RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 CNKSR3Q6P9H4 555 aa6.32□□□□□ -1.4
CD44-217ENST00000525348 KCNT2Q6UVM3 1135 aa6.32□□□□□ -1.4
CD44-217ENST00000525348 USP53Q70EK8 1073 aa6.32□□□□□ -1.4
CD44-217ENST00000525348 RIOX2Q8IUF8 465 aa6.32□□□□□ -1.4
CD44-217ENST00000525348 SIAH1Q8IUQ4 282 aa6.32□□□□□ -1.4
CD44-217ENST00000525348 ZNF669Q96BR6 464 aaPredicted RBP6.32□□□□□ -1.4
CD44-217ENST00000525348 HIRIP3Q9BW71 556 aaPredicted RBP6.32□□□□□ -1.4
CD44-217ENST00000525348 PPARGC1AQ9UBK2 798 aaKnown RBP6.32□□□□□ -1.4
CD44-217ENST00000525348 NUDT5Q9UKK9 219 aa6.32□□□□□ -1.4
CD44-217ENST00000525348 TRAV20A0A0B4J274 112 aa6.31□□□□□ -1.4
CD44-217ENST00000525348 RFXAPO00287 272 aa6.31□□□□□ -1.4
CD44-217ENST00000525348 PFKLP17858 780 aa6.31□□□□□ -1.4
CD44-217ENST00000525348 LSAMPQ13449 338 aa6.31□□□□□ -1.4
CD44-217ENST00000525348 TARBP2Q15633 366 aaKnown RBP6.31□□□□□ -1.4
CD44-217ENST00000525348 VMACQ2NL98 169 aa6.31□□□□□ -1.4
CD44-217ENST00000525348 MTERF2Q49AM1 385 aa6.31□□□□□ -1.4
CD44-217ENST00000525348 FBLN7Q53RD9 439 aa6.31□□□□□ -1.4
CD44-217ENST00000525348 LCE4AQ5TA78 99 aa6.31□□□□□ -1.4
CD44-217ENST00000525348 NSMFQ6X4W1 530 aa6.31□□□□□ -1.4
CD44-217ENST00000525348 DCP2Q8IU60 420 aaKnown RBP6.31□□□□□ -1.4
CD44-217ENST00000525348 LRRC47Q8N1G4 583 aaKnown RBP6.31□□□□□ -1.4
CD44-217ENST00000525348 TRMT2BQ96GJ1 504 aaKnown RBP6.31□□□□□ -1.4
CD44-217ENST00000525348 TMEM169Q96HH4 297 aa6.31□□□□□ -1.4
CD44-217ENST00000525348 SYT3Q9BQG1 590 aa6.31□□□□□ -1.4
CD44-217ENST00000525348 PHF20Q9BVI0 1012 aa6.31□□□□□ -1.4
CD44-217ENST00000525348 RNF38Q9H0F5 515 aa6.31□□□□□ -1.4
CD44-217ENST00000525348 SNTG2Q9NY99 539 aa6.31□□□□□ -1.4
CD44-217ENST00000525348 MYO1BO43795 1136 aa6.3□□□□□ -1.4
CD44-217ENST00000525348 SLC6A11P48066 632 aa6.3□□□□□ -1.4
CD44-217ENST00000525348 AFF3P51826 1226 aaKnown RBP6.3□□□□□ -1.4
CD44-217ENST00000525348 GTF2A2P52657 109 aa6.3□□□□□ -1.4
CD44-217ENST00000525348 FOXO4P98177 505 aa6.3□□□□□ -1.4
CD44-217ENST00000525348 SSRP1Q08945 709 aaKnown RBP6.3□□□□□ -1.4
CD44-217ENST00000525348 SLC9A5Q14940 896 aa6.3□□□□□ -1.4
CD44-217ENST00000525348 MROH9Q5TGP6 573 aa6.3□□□□□ -1.4
CD44-217ENST00000525348 PWWP2AQ96N64 755 aa6.3□□□□□ -1.4
CD44-217ENST00000525348 DEPDC7Q96QD5 511 aa6.3□□□□□ -1.4
CD44-217ENST00000525348 GPR27Q9NS67 375 aa6.3□□□□□ -1.4
CD44-217ENST00000525348 CLDND1Q9NY35 253 aa6.3□□□□□ -1.4
CD44-217ENST00000525348 PALD1Q9ULE6 856 aa6.3□□□□□ -1.4
CD44-217ENST00000525348 ASXL2Q76L83 1435 aa6.3□□□□□ -1.4
CD44-217ENST00000525348 KRTAP4-8A0A0G2JLE6 195 aa6.29□□□□□ -1.4
CD44-217ENST00000525348 H7BY64 318 aa6.29□□□□□ -1.4
CD44-217ENST00000525348 TRIM13O60858 407 aa6.29□□□□□ -1.4
CD44-217ENST00000525348 ZBTB7AO95365 584 aa6.29□□□□□ -1.4
CD44-217ENST00000525348 C8BP07358 591 aa6.29□□□□□ -1.4
CD44-217ENST00000525348 FAM153BP0C7A2 387 aa6.29□□□□□ -1.4
CD44-217ENST00000525348 NCAM1P13591 858 aa6.29□□□□□ -1.4
CD44-217ENST00000525348 HTRA3P83110 453 aa6.29□□□□□ -1.4
CD44-217ENST00000525348 VWA3BQ502W6 1294 aa6.29□□□□□ -1.4
CD44-217ENST00000525348 TCERG1LQ5VWI1 586 aa6.29□□□□□ -1.4
CD44-217ENST00000525348 B3GNT8Q7Z7M8 397 aa6.29□□□□□ -1.4
CD44-217ENST00000525348 TP53I13Q8NBR0 393 aaPredicted RBP6.29□□□□□ -1.4
CD44-217ENST00000525348 SEC14L1Q92503 715 aa6.29□□□□□ -1.4
CD44-217ENST00000525348 CHAMP1Q96JM3 812 aa6.29□□□□□ -1.4
CD44-217ENST00000525348 NOX5Q96PH1 765 aa6.29□□□□□ -1.4
CD44-217ENST00000525348 DNAJC2Q99543 621 aaKnown RBP6.29□□□□□ -1.4
CD44-217ENST00000525348 FFAR3O14843 346 aa6.28□□□□□ -1.4
CD44-217ENST00000525348 CACNB2Q08289 660 aaPredicted RBP6.28□□□□□ -1.4
CD44-217ENST00000525348 SF3A1Q15459 793 aaKnown RBP6.28□□□□□ -1.4
CD44-217ENST00000525348 FAM209AQ5JX71 171 aa6.28□□□□□ -1.4
CD44-217ENST00000525348 MIB1Q86YT6 1006 aa6.28□□□□□ -1.4
CD44-217ENST00000525348 FAM26EQ8N5C1 309 aa6.28□□□□□ -1.4
CD44-217ENST00000525348 SMARCC2Q8TAQ2 1214 aa6.28□□□□□ -1.4
CD44-217ENST00000525348 PMFBP1Q8TBY8 1022 aa6.28□□□□□ -1.4
CD44-217ENST00000525348 FNIP1Q8TF40 1166 aa6.28□□□□□ -1.4
CD44-217ENST00000525348 DCAF4Q8WV16 495 aa6.28□□□□□ -1.4
CD44-217ENST00000525348 SREK1Q8WXA9 508 aaKnown RBP6.28□□□□□ -1.4
CD44-217ENST00000525348 CPA5Q8WXQ8 436 aa6.28□□□□□ -1.4
CD44-217ENST00000525348 EXOC2Q96KP1 924 aa6.28□□□□□ -1.4
CD44-217ENST00000525348 JAM3Q9BX67 310 aa6.28□□□□□ -1.4
CD44-217ENST00000525348 C6orf222P0C671 652 aaPredicted RBP6.27□□□□□ -1.41
CD44-217ENST00000525348 DLX2Q07687 328 aaPredicted RBP6.27□□□□□ -1.41
CD44-217ENST00000525348 IFRD2Q12894 506 aaPredicted RBP6.27□□□□□ -1.41
CD44-217ENST00000525348 STYK1Q6J9G0 422 aa6.27□□□□□ -1.41
CD44-217ENST00000525348 RSPO2Q6UXX9 243 aaPredicted RBP6.27□□□□□ -1.41
CD44-217ENST00000525348 LBX2Q6XYB7 198 aa6.27□□□□□ -1.41
CD44-217ENST00000525348 TMEM151BQ8IW70 566 aa6.27□□□□□ -1.41
CD44-217ENST00000525348 ADGRG2Q8IZP9 1017 aa6.27□□□□□ -1.41
CD44-217ENST00000525348 ZBTB38Q8NAP3 1195 aaPredicted RBP6.27□□□□□ -1.41
CD44-217ENST00000525348 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.27□□□□□ -1.41
CD44-217ENST00000525348 AP5M1Q9H0R1 490 aa6.27□□□□□ -1.41
CD44-217ENST00000525348 COA3Q9Y2R0 106 aaPredicted RBP6.27□□□□□ -1.41
CD44-217ENST00000525348 PMF1-BGLAPU3KQ54 211 aa6.27□□□□□ -1.41
CD44-217ENST00000525348 KDM2BQ8NHM5 1336 aa6.26□□□□□ -1.41
CD44-217ENST00000525348 A0A1B0GTL3 188 aa6.26□□□□□ -1.41
CD44-217ENST00000525348 TADA3O75528 432 aa6.26□□□□□ -1.41
CD44-217ENST00000525348 EMC4Q5J8M3 183 aa6.26□□□□□ -1.41
CD44-217ENST00000525348 LRP10Q7Z4F1 713 aa6.26□□□□□ -1.41
CD44-217ENST00000525348 MILR1Q7Z6M3 343 aa6.26□□□□□ -1.41
CD44-217ENST00000525348 DDX11Q96FC9 970 aa6.26□□□□□ -1.41
CD44-217ENST00000525348 KCNC2Q96PR1 638 aa6.26□□□□□ -1.41
CD44-217ENST00000525348 DNAJC7Q99615 494 aa6.26□□□□□ -1.41
CD44-217ENST00000525348 ZNF652Q9Y2D9 606 aa6.26□□□□□ -1.41
CD44-217ENST00000525348 FAN1Q9Y2M0 1017 aa6.26□□□□□ -1.41
CD44-217ENST00000525348 TRAF6Q9Y4K3 522 aa6.26□□□□□ -1.41
CD44-217ENST00000525348 TRBV23-1A0A0A0MS06 115 aa6.25□□□□□ -1.41
CD44-217ENST00000525348 TCRBV5S2A0A599 114 aa6.25□□□□□ -1.41
CD44-217ENST00000525348 BMP7P18075 431 aa6.25□□□□□ -1.41
CD44-217ENST00000525348 STAT5AP42229 794 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms