RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 PPLO60437 1756 aa7.17□□□□□ -1.26
NUP54-218ENST00000515460 COL14A1Q05707 1796 aaKnown RBP7.17□□□□□ -1.26
NUP54-218ENST00000515460 TRIOBPQ9H2D6 2365 aa7.17□□□□□ -1.26
NUP54-218ENST00000515460 ADAMTS7Q9UKP4 1686 aa7.16□□□□□ -1.26
NUP54-218ENST00000515460 ATE1O95260 518 aa7.16□□□□□ -1.26
NUP54-218ENST00000515460 RAG1P15918 1043 aa7.16□□□□□ -1.26
NUP54-218ENST00000515460 APOBRQ0VD83 1088 aa7.16□□□□□ -1.26
NUP54-218ENST00000515460 DUSP4Q13115 394 aa7.16□□□□□ -1.26
NUP54-218ENST00000515460 NR0B2Q15466 257 aa7.16□□□□□ -1.26
NUP54-218ENST00000515460 CHRNA2Q15822 529 aa7.16□□□□□ -1.26
NUP54-218ENST00000515460 IRF2BP1Q8IU81 584 aa7.16□□□□□ -1.26
NUP54-218ENST00000515460 BRMS1Q9HCU9 246 aa7.16□□□□□ -1.26
NUP54-218ENST00000515460 GMIPQ9P107 970 aa7.16□□□□□ -1.26
NUP54-218ENST00000515460 ARHGEF10O15013 1369 aa7.16□□□□□ -1.26
NUP54-218ENST00000515460 PXDNLA1KZ92 1463 aa7.16□□□□□ -1.26
NUP54-218ENST00000515460 VIRMAQ69YN4 1812 aaKnown RBP7.15□□□□□ -1.26
NUP54-218ENST00000515460 CASP8AP2Q9UKL3 1982 aa7.15□□□□□ -1.26
NUP54-218ENST00000515460 MYOCOSA0A1B0GUC4 107 aa7.15□□□□□ -1.26
NUP54-218ENST00000515460 ZNF76P36508 570 aa7.15□□□□□ -1.26
NUP54-218ENST00000515460 RNF4P78317 190 aa7.15□□□□□ -1.26
NUP54-218ENST00000515460 DLG4P78352 724 aa7.15□□□□□ -1.26
NUP54-218ENST00000515460 CHRNEQ04844 493 aa7.15□□□□□ -1.26
NUP54-218ENST00000515460 NMIQ13287 307 aaPredicted RBP7.15□□□□□ -1.26
NUP54-218ENST00000515460 ARSHQ5FYA8 562 aa7.15□□□□□ -1.26
NUP54-218ENST00000515460 C9orf131Q5VYM1 1079 aa7.15□□□□□ -1.26
NUP54-218ENST00000515460 SGPP1Q9BX95 441 aa7.15□□□□□ -1.26
NUP54-218ENST00000515460 ZMYM5Q9UJ78 669 aa7.15□□□□□ -1.26
NUP54-218ENST00000515460 CD2APQ9Y5K6 639 aa7.15□□□□□ -1.26
NUP54-218ENST00000515460 OVOS2A0A0G2JMS6 1433 aa7.15□□□□□ -1.27
NUP54-218ENST00000515460 OVOS2A0A0J9YW53 1432 aa7.15□□□□□ -1.27
NUP54-218ENST00000515460 OVOS2Q6IE36 1432 aa7.15□□□□□ -1.27
NUP54-218ENST00000515460 PAPPAQ13219 1627 aa7.15□□□□□ -1.27
NUP54-218ENST00000515460 MKI67P46013 3256 aaKnown RBP7.15□□□□□ -1.27
NUP54-218ENST00000515460 SLC22A31A6NKX4 558 aa7.14□□□□□ -1.27
NUP54-218ENST00000515460 RGS13O14921 159 aa7.14□□□□□ -1.27
NUP54-218ENST00000515460 INHBBP09529 407 aa7.14□□□□□ -1.27
NUP54-218ENST00000515460 ZNF165P49910 485 aa7.14□□□□□ -1.27
NUP54-218ENST00000515460 SEZ6Q53EL9 994 aa7.14□□□□□ -1.27
NUP54-218ENST00000515460 TTLL10Q6ZVT0 673 aa7.14□□□□□ -1.27
NUP54-218ENST00000515460 C10orf71Q711Q0 1435 aa7.14□□□□□ -1.27
NUP54-218ENST00000515460 ANKARQ7Z5J8 1434 aa7.14□□□□□ -1.27
NUP54-218ENST00000515460 REXO1Q8N1G1 1221 aaKnown RBP7.14□□□□□ -1.27
NUP54-218ENST00000515460 ANKS4BQ8N8V4 417 aa7.14□□□□□ -1.27
NUP54-218ENST00000515460 KDM2BQ8NHM5 1336 aa7.14□□□□□ -1.27
NUP54-218ENST00000515460 VWCEQ96DN2 955 aa7.14□□□□□ -1.27
NUP54-218ENST00000515460 EHMT1Q9H9B1 1298 aa7.14□□□□□ -1.27
NUP54-218ENST00000515460 METTL5Q9NRN9 209 aaKnown RBP7.14□□□□□ -1.27
NUP54-218ENST00000515460 ADAMTS1Q9UHI8 967 aa7.14□□□□□ -1.27
NUP54-218ENST00000515460 FMN2Q9NZ56 1722 aa7.13□□□□□ -1.27
NUP54-218ENST00000515460 SSU72P8A0A1W2PR75 194 aa7.13□□□□□ -1.27
NUP54-218ENST00000515460 UBOX5O94941 541 aa7.13□□□□□ -1.27
NUP54-218ENST00000515460 CDK11BP21127 795 aaKnown RBP7.13□□□□□ -1.27
NUP54-218ENST00000515460 MCM4P33991 863 aa7.13□□□□□ -1.27
NUP54-218ENST00000515460 RAD51AP2Q09MP3 1159 aa7.13□□□□□ -1.27
NUP54-218ENST00000515460 SNX17Q15036 470 aa7.13□□□□□ -1.27
NUP54-218ENST00000515460 LRRFIP1Q32MZ4 808 aaKnown RBP7.13□□□□□ -1.27
NUP54-218ENST00000515460 KIAA0825Q8IV33 1275 aa7.13□□□□□ -1.27
NUP54-218ENST00000515460 USHBP1Q8N6Y0 703 aa7.13□□□□□ -1.27
NUP54-218ENST00000515460 NGDNQ8NEJ9 315 aaKnown RBP7.13□□□□□ -1.27
NUP54-218ENST00000515460 LINC01599Q8WXQ3 324 aa7.13□□□□□ -1.27
NUP54-218ENST00000515460 NKD1Q969G9 470 aa7.13□□□□□ -1.27
NUP54-218ENST00000515460 SHISA4Q96DD7 197 aa7.13□□□□□ -1.27
NUP54-218ENST00000515460 SPON2Q9BUD6 331 aa7.13□□□□□ -1.27
NUP54-218ENST00000515460 NT5C1AQ9BXI3 368 aa7.13□□□□□ -1.27
NUP54-218ENST00000515460 FOXP3Q9BZS1 431 aa7.13□□□□□ -1.27
NUP54-218ENST00000515460 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.13□□□□□ -1.277e-10■■■■■ 34.7
NUP54-218ENST00000515460 ZNF552Q9H707 407 aaPredicted RBP7.13□□□□□ -1.27
NUP54-218ENST00000515460 PRDM11Q9NQV5 511 aa7.13□□□□□ -1.27
NUP54-218ENST00000515460 UBP1Q9NZI7 540 aa7.13□□□□□ -1.27
NUP54-218ENST00000515460 SPTBN5Q9NRC6 3674 aaKnown RBP7.13□□□□□ -1.27
NUP54-218ENST00000515460 GPRASP1Q5JY77 1395 aa7.12□□□□□ -1.27
NUP54-218ENST00000515460 RAB3GAP2Q9H2M9 1393 aa7.12□□□□□ -1.27
NUP54-218ENST00000515460 PEX10O60683 326 aa7.12□□□□□ -1.27
NUP54-218ENST00000515460 USP2O75604 605 aaPredicted RBP7.12□□□□□ -1.27
NUP54-218ENST00000515460 HMGB1P09429 215 aaKnown RBP7.12□□□□□ -1.27
NUP54-218ENST00000515460 CRKP46108 304 aa7.12□□□□□ -1.27
NUP54-218ENST00000515460 SLC14A2Q15849 920 aa7.12□□□□□ -1.27
NUP54-218ENST00000515460 ADGRF1Q5T601 910 aa7.12□□□□□ -1.27
NUP54-218ENST00000515460 GK5Q6ZS86 529 aa7.12□□□□□ -1.27
NUP54-218ENST00000515460 TMC3Q7Z5M5 1100 aa7.12□□□□□ -1.27
NUP54-218ENST00000515460 ENOX1Q8TC92 643 aaKnown RBP7.12□□□□□ -1.27
NUP54-218ENST00000515460 G6PC3Q9BUM1 346 aa7.12□□□□□ -1.27
NUP54-218ENST00000515460 CDK19Q9BWU1 502 aa7.12□□□□□ -1.27
NUP54-218ENST00000515460 CNOT6Q9ULM6 557 aaKnown RBP7.12□□□□□ -1.27
NUP54-218ENST00000515460 ADGRB1O14514 1584 aa7.12□□□□□ -1.27
NUP54-218ENST00000515460 KNDC1Q76NI1 1749 aa7.11□□□□□ -1.27
NUP54-218ENST00000515460 IFT172Q9UG01 1749 aa7.11□□□□□ -1.27
NUP54-218ENST00000515460 NOTOA8MTQ0 251 aa7.11□□□□□ -1.27
NUP54-218ENST00000515460 FKTNO75072 461 aa7.11□□□□□ -1.27
NUP54-218ENST00000515460 POLR2BP30876 1174 aaKnown RBP7.11□□□□□ -1.27
NUP54-218ENST00000515460 CCNFP41002 786 aa7.11□□□□□ -1.27
NUP54-218ENST00000515460 ZC3H6P61129 1189 aaKnown RBP7.11□□□□□ -1.27
NUP54-218ENST00000515460 CDCP2Q5VXM1 449 aa7.11□□□□□ -1.27
NUP54-218ENST00000515460 OVOS1Q6IE37 1185 aa7.11□□□□□ -1.27
NUP54-218ENST00000515460 RNF111Q6ZNA4 994 aa7.11□□□□□ -1.27
NUP54-218ENST00000515460 USP48Q86UV5 1035 aa7.11□□□□□ -1.27
NUP54-218ENST00000515460 TCP11L2Q8N4U5 519 aa7.11□□□□□ -1.27
NUP54-218ENST00000515460 SYTL5Q8TDW5 730 aaPredicted RBP7.11□□□□□ -1.27
NUP54-218ENST00000515460 TCTN2Q96GX1 697 aa7.11□□□□□ -1.27
NUP54-218ENST00000515460 HDAC8Q9BY41 377 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms