDF6Q6KF10 455 aaPredicted RBP12.31□□□□□ -0.44
CPSF1-203ENST00000527916 HFE2Q6ZVN8 426 aa12.31□□□□□ -0.44
CPSF1-203ENST00000527916 ADHFE1Q8IWW8 467 aa12.31□□□□□ -0.44
CPSF1-203ENST00000527916 C7orf31Q8N865 590 aa12.31□□□□□ -0.44
CPSF1-203ENST00000527916 BANK1Q8NDB2 785 aa12.31□□□□□ -0.44
CPSF1-203ENST00000527916 COPS5Q92905 334 aa12.31□□□□□ -0.44
CPSF1-203ENST00000527916 PABPC5Q96DU9 382 aaKnown RBP12.31□□□□□ -0.44
CPSF1-203ENST00000527916 POP1Q99575 1024 aaKnown RBP12.31□□□□□ -0.44
CPSF1-203ENST00000527916 C17orf80Q9BSJ5 609 aa12.31□□□□□ -0.44
CPSF1-203ENST00000527916 MTMR7Q9Y216 660 aa12.31□□□□□ -0.44
CPSF1-203ENST00000527916 PTPRZ1P23471 2315 aaPredicted RBP12.31□□□□□ -0.44
CPSF1-203ENST00000527916 AMHP03971 560 aa12.3□□□□□ -0.44
CPSF1-203ENST00000527916 SNHG28P0DPA3 235 aa12.3□□□□□ -0.44
CPSF1-203ENST00000527916 PDHBP11177 359 aa12.3□□□□□ -0.44
CPSF1-203ENST00000527916 EDNRBP24530 442 aa12.3□□□□□ -0.44
CPSF1-203ENST00000527916 PDE4AP27815 886 aa12.3□□□□□ -0.44
CPSF1-203ENST00000527916 TTC22Q5TAA0 569 aa12.3□□□□□ -0.44
CPSF1-203ENST00000527916 SYDE2Q5VT97 1194 aa12.3□□□□□ -0.44
CPSF1-203ENST00000527916 SLC30A10Q6XR72 485 aa12.3□□□□□ -0.44
CPSF1-203ENST00000527916 TBC1D10CQ8IV04 446 aa12.3□□□□□ -0.44
CPSF1-203ENST00000527916 AFG1LQ8WV93 481 aa12.3□□□□□ -0.44
CPSF1-203ENST00000527916 ANKS1AQ92625 1134 aa12.3□□□□□ -0.44
CPSF1-203ENST00000527916 CACNA1HO95180 2353 aa12.3□□□□□ -0.44
CPSF1-203ENST00000527916 EMSYQ7Z589 1322 aa12.3□□□□□ -0.44
CPSF1-203ENST00000527916 ZFHX2Q9C0A1 2572 aaPredicted RBP12.29□□□□□ -0.44
CPSF1-203ENST00000527916 C19orf67A6NJJ6 358 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms