RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 KLHDC4Q8TBB5 520 aa6.42□□□□□ -1.38
CD44-225ENST00000527326 KIFAP3Q92845 792 aa6.42□□□□□ -1.38
CD44-225ENST00000527326 CYFIP2Q96F07 1278 aa6.42□□□□□ -1.38
CD44-225ENST00000527326 FGD4Q96M96 766 aa6.42□□□□□ -1.38
CD44-225ENST00000527326 SMC6Q96SB8 1091 aa6.42□□□□□ -1.38
CD44-225ENST00000527326 SELENOOQ9BVL4 669 aa6.42□□□□□ -1.38
CD44-225ENST00000527326 UBE2OQ9C0C9 1292 aaKnown RBP6.42□□□□□ -1.38
CD44-225ENST00000527326 EHD4Q9H223 541 aa6.42□□□□□ -1.38
CD44-225ENST00000527326 BHMT2Q9H2M3 363 aa6.42□□□□□ -1.38
CD44-225ENST00000527326 PCMTD2Q9NV79 361 aa6.42□□□□□ -1.38
CD44-225ENST00000527326 DOLKQ9UPQ8 538 aa6.42□□□□□ -1.38
CD44-225ENST00000527326 ABCA6Q8N139 1617 aa6.42□□□□□ -1.38
CD44-225ENST00000527326 NPATQ14207 1427 aa6.42□□□□□ -1.38
CD44-225ENST00000527326 DPPA5A6NC42 116 aa6.41□□□□□ -1.38
CD44-225ENST00000527326 ATP9BO43861 1147 aa6.41□□□□□ -1.38
CD44-225ENST00000527326 USO1O60763 962 aaKnown RBP6.41□□□□□ -1.38
CD44-225ENST00000527326 DIAPH2O60879 1101 aa6.41□□□□□ -1.38
CD44-225ENST00000527326 ALOX15P16050 662 aaPredicted RBP6.41□□□□□ -1.38
CD44-225ENST00000527326 MX2P20592 715 aa6.41□□□□□ -1.38
CD44-225ENST00000527326 SMARCA1P28370 1054 aa6.41□□□□□ -1.38
CD44-225ENST00000527326 HOXA10P31260 410 aaPredicted RBP6.41□□□□□ -1.38
CD44-225ENST00000527326 UBASH3AP57075 661 aa6.41□□□□□ -1.38
CD44-225ENST00000527326 NLRP12P59046 1061 aa6.41□□□□□ -1.38
CD44-225ENST00000527326 HDLBPQ00341 1268 aaKnown RBP6.41□□□□□ -1.38
CD44-225ENST00000527326 FAM160A1Q05DH4 1040 aa6.41□□□□□ -1.38
CD44-225ENST00000527326 SULT2A1Q06520 285 aa6.41□□□□□ -1.38
CD44-225ENST00000527326 TBX2Q13207 712 aaPredicted RBP6.41□□□□□ -1.38
CD44-225ENST00000527326 ZNF268Q14587 947 aaPredicted RBP6.41□□□□□ -1.38
CD44-225ENST00000527326 TAF11Q15544 211 aa6.41□□□□□ -1.38
CD44-225ENST00000527326 ZNF394Q53GI3 561 aa6.41□□□□□ -1.38
CD44-225ENST00000527326 GLE1Q53GS7 698 aaKnown RBP6.41□□□□□ -1.38
CD44-225ENST00000527326 ESCO1Q5FWF5 840 aa6.41□□□□□ -1.38
CD44-225ENST00000527326 KANK3Q6NY19 840 aa6.41□□□□□ -1.38
CD44-225ENST00000527326 CCNI2Q6ZMN8 369 aaPredicted RBP6.41□□□□□ -1.38
CD44-225ENST00000527326 CEP128Q6ZU80 1094 aa6.41□□□□□ -1.38
CD44-225ENST00000527326 ERICH1Q86X53 443 aa6.41□□□□□ -1.38
CD44-225ENST00000527326 CACNA2D3Q8IZS8 1091 aa6.41□□□□□ -1.38
CD44-225ENST00000527326 PHTF2Q8N3S3 785 aa6.41□□□□□ -1.38
CD44-225ENST00000527326 CFAP61Q8NHU2 1237 aa6.41□□□□□ -1.38
CD44-225ENST00000527326 AENQ8WTP8 325 aaKnown RBP6.41□□□□□ -1.38
CD44-225ENST00000527326 TSR2Q969E8 191 aaKnown RBP6.41□□□□□ -1.38
CD44-225ENST00000527326 HVCN1Q96D96 273 aa6.41□□□□□ -1.38
CD44-225ENST00000527326 NAF1Q96HR8 494 aaKnown RBP6.41□□□□□ -1.38
CD44-225ENST00000527326 PGBD1Q96JS3 809 aa6.41□□□□□ -1.38
CD44-225ENST00000527326 NDNQ99608 321 aa6.41□□□□□ -1.38
CD44-225ENST00000527326 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.41□□□□□ -1.38
CD44-225ENST00000527326 CCDC28BQ9BUN5 200 aa6.41□□□□□ -1.38
CD44-225ENST00000527326 MAK16Q9BXY0 300 aaKnown RBP6.41□□□□□ -1.38
CD44-225ENST00000527326 TM6SF1Q9BZW5 370 aa6.41□□□□□ -1.38
CD44-225ENST00000527326 NDST4Q9H3R1 872 aa6.41□□□□□ -1.38
CD44-225ENST00000527326 QPCTLQ9NXS2 382 aa6.41□□□□□ -1.38
CD44-225ENST00000527326 CROTQ9UKG9 612 aa6.41□□□□□ -1.38
CD44-225ENST00000527326 TTF2Q9UNY4 1162 aaKnown RBP6.41□□□□□ -1.38
CD44-225ENST00000527326 SH3GLB1Q9Y371 365 aa6.41□□□□□ -1.38
CD44-225ENST00000527326 NUP153P49790 1475 aaKnown RBP6.41□□□□□ -1.38
CD44-225ENST00000527326 CDK12Q9NYV4 1490 aaPredicted RBP6.41□□□□□ -1.38
CD44-225ENST00000527326 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.4□□□□□ -1.38
CD44-225ENST00000527326 DUOX2Q9NRD8 1548 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 SETD1AO15047 1707 aaKnown RBP6.4□□□□□ -1.38
CD44-225ENST00000527326 A0A1B0GVG6 124 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 HMGB1P1B2RPK0 211 aaPredicted RBP6.4□□□□□ -1.38
CD44-225ENST00000527326 PIK3CDO00329 1044 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 DNM1LO00429 736 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 WDR46O15213 610 aaKnown RBP6.4□□□□□ -1.38
CD44-225ENST00000527326 PPIP5K2O43314 1243 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 TIMM44O43615 452 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 PFDN1O60925 122 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 IFIT2P09913 472 aaKnown RBP6.4□□□□□ -1.38
CD44-225ENST00000527326 CCT6AP40227 531 aaKnown RBP6.4□□□□□ -1.38
CD44-225ENST00000527326 MDH1P40925 334 aaKnown RBP6.4□□□□□ -1.38
CD44-225ENST00000527326 PDE1AP54750 535 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 OXCT1P55809 520 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 ADAM9Q13443 819 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 SAFB2Q14151 953 aaKnown RBP eCLIP6.4□□□□□ -1.38
CD44-225ENST00000527326 PPP1R7Q15435 360 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 OXLD1Q5BKU9 147 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 ANKRD20A2Q5SQ80 823 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 ANKRD20A1Q5TYW2 823 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 ANKRD20A3Q5VUR7 823 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 GALNT17Q6IS24 598 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 HIBCHQ6NVY1 386 aaPredicted RBP6.4□□□□□ -1.38
CD44-225ENST00000527326 EMBQ6PCB8 327 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 TOGARAM2Q6ZUX3 1019 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 CDC37L1Q7L3B6 337 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 ZNF554Q86TJ5 538 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 DZIP1Q86YF9 867 aaKnown RBP6.4□□□□□ -1.38
CD44-225ENST00000527326 ANKRD13BQ86YJ7 626 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 CD302Q8IX05 232 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 C16orf71Q8IYS4 520 aaPredicted RBP6.4□□□□□ -1.38
CD44-225ENST00000527326 CNBD1Q8NA66 436 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 NSUN7Q8NE18 718 aaKnown RBP6.4□□□□□ -1.38
CD44-225ENST00000527326 NEDD1Q8NHV4 660 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 ATRIPQ8WXE1 791 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 CTNNBL1Q8WYA6 563 aaPredicted RBP6.4□□□□□ -1.38
CD44-225ENST00000527326 RIN2Q8WYP3 895 aaPredicted RBP6.4□□□□□ -1.38
CD44-225ENST00000527326 ACDQ96AP0 544 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 MAML3Q96JK9 1138 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 GDAP1L1Q96MZ0 367 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 PANX2Q96RD6 677 aa6.4□□□□□ -1.38
CD44-225ENST00000527326 OXCT2Q9BYC2 517 aaPredicted RBP6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms