RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 PLD6Q8N2A8 252 aaKnown RBP9.88□□□□□ -0.83
LSM1-202ENST00000520286 CISD2Q8N5K1 135 aaKnown RBP9.88□□□□□ -0.83
LSM1-202ENST00000520286 C2orf69Q8N8R5 385 aa9.88□□□□□ -0.83
LSM1-202ENST00000520286 PANK1Q8TE04 598 aa9.88□□□□□ -0.83
LSM1-202ENST00000520286 EMC7Q9NPA0 242 aa9.88□□□□□ -0.83
LSM1-202ENST00000520286 CATSPERZQ9NTU4 200 aa9.88□□□□□ -0.83
LSM1-202ENST00000520286 SPTLC3Q9NUV7 552 aa9.88□□□□□ -0.83
LSM1-202ENST00000520286 ERVK13-1Q9NX77 482 aa9.88□□□□□ -0.83
LSM1-202ENST00000520286 GABBR1Q9UBS5 961 aa9.88□□□□□ -0.83
LSM1-202ENST00000520286 SNX11Q9Y5W9 270 aa9.88□□□□□ -0.83
LSM1-202ENST00000520286 RNF225M0QZC1 329 aaPredicted RBP9.87□□□□□ -0.83
LSM1-202ENST00000520286 AKAP10O43572 662 aa9.87□□□□□ -0.83
LSM1-202ENST00000520286 KPNA1P52294 538 aaPredicted RBP9.87□□□□□ -0.83
LSM1-202ENST00000520286 TBX4P57082 545 aa9.87□□□□□ -0.83
LSM1-202ENST00000520286 EGR3Q06889 387 aa9.87□□□□□ -0.83
LSM1-202ENST00000520286 LRRC41Q15345 812 aa9.87□□□□□ -0.83
LSM1-202ENST00000520286 CRY1Q16526 586 aa9.87□□□□□ -0.83
LSM1-202ENST00000520286 CPSF6Q16630 551 aaKnown RBP eCLIP9.87□□□□□ -0.83
LSM1-202ENST00000520286 ZBTB46Q86UZ6 589 aa9.87□□□□□ -0.83
LSM1-202ENST00000520286 NETO1Q8TDF5 533 aa9.87□□□□□ -0.83
LSM1-202ENST00000520286 CHMP4CQ96CF2 233 aa9.87□□□□□ -0.83
LSM1-202ENST00000520286 KCNJ15Q99712 375 aa9.87□□□□□ -0.83
LSM1-202ENST00000520286 CDIP1Q9H305 208 aa9.87□□□□□ -0.83
LSM1-202ENST00000520286 AASDHPPTQ9NRN7 309 aa9.87□□□□□ -0.83
LSM1-202ENST00000520286 CLDND1Q9NY35 253 aa9.87□□□□□ -0.83
LSM1-202ENST00000520286 ZIM2Q9NZV7 527 aa9.87□□□□□ -0.83
LSM1-202ENST00000520286 CBLCQ9ULV8 474 aa9.87□□□□□ -0.83
LSM1-202ENST00000520286 PITPNM2Q9BZ72 1349 aa9.86□□□□□ -0.83
LSM1-202ENST00000520286 TMEM265A0A087WTH1 108 aa9.86□□□□□ -0.83
LSM1-202ENST00000520286 NPHS1O60500 1241 aa9.86□□□□□ -0.83
LSM1-202ENST00000520286 ULK1O75385 1050 aa9.86□□□□□ -0.83
LSM1-202ENST00000520286 SCGB1D2O95969 90 aa9.86□□□□□ -0.83
LSM1-202ENST00000520286 IGLV1-40P01703 118 aa9.86□□□□□ -0.83
LSM1-202ENST00000520286 ESR1P03372 595 aa9.86□□□□□ -0.83
LSM1-202ENST00000520286 ARHGAP44Q17R89 818 aa9.86□□□□□ -0.83
LSM1-202ENST00000520286 PASD1Q8IV76 773 aa9.86□□□□□ -0.83
LSM1-202ENST00000520286 TMEM52Q8NDY8 209 aa9.86□□□□□ -0.83
LSM1-202ENST00000520286 HOOK2Q96ED9 719 aa9.86□□□□□ -0.83
LSM1-202ENST00000520286 ATP13A1Q9HD20 1204 aa9.86□□□□□ -0.83
LSM1-202ENST00000520286 SPEF1Q9Y4P9 236 aa9.86□□□□□ -0.83
LSM1-202ENST00000520286 CCDC194A0A1B0GVG4 234 aa9.85□□□□□ -0.83
LSM1-202ENST00000520286 GSC2O15499 205 aa9.85□□□□□ -0.83
LSM1-202ENST00000520286 CYP26A1O43174 497 aa9.85□□□□□ -0.83
LSM1-202ENST00000520286 PRC1O43663 620 aa9.85□□□□□ -0.83
LSM1-202ENST00000520286 PIN1Q13526 163 aaPredicted RBP9.85□□□□□ -0.83
LSM1-202ENST00000520286 FCRL2Q96LA5 508 aaPredicted RBP9.85□□□□□ -0.83
LSM1-202ENST00000520286 TPSG1Q9NRR2 321 aa9.85□□□□□ -0.83
LSM1-202ENST00000520286 BTG4Q9NY30 223 aa9.85□□□□□ -0.83
LSM1-202ENST00000520286 TNKSO95271 1327 aa9.84□□□□□ -0.83
LSM1-202ENST00000520286 E2F8A0AVK6 867 aa9.84□□□□□ -0.83
LSM1-202ENST00000520286 FBXO21O94952 628 aa9.84□□□□□ -0.83
LSM1-202ENST00000520286 LACTBP83111 547 aaPredicted RBP9.84□□□□□ -0.83
LSM1-202ENST00000520286 FAPQ12884 760 aa9.84□□□□□ -0.83
LSM1-202ENST00000520286 HLA-DQA1Q5Y7H0 255 aa9.84□□□□□ -0.83
LSM1-202ENST00000520286 HDGFL2Q7Z4V5 671 aaPredicted RBP9.84□□□□□ -0.83
LSM1-202ENST00000520286 CHPFQ8IZ52 775 aa9.84□□□□□ -0.83
LSM1-202ENST00000520286 DPF3Q92784 378 aa9.84□□□□□ -0.83
LSM1-202ENST00000520286 RELTQ969Z4 430 aa9.84□□□□□ -0.83
LSM1-202ENST00000520286 MENTQ9BUN1 341 aa9.84□□□□□ -0.83
LSM1-202ENST00000520286 JAM3Q9BX67 310 aa9.84□□□□□ -0.83
LSM1-202ENST00000520286 OXSMQ9NWU1 459 aa9.84□□□□□ -0.83
LSM1-202ENST00000520286 ARID4BQ4LE39 1312 aaPredicted RBP9.83□□□□□ -0.84
LSM1-202ENST00000520286 FAM181BA6NEQ2 426 aa9.83□□□□□ -0.84
LSM1-202ENST00000520286 H7BY64 318 aa9.83□□□□□ -0.84
LSM1-202ENST00000520286 MAP4K4O95819 1239 aaPredicted RBP9.83□□□□□ -0.84
LSM1-202ENST00000520286 OTOP1Q7RTM1 612 aa9.83□□□□□ -0.84
LSM1-202ENST00000520286 NLRP10Q86W26 655 aa9.83□□□□□ -0.84
LSM1-202ENST00000520286 CCDC146Q8IYE0 955 aa9.83□□□□□ -0.84
LSM1-202ENST00000520286 TMEM169Q96HH4 297 aa9.83□□□□□ -0.84
LSM1-202ENST00000520286 POLR3GLQ9BT43 218 aa9.83□□□□□ -0.84
LSM1-202ENST00000520286 H2AFY2Q9P0M6 372 aaPredicted RBP9.83□□□□□ -0.84
LSM1-202ENST00000520286 ZNF281Q9Y2X9 895 aa9.83□□□□□ -0.84
LSM1-202ENST00000520286 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.82□□□□□ -0.84
LSM1-202ENST00000520286 WTIPA6NIX2 430 aaPredicted RBP9.82□□□□□ -0.84
LSM1-202ENST00000520286 K7ESF4 209 aa9.82□□□□□ -0.84
LSM1-202ENST00000520286 PDE6AP16499 860 aa9.82□□□□□ -0.84
LSM1-202ENST00000520286 YBX3P16989 372 aaKnown RBP eCLIP9.82□□□□□ -0.84
LSM1-202ENST00000520286 FSTP19883 344 aa9.82□□□□□ -0.84
LSM1-202ENST00000520286 CREB3L3Q68CJ9 461 aa9.82□□□□□ -0.84
LSM1-202ENST00000520286 CEP68Q76N32 757 aa9.82□□□□□ -0.84
LSM1-202ENST00000520286 OSTM1Q86WC4 334 aa9.82□□□□□ -0.84
LSM1-202ENST00000520286 CDH19Q9H159 772 aa9.82□□□□□ -0.84
LSM1-202ENST00000520286 VTA1Q9NP79 307 aa9.82□□□□□ -0.84
LSM1-202ENST00000520286 ADGRE2Q9UHX3 823 aa9.82□□□□□ -0.84
LSM1-202ENST00000520286 KRT37O76014 449 aa9.81□□□□□ -0.84
LSM1-202ENST00000520286 SESN3P58005 492 aa9.81□□□□□ -0.84
LSM1-202ENST00000520286 GPR19Q15760 415 aa9.81□□□□□ -0.84
LSM1-202ENST00000520286 ABCB5Q2M3G0 1257 aa9.81□□□□□ -0.84
LSM1-202ENST00000520286 MYO1HQ8N1T3 1032 aa9.81□□□□□ -0.84
LSM1-202ENST00000520286 EFHBQ8N7U6 833 aa9.81□□□□□ -0.84
LSM1-202ENST00000520286 CLRN3Q8NCR9 226 aa9.81□□□□□ -0.84
LSM1-202ENST00000520286 SLC5A5Q92911 643 aa9.81□□□□□ -0.84
LSM1-202ENST00000520286 TRMT2BQ96GJ1 504 aaKnown RBP9.81□□□□□ -0.84
LSM1-202ENST00000520286 AHCYL2Q96HN2 611 aaKnown RBP9.81□□□□□ -0.84
LSM1-202ENST00000520286 HRASLS5Q96KN8 279 aa9.81□□□□□ -0.84
LSM1-202ENST00000520286 BOCQ9BWV1 1114 aa9.81□□□□□ -0.84
LSM1-202ENST00000520286 PIM2Q9P1W9 311 aa9.81□□□□□ -0.84
LSM1-202ENST00000520286 ZC3H7BQ9UGR2 993 aaKnown RBP9.81□□□□□ -0.84
LSM1-202ENST00000520286 NACADO15069 1562 aa9.8□□□□□ -0.84
LSM1-202ENST00000520286 SLC12A8A0AV02 714 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms