RNA–Protein interactions for RNA: ENST00000518930.1

PCM1-209, Transcript of pericentriolar material 1, human

TSL 3

Gene PCM1, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCM1-209	ENST00000518930	NONO	Q15233	471 aa	Known RBP eCLIP	27.67	■■■□□ 2.02
PCM1-209	ENST00000518930	VSIG10L	Q86VR7	867 aa		27.67	■■■□□ 2.02
PCM1-209	ENST00000518930	SPRYD3	Q8NCJ5	442 aa		27.67	■■■□□ 2.02
PCM1-209	ENST00000518930	MYC	P01106	439 aa	Predicted RBP	27.66	■■■□□ 2.02
PCM1-209	ENST00000518930	ARHGAP4	P98171	946 aa		27.66	■■■□□ 2.02
PCM1-209	ENST00000518930	NR5A1	Q13285	461 aa		27.66	■■■□□ 2.02
PCM1-209	ENST00000518930	BTBD18	B2RXH4	712 aa		27.65	■■■□□ 2.02
PCM1-209	ENST00000518930	CCND3	P30281	292 aa	Predicted RBP	27.65	■■■□□ 2.02
PCM1-209	ENST00000518930	GNPTAB	Q3T906	1256 aa		27.65	■■■□□ 2.02
PCM1-209	ENST00000518930	TRPV1	Q8NER1	839 aa		27.65	■■■□□ 2.02
PCM1-209	ENST00000518930	KATNBL1	Q9H079	304 aa		27.65	■■■□□ 2.02
PCM1-209	ENST00000518930	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	27.65	■■■□□ 2.02	3e-6	■■□□□ 13
PCM1-209	ENST00000518930	ZNF865	P0CJ78	1059 aa	Predicted RBP	27.64	■■■□□ 2.02
PCM1-209	ENST00000518930	CCL5	P13501	91 aa		27.64	■■■□□ 2.02
PCM1-209	ENST00000518930	AKR1A1	P14550	325 aa		27.64	■■■□□ 2.02
PCM1-209	ENST00000518930	ZNF76	P36508	570 aa		27.64	■■■□□ 2.02
PCM1-209	ENST00000518930	MCTP1	Q6DN14	999 aa		27.64	■■■□□ 2.02
PCM1-209	ENST00000518930	PIK3AP1	Q6ZUJ8	805 aa		27.64	■■■□□ 2.02
PCM1-209	ENST00000518930	TBCK	Q8TEA7	893 aa		27.64	■■■□□ 2.02
PCM1-209	ENST00000518930	UNC93B1	Q9H1C4	597 aa		27.64	■■■□□ 2.02
PCM1-209	ENST00000518930	FOXP1	Q9H334	677 aa	Predicted RBP	27.64	■■■□□ 2.02
PCM1-209	ENST00000518930	FAM184B	Q9ULE4	1060 aa		27.64	■■■□□ 2.02
PCM1-209	ENST00000518930	VPS37C	A5D8V6	355 aa	Predicted RBP	27.63	■■■□□ 2.01
PCM1-209	ENST00000518930	SEPT4	O43236	478 aa		27.63	■■■□□ 2.01
PCM1-209	ENST00000518930	MRPS9	P82933	396 aa	Known RBP	27.63	■■■□□ 2.01
PCM1-209	ENST00000518930	MTFR1	Q15390	333 aa		27.63	■■■□□ 2.01
PCM1-209	ENST00000518930	SEPT14	Q6ZU15	432 aa		27.63	■■■□□ 2.01
PCM1-209	ENST00000518930	NLRX1	Q86UT6	975 aa		27.63	■■■□□ 2.01
PCM1-209	ENST00000518930	TNFRSF25	Q93038	417 aa		27.63	■■■□□ 2.01
PCM1-209	ENST00000518930	RNF208	Q9H0X6	261 aa		27.63	■■■□□ 2.01
PCM1-209	ENST00000518930	CCDC144B	Q3MJ40	725 aa		27.62	■■■□□ 2.01
PCM1-209	ENST00000518930	SCFD2	Q8WU76	684 aa		27.62	■■■□□ 2.01
PCM1-209	ENST00000518930	ZFP91	Q96JP5	570 aa	Predicted RBP	27.62	■■■□□ 2.01
PCM1-209	ENST00000518930	RTEL1	Q9NZ71	1219 aa		27.62	■■■□□ 2.01
PCM1-209	ENST00000518930	CENPF	P49454	3210 aa		27.61	■■■□□ 2.01
PCM1-209	ENST00000518930	MSC	O60682	206 aa		27.61	■■■□□ 2.01
PCM1-209	ENST00000518930	CYP3A4	P08684	503 aa		27.61	■■■□□ 2.01
PCM1-209	ENST00000518930	TTLL4	Q14679	1199 aa		27.61	■■■□□ 2.01
PCM1-209	ENST00000518930	INF2	Q27J81	1249 aa		27.61	■■■□□ 2.01
PCM1-209	ENST00000518930	TAPT1	Q6NXT6	567 aa		27.61	■■■□□ 2.01
PCM1-209	ENST00000518930	TNS4	Q8IZW8	715 aa		27.61	■■■□□ 2.01
PCM1-209	ENST00000518930	INPP4A	Q96PE3	977 aa	Predicted RBP	27.61	■■■□□ 2.01
PCM1-209	ENST00000518930	PDGFC	Q9NRA1	345 aa		27.61	■■■□□ 2.01
PCM1-209	ENST00000518930	DAXX	Q9UER7	740 aa	Predicted RBP	27.61	■■■□□ 2.01
PCM1-209	ENST00000518930	MRVI1	Q9Y6F6	885 aa		27.61	■■■□□ 2.01
PCM1-209	ENST00000518930	FRMPD3	Q5JV73	1810 aa		27.6	■■■□□ 2.01
PCM1-209	ENST00000518930	SYT1	P21579	422 aa		27.6	■■■□□ 2.01
PCM1-209	ENST00000518930	ADCYAP1R1	P41586	468 aa		27.6	■■■□□ 2.01
PCM1-209	ENST00000518930	USP11	P51784	963 aa		27.6	■■■□□ 2.01
PCM1-209	ENST00000518930	IQSEC1	Q6DN90	963 aa		27.6	■■■□□ 2.01
PCM1-209	ENST00000518930	NOSTRIN	Q8IVI9	506 aa		27.6	■■■□□ 2.01
PCM1-209	ENST00000518930	CRYGN	Q8WXF5	182 aa		27.6	■■■□□ 2.01
PCM1-209	ENST00000518930	DDX20	Q9UHI6	824 aa	Known RBP	27.6	■■■□□ 2.01
PCM1-209	ENST00000518930	RBM47	A0AV96	593 aa	Known RBP	27.59	■■■□□ 2.01
PCM1-209	ENST00000518930	FIBP	O43427	364 aa		27.59	■■■□□ 2.01
PCM1-209	ENST00000518930	TNFAIP2	Q03169	654 aa		27.59	■■■□□ 2.01
PCM1-209	ENST00000518930	CEP55	Q53EZ4	464 aa		27.59	■■■□□ 2.01
PCM1-209	ENST00000518930	KCNV1	Q6PIU1	500 aa		27.59	■■■□□ 2.01
PCM1-209	ENST00000518930	NEK8	Q86SG6	692 aa		27.59	■■■□□ 2.01
PCM1-209	ENST00000518930	GPRASP2	Q96D09	838 aa		27.59	■■■□□ 2.01
PCM1-209	ENST00000518930	CDHR1	Q96JP9	859 aa		27.59	■■■□□ 2.01
PCM1-209	ENST00000518930	MXRA8	Q9BRK3	442 aa		27.59	■■■□□ 2.01
PCM1-209	ENST00000518930	WDR11	Q9BZH6	1224 aa		27.59	■■■□□ 2.01
PCM1-209	ENST00000518930	PAK6	Q9NQU5	681 aa	Predicted RBP	27.59	■■■□□ 2.01
PCM1-209	ENST00000518930	TSHZ2	Q9NRE2	1034 aa		27.59	■■■□□ 2.01
PCM1-209	ENST00000518930	UBIAD1	Q9Y5Z9	338 aa		27.59	■■■□□ 2.01
PCM1-209	ENST00000518930	RGS20	O76081	388 aa		27.58	■■■□□ 2.01
PCM1-209	ENST00000518930	RARB	P10826	455 aa		27.58	■■■□□ 2.01
PCM1-209	ENST00000518930	U2AF2	P26368	475 aa	Known RBP eCLIP	27.58	■■■□□ 2.01	7e-8	■■■■□ 21.3
PCM1-209	ENST00000518930	MTMR1	Q13613	665 aa		27.58	■■■□□ 2.01
PCM1-209	ENST00000518930	NAP1L4	Q99733	375 aa	Known RBP	27.58	■■■□□ 2.01
PCM1-209	ENST00000518930	TMEM106C	Q9BVX2	250 aa		27.58	■■■□□ 2.01
PCM1-209	ENST00000518930	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	27.57	■■■□□ 2
PCM1-209	ENST00000518930	FAM205C	A6NFA0	338 aa		27.57	■■■□□ 2
PCM1-209	ENST00000518930	KIF28P	B7ZC32	967 aa		27.57	■■■□□ 2
PCM1-209	ENST00000518930	STX6	O43752	255 aa		27.57	■■■□□ 2
PCM1-209	ENST00000518930	TXN	P10599	105 aa	Known RBP	27.57	■■■□□ 2
PCM1-209	ENST00000518930	PDIA4	P13667	645 aa	Known RBP	27.57	■■■□□ 2
PCM1-209	ENST00000518930	ITGB5	P18084	799 aa		27.57	■■■□□ 2
PCM1-209	ENST00000518930	SET	Q01105	290 aa	Predicted RBP	27.57	■■■□□ 2
PCM1-209	ENST00000518930	LETM2	Q2VYF4	491 aa		27.57	■■■□□ 2
PCM1-209	ENST00000518930	EARS2	Q5JPH6	523 aa	Known RBP	27.57	■■■□□ 2
PCM1-209	ENST00000518930	NIPA1	Q7RTP0	329 aa		27.57	■■■□□ 2
PCM1-209	ENST00000518930	JADE2	Q9NQC1	790 aa		27.57	■■■□□ 2
PCM1-209	ENST00000518930	NKRF	O15226	690 aa	Known RBP eCLIP	27.56	■■■□□ 2
PCM1-209	ENST00000518930	ICAM3	P32942	547 aa		27.56	■■■□□ 2
PCM1-209	ENST00000518930	CIITA	P33076	1130 aa		27.56	■■■□□ 2
PCM1-209	ENST00000518930	ANO1	Q5XXA6	986 aa		27.56	■■■□□ 2
PCM1-209	ENST00000518930	MOXD1	Q6UVY6	613 aa		27.56	■■■□□ 2
PCM1-209	ENST00000518930	ABHD8	Q96I13	439 aa		27.56	■■■□□ 2
PCM1-209	ENST00000518930	DEFB118	Q96PH6	123 aa		27.56	■■■□□ 2
PCM1-209	ENST00000518930	NOL7	Q9UMY1	257 aa	Known RBP	27.56	■■■□□ 2
PCM1-209	ENST00000518930	FAM86B1	E9PN63	330 aa		27.55	■■■□□ 2
PCM1-209	ENST00000518930	FAM86B2	P0C5J1	330 aa		27.55	■■■□□ 2
PCM1-209	ENST00000518930	TGFB3	P10600	412 aa		27.55	■■■□□ 2
PCM1-209	ENST00000518930	GCFC2	P16383	781 aa	Known RBP	27.55	■■■□□ 2
PCM1-209	ENST00000518930	SMPD1	P17405	629 aa		27.55	■■■□□ 2
PCM1-209	ENST00000518930	DUSP28	Q4G0W2	176 aa		27.55	■■■□□ 2
PCM1-209	ENST00000518930	PRR16	Q569H4	304 aa		27.55	■■■□□ 2
PCM1-209	ENST00000518930	PLA2G4D	Q86XP0	818 aa		27.55	■■■□□ 2

Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms