RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 BAG6P46379 1132 aa11.25□□□□□ -0.61
MCF2-209ENST00000520602 CCDC93Q567U6 631 aa11.25□□□□□ -0.61
MCF2-209ENST00000520602 FAM83BQ5T0W9 1011 aa11.25□□□□□ -0.61
MCF2-209ENST00000520602 LSM14BQ9BX40 385 aaKnown RBP11.25□□□□□ -0.61
MCF2-209ENST00000520602 ADAMTS7Q9UKP4 1686 aa11.25□□□□□ -0.61
MCF2-209ENST00000520602 POTEFA5A3E0 1075 aa11.25□□□□□ -0.61
MCF2-209ENST00000520602 ARHGEF35A5YM69 484 aa11.25□□□□□ -0.61
MCF2-209ENST00000520602 NDUFA10O95299 355 aa11.25□□□□□ -0.61
MCF2-209ENST00000520602 NDUFB10O96000 172 aa11.25□□□□□ -0.61
MCF2-209ENST00000520602 POTEIP0CG38 1075 aa11.25□□□□□ -0.61
MCF2-209ENST00000520602 ZNF18P17022 549 aa11.25□□□□□ -0.61
MCF2-209ENST00000520602 POLD1P28340 1107 aa11.25□□□□□ -0.61
MCF2-209ENST00000520602 POLR2FP61218 127 aaKnown RBP11.25□□□□□ -0.61
MCF2-209ENST00000520602 FKBP3Q00688 224 aaKnown RBP11.25□□□□□ -0.61
MCF2-209ENST00000520602 TMEM132AQ24JP5 1023 aa11.25□□□□□ -0.61
MCF2-209ENST00000520602 ZFYVE27Q5T4F4 411 aa11.25□□□□□ -0.61
MCF2-209ENST00000520602 POTEGQ6S5H5 508 aa11.25□□□□□ -0.61
MCF2-209ENST00000520602 POTEEQ6S8J3 1075 aa11.25□□□□□ -0.61
MCF2-209ENST00000520602 UNC13DQ70J99 1090 aa11.25□□□□□ -0.61
MCF2-209ENST00000520602 SECISBP2LQ93073 1101 aaKnown RBP11.25□□□□□ -0.61
MCF2-209ENST00000520602 FAM163AQ96GL9 167 aaPredicted RBP11.25□□□□□ -0.61
MCF2-209ENST00000520602 CHP1Q99653 195 aa11.25□□□□□ -0.61
MCF2-209ENST00000520602 EFCAB8A8MWE9 144 aa11.25□□□□□ -0.61
MCF2-209ENST00000520602 POTEB2H3BUK9 544 aa11.25□□□□□ -0.61
MCF2-209ENST00000520602 PHACTR2O75167 634 aa11.25□□□□□ -0.61
MCF2-209ENST00000520602 NT5DC1Q5TFE4 455 aa11.25□□□□□ -0.61
MCF2-209ENST00000520602 LRCH2Q5VUJ6 765 aa11.25□□□□□ -0.61
MCF2-209ENST00000520602 RAD9BQ6WBX8 426 aa11.25□□□□□ -0.61
MCF2-209ENST00000520602 DCAF4Q8WV16 495 aa11.25□□□□□ -0.61
MCF2-209ENST00000520602 ANKS1AQ92625 1134 aa11.25□□□□□ -0.61
MCF2-209ENST00000520602 RAD54LQ92698 747 aa11.25□□□□□ -0.61
MCF2-209ENST00000520602 NDST4Q9H3R1 872 aa11.25□□□□□ -0.61
MCF2-209ENST00000520602 ATF5Q9Y2D1 282 aaPredicted RBP11.25□□□□□ -0.61
MCF2-209ENST00000520602 MYMKA6NI61 221 aa11.24□□□□□ -0.61
MCF2-209ENST00000520602 EPB41P11171 864 aaKnown RBP11.24□□□□□ -0.61
MCF2-209ENST00000520602 KCNB1Q14721 858 aa11.24□□□□□ -0.61
MCF2-209ENST00000520602 SLC9C1Q4G0N8 1177 aa11.24□□□□□ -0.61
MCF2-209ENST00000520602 BHMT2Q9H2M3 363 aa11.24□□□□□ -0.61
MCF2-209ENST00000520602 N4BP2Q86UW6 1770 aaPredicted RBP11.24□□□□□ -0.61
MCF2-209ENST00000520602 NUP98P52948 1817 aa11.24□□□□□ -0.61
MCF2-209ENST00000520602 GYPCP04921 128 aa11.24□□□□□ -0.61
MCF2-209ENST00000520602 NR2F2P24468 414 aa11.24□□□□□ -0.61
MCF2-209ENST00000520602 SHMT1P34896 483 aa11.24□□□□□ -0.61
MCF2-209ENST00000520602 DAGLBQ8NCG7 672 aa11.24□□□□□ -0.61
MCF2-209ENST00000520602 PIGOQ8TEQ8 1089 aa11.24□□□□□ -0.61
MCF2-209ENST00000520602 PRMT6Q96LA8 375 aaPredicted RBP11.24□□□□□ -0.61
MCF2-209ENST00000520602 CENPHQ9H3R5 247 aa11.24□□□□□ -0.61
MCF2-209ENST00000520602 HAUS4Q9H6D7 363 aa11.24□□□□□ -0.61
MCF2-209ENST00000520602 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.24□□□□□ -0.61
MCF2-209ENST00000520602 EMILIN3Q9NT22 766 aa11.24□□□□□ -0.61
MCF2-209ENST00000520602 ARMCX3Q9UH62 379 aaPredicted RBP11.24□□□□□ -0.61
MCF2-209ENST00000520602 LIMA1Q9UHB6 759 aaKnown RBP11.24□□□□□ -0.61
MCF2-209ENST00000520602 CCPG1Q9ULG6 757 aa11.24□□□□□ -0.61
MCF2-209ENST00000520602 RHOBTB3O94955 611 aa11.24□□□□□ -0.61
MCF2-209ENST00000520602 TAL1P17542 331 aaPredicted RBP11.24□□□□□ -0.61
MCF2-209ENST00000520602 CKAP4Q07065 602 aaKnown RBP11.24□□□□□ -0.61
MCF2-209ENST00000520602 KLHL30Q0D2K2 578 aa11.24□□□□□ -0.61
MCF2-209ENST00000520602 CTTNQ14247 550 aaKnown RBP11.24□□□□□ -0.61
MCF2-209ENST00000520602 MAN2A1Q16706 1144 aa11.24□□□□□ -0.61
MCF2-209ENST00000520602 APOBEC3HQ6NTF7 200 aaKnown RBP11.24□□□□□ -0.61
MCF2-209ENST00000520602 ZNF710Q8N1W2 664 aa11.24□□□□□ -0.61
MCF2-209ENST00000520602 TNFRSF25Q93038 417 aa11.24□□□□□ -0.61
MCF2-209ENST00000520602 SHISA4Q96DD7 197 aa11.24□□□□□ -0.61
MCF2-209ENST00000520602 INTS13Q9NVM9 706 aa11.24□□□□□ -0.61
MCF2-209ENST00000520602 MRPL11Q9Y3B7 192 aaKnown RBP11.24□□□□□ -0.61
MCF2-209ENST00000520602 RABGAP1Q9Y3P9 1069 aa11.24□□□□□ -0.61
MCF2-209ENST00000520602 NPHP3-ACAD11A0A0J9YXS1 232 aa11.23□□□□□ -0.61
MCF2-209ENST00000520602 CLIC2O15247 247 aa11.23□□□□□ -0.61
MCF2-209ENST00000520602 SEC31AO94979 1220 aaKnown RBP11.23□□□□□ -0.61
MCF2-209ENST00000520602 GTF2F1P35269 517 aaKnown RBP eCLIP11.23□□□□□ -0.61
MCF2-209ENST00000520602 CETN1Q12798 172 aa11.23□□□□□ -0.61
MCF2-209ENST00000520602 PRPF4BQ13523 1007 aaKnown RBP11.23□□□□□ -0.61
MCF2-209ENST00000520602 TBC1D10BQ4KMP7 808 aaPredicted RBP11.23□□□□□ -0.61
MCF2-209ENST00000520602 SFMBT2Q5VUG0 894 aa11.23□□□□□ -0.61
MCF2-209ENST00000520602 GIMAP8Q8ND71 665 aaPredicted RBP11.23□□□□□ -0.61
MCF2-209ENST00000520602 GDAP1L1Q96MZ0 367 aa11.23□□□□□ -0.61
MCF2-209ENST00000520602 CDC23Q9UJX2 597 aa11.23□□□□□ -0.61
MCF2-209ENST00000520602 KRT13P13646 458 aa11.23□□□□□ -0.61
MCF2-209ENST00000520602 CYP2J2P51589 502 aa11.23□□□□□ -0.61
MCF2-209ENST00000520602 NPY5RQ15761 445 aa11.23□□□□□ -0.61
MCF2-209ENST00000520602 PTPROQ16827 1216 aa11.23□□□□□ -0.61
MCF2-209ENST00000520602 MAP9Q49MG5 647 aa11.23□□□□□ -0.61
MCF2-209ENST00000520602 RIOX1Q9H6W3 641 aa11.23□□□□□ -0.61
MCF2-209ENST00000520602 MYO6Q9UM54 1294 aa11.23□□□□□ -0.61
MCF2-209ENST00000520602 SAR1BQ9Y6B6 198 aa11.23□□□□□ -0.61
MCF2-209ENST00000520602 DOT1LQ8TEK3 1739 aa11.23□□□□□ -0.61
MCF2-209ENST00000520602 BUB1O43683 1085 aa11.23□□□□□ -0.61
MCF2-209ENST00000520602 CALUO43852 315 aaPredicted RBP11.23□□□□□ -0.61
MCF2-209ENST00000520602 FLOT1O75955 427 aa11.23□□□□□ -0.61
MCF2-209ENST00000520602 PRPF6O94906 941 aaKnown RBP11.23□□□□□ -0.61
MCF2-209ENST00000520602 PMS1P54277 932 aaKnown RBP11.23□□□□□ -0.61
MCF2-209ENST00000520602 ZBED6P86452 979 aa11.23□□□□□ -0.61
MCF2-209ENST00000520602 TTLL12Q14166 644 aaPredicted RBP11.23□□□□□ -0.61
MCF2-209ENST00000520602 E2F4Q16254 413 aa11.23□□□□□ -0.61
MCF2-209ENST00000520602 VWA3BQ502W6 1294 aa11.23□□□□□ -0.61
MCF2-209ENST00000520602 C15orf52Q6ZUT6 534 aaKnown RBP11.23□□□□□ -0.61
MCF2-209ENST00000520602 SH3RF1Q7Z6J0 888 aa11.23□□□□□ -0.61
MCF2-209ENST00000520602 NHEJ1Q9H9Q4 299 aaPredicted RBP11.23□□□□□ -0.61
MCF2-209ENST00000520602 SORBS3O60504 671 aa11.22□□□□□ -0.61
MCF2-209ENST00000520602 XRCC5P13010 732 aaKnown RBP11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms