RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 C21orf2O43822 256 aa14.38□□□□□ -0.11
TCOF1-213ENST00000514442 ERCC5P28715 1186 aaPredicted RBP14.38□□□□□ -0.11
TCOF1-213ENST00000514442 CDK8P49336 464 aa14.38□□□□□ -0.11
TCOF1-213ENST00000514442 KIFAP3Q92845 792 aa14.38□□□□□ -0.11
TCOF1-213ENST00000514442 IFIH1Q9BYX4 1025 aaKnown RBP14.38□□□□□ -0.11
TCOF1-213ENST00000514442 SUDS3Q9H7L9 328 aaPredicted RBP14.38□□□□□ -0.11
TCOF1-213ENST00000514442 IQSEC2Q5JU85 1478 aa14.38□□□□□ -0.11
TCOF1-213ENST00000514442 N4BP1O75113 896 aaKnown RBP14.38□□□□□ -0.11
TCOF1-213ENST00000514442 LONP1P36776 959 aaKnown RBP14.38□□□□□ -0.11
TCOF1-213ENST00000514442 SNAP25P60880 206 aa14.38□□□□□ -0.11
TCOF1-213ENST00000514442 CYB5R4Q7L1T6 521 aa14.38□□□□□ -0.11
TCOF1-213ENST00000514442 FMR1NBQ8N0W7 255 aaPredicted RBP14.38□□□□□ -0.11
TCOF1-213ENST00000514442 ENOX1Q8TC92 643 aaKnown RBP14.38□□□□□ -0.11
TCOF1-213ENST00000514442 TBCKQ8TEA7 893 aa14.38□□□□□ -0.11
TCOF1-213ENST00000514442 SPDL1Q96EA4 605 aa14.38□□□□□ -0.11
TCOF1-213ENST00000514442 PCDHB6Q9Y5E3 794 aa14.38□□□□□ -0.11
TCOF1-213ENST00000514442 PPP6R2O75170 966 aa14.37□□□□□ -0.11
TCOF1-213ENST00000514442 GPATCH4Q5T3I0 446 aaKnown RBP14.37□□□□□ -0.11
TCOF1-213ENST00000514442 COG1Q8WTW3 980 aa14.37□□□□□ -0.11
TCOF1-213ENST00000514442 GBP5Q96PP8 586 aa14.37□□□□□ -0.11
TCOF1-213ENST00000514442 KIAA1024Q9UPX6 916 aa14.37□□□□□ -0.11
TCOF1-213ENST00000514442 PTPRUQ92729 1446 aa14.37□□□□□ -0.11
TCOF1-213ENST00000514442 AK9Q5TCS8 1911 aa14.37□□□□□ -0.11
TCOF1-213ENST00000514442 CCDC160A6NGH7 325 aa14.37□□□□□ -0.11
TCOF1-213ENST00000514442 H3BQF6 201 aa14.37□□□□□ -0.11
TCOF1-213ENST00000514442 SF3A3Q12874 501 aaKnown RBP eCLIP14.37□□□□□ -0.11
TCOF1-213ENST00000514442 HIBCHQ6NVY1 386 aaPredicted RBP14.37□□□□□ -0.11
TCOF1-213ENST00000514442 SLFN12Q8IYM2 578 aa14.37□□□□□ -0.11
TCOF1-213ENST00000514442 UTP11Q9Y3A2 253 aaKnown RBP14.37□□□□□ -0.11
TCOF1-213ENST00000514442 CACNB1Q02641 598 aaPredicted RBP14.37□□□□□ -0.11
TCOF1-213ENST00000514442 XKR9Q5GH70 373 aa14.37□□□□□ -0.11
TCOF1-213ENST00000514442 SEL1L2Q5TEA6 688 aa14.37□□□□□ -0.11
TCOF1-213ENST00000514442 SFMBT2Q5VUG0 894 aa14.37□□□□□ -0.11
TCOF1-213ENST00000514442 NMT2O60551 498 aa14.37□□□□□ -0.11
TCOF1-213ENST00000514442 USP14P54578 494 aa14.37□□□□□ -0.11
TCOF1-213ENST00000514442 UBE2SQ16763 222 aa14.37□□□□□ -0.11
TCOF1-213ENST00000514442 ANKRD35Q8N283 1001 aa14.37□□□□□ -0.11
TCOF1-213ENST00000514442 TPX2Q9ULW0 747 aaKnown RBP14.37□□□□□ -0.11
TCOF1-213ENST00000514442 EIF3HO15372 352 aaKnown RBP eCLIP14.36□□□□□ -0.11
TCOF1-213ENST00000514442 CHGBP05060 677 aa14.36□□□□□ -0.11
TCOF1-213ENST00000514442 KRT19P08727 400 aa14.36□□□□□ -0.11
TCOF1-213ENST00000514442 EMBQ6PCB8 327 aa14.36□□□□□ -0.11
TCOF1-213ENST00000514442 NCAPG2Q86XI2 1143 aa14.36□□□□□ -0.11
TCOF1-213ENST00000514442 PSMD1Q99460 953 aa14.36□□□□□ -0.11
TCOF1-213ENST00000514442 TSC22D3Q99576 134 aa14.36□□□□□ -0.11
TCOF1-213ENST00000514442 NOP53Q9NZM5 478 aaKnown RBP14.36□□□□□ -0.11
TCOF1-213ENST00000514442 NOD1Q9Y239 953 aa14.36□□□□□ -0.11
TCOF1-213ENST00000514442 OVOS2A0A0G2JMS6 1433 aa14.36□□□□□ -0.11
TCOF1-213ENST00000514442 LIFRP42702 1097 aa14.36□□□□□ -0.11
TCOF1-213ENST00000514442 LRRC23Q53EV4 343 aaPredicted RBP14.36□□□□□ -0.11
TCOF1-213ENST00000514442 TAOK1Q7L7X3 1001 aa14.36□□□□□ -0.11
TCOF1-213ENST00000514442 SULF1Q8IWU6 871 aa14.36□□□□□ -0.11
TCOF1-213ENST00000514442 RNF168Q8IYW5 571 aaPredicted RBP14.36□□□□□ -0.11
TCOF1-213ENST00000514442 MSANTD4Q8NCY6 345 aa14.36□□□□□ -0.11
TCOF1-213ENST00000514442 STMN2Q93045 179 aa14.36□□□□□ -0.11
TCOF1-213ENST00000514442 CPVLQ9H3G5 476 aa14.36□□□□□ -0.11
TCOF1-213ENST00000514442 ZRANB2O95218 330 aaKnown RBP eCLIP14.36□□□□□ -0.11
TCOF1-213ENST00000514442 ATP5DP30049 168 aa14.36□□□□□ -0.11
TCOF1-213ENST00000514442 DRP2Q13474 957 aa14.36□□□□□ -0.11
TCOF1-213ENST00000514442 MUM1Q2TAK8 710 aa14.36□□□□□ -0.11
TCOF1-213ENST00000514442 TBC1D10BQ4KMP7 808 aaPredicted RBP14.36□□□□□ -0.11
TCOF1-213ENST00000514442 SLC44A5Q8NCS7 719 aa14.36□□□□□ -0.11
TCOF1-213ENST00000514442 KANSL2Q9H9L4 492 aa14.36□□□□□ -0.11
TCOF1-213ENST00000514442 MLXIPQ9HAP2 919 aa14.36□□□□□ -0.11
TCOF1-213ENST00000514442 CTTNBP2NLQ9P2B4 639 aa14.36□□□□□ -0.11
TCOF1-213ENST00000514442 K7ENM7 598 aa14.36□□□□□ -0.11
TCOF1-213ENST00000514442 ALDH3A1P30838 453 aa14.36□□□□□ -0.11
TCOF1-213ENST00000514442 ATG9AQ7Z3C6 839 aa14.36□□□□□ -0.11
TCOF1-213ENST00000514442 DCPSQ96C86 337 aaKnown RBP14.36□□□□□ -0.11
TCOF1-213ENST00000514442 MASTLQ96GX5 879 aa14.36□□□□□ -0.11
TCOF1-213ENST00000514442 TEKT3Q9BXF9 490 aa14.36□□□□□ -0.11
TCOF1-213ENST00000514442 NUCKS1Q9H1E3 243 aaKnown RBP14.36□□□□□ -0.11
TCOF1-213ENST00000514442 SH3BGRP55822 239 aaPredicted RBP14.35□□□□□ -0.11
TCOF1-213ENST00000514442 GNPTABQ3T906 1256 aa14.35□□□□□ -0.11
TCOF1-213ENST00000514442 CCDC93Q567U6 631 aa14.35□□□□□ -0.11
TCOF1-213ENST00000514442 CCDC84Q86UT8 332 aaPredicted RBP14.35□□□□□ -0.11
TCOF1-213ENST00000514442 COA1Q9GZY4 146 aa14.35□□□□□ -0.11
TCOF1-213ENST00000514442 COMMD10Q9Y6G5 202 aa14.35□□□□□ -0.11
TCOF1-213ENST00000514442 FAM196BA6NMK8 535 aa14.35□□□□□ -0.11
TCOF1-213ENST00000514442 HMGB1P1B2RPK0 211 aaPredicted RBP14.35□□□□□ -0.11
TCOF1-213ENST00000514442 PABPC4Q13310 644 aaKnown RBP eCLIP14.35□□□□□ -0.11
TCOF1-213ENST00000514442 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.35□□□□□ -0.11
TCOF1-213ENST00000514442 MAN1B1Q9UKM7 699 aa14.35□□□□□ -0.11
TCOF1-213ENST00000514442 PRPF3O43395 683 aaKnown RBP14.35□□□□□ -0.11
TCOF1-213ENST00000514442 TNNI1P19237 187 aa14.35□□□□□ -0.11
TCOF1-213ENST00000514442 GUCY2DQ02846 1103 aa14.35□□□□□ -0.11
TCOF1-213ENST00000514442 SPATA24Q86W54 205 aa14.35□□□□□ -0.11
TCOF1-213ENST00000514442 VSIG1Q86XK7 387 aa14.35□□□□□ -0.11
TCOF1-213ENST00000514442 METTL13Q8N6R0 699 aa14.35□□□□□ -0.11
TCOF1-213ENST00000514442 CCDC77Q9BR77 488 aa14.35□□□□□ -0.11
TCOF1-213ENST00000514442 MFAP3LO75121 409 aa14.35□□□□□ -0.11
TCOF1-213ENST00000514442 XRCC5P13010 732 aaKnown RBP14.35□□□□□ -0.11
TCOF1-213ENST00000514442 FAM26FQ5R3K3 315 aa14.35□□□□□ -0.11
TCOF1-213ENST00000514442 CAPRIN2Q6IMN6 1127 aaKnown RBP14.35□□□□□ -0.11
TCOF1-213ENST00000514442 STAG1Q8WVM7 1258 aa14.35□□□□□ -0.11
TCOF1-213ENST00000514442 YIPF3Q9GZM5 350 aa14.35□□□□□ -0.11
TCOF1-213ENST00000514442 IRAK4Q9NWZ3 460 aa14.35□□□□□ -0.11
TCOF1-213ENST00000514442 ADGRG1Q9Y653 693 aa14.35□□□□□ -0.11
TCOF1-213ENST00000514442 DPY19L2Q6NUT2 758 aa14.34□□□□□ -0.11
TCOF1-213ENST00000514442 ZNF365Q70YC5 407 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms