RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 ARMCX2Q7L311 632 aa23.15■■□□□ 1.3
USP53-208ENST00000514305 HEATR3Q7Z4Q2 680 aa23.15■■□□□ 1.3
USP53-208ENST00000514305 FAM184AQ8NB25 1140 aa23.15■■□□□ 1.3
USP53-208ENST00000514305 RGS22Q8NE09 1264 aa23.15■■□□□ 1.3
USP53-208ENST00000514305 CCDC148Q8NFR7 591 aa23.15■■□□□ 1.3
USP53-208ENST00000514305 STARD7Q9NQZ5 370 aa23.15■■□□□ 1.3
USP53-208ENST00000514305 ORC3Q9UBD5 711 aaPredicted RBP23.15■■□□□ 1.3
USP53-208ENST00000514305 MOXD2PA6NHM9 499 aa23.14■■□□□ 1.29
USP53-208ENST00000514305 HSP90AA1P07900 732 aaKnown RBP23.14■■□□□ 1.29
USP53-208ENST00000514305 CLTBP09497 229 aa23.14■■□□□ 1.29
USP53-208ENST00000514305 ACLYP53396 1101 aa23.14■■□□□ 1.29
USP53-208ENST00000514305 BADQ92934 168 aa23.14■■□□□ 1.29
USP53-208ENST00000514305 CUL5Q93034 780 aa23.14■■□□□ 1.29
USP53-208ENST00000514305 SH3GLB2Q9NR46 395 aa23.14■■□□□ 1.29
USP53-208ENST00000514305 PTPDC1A2A3K4 754 aa23.13■■□□□ 1.29
USP53-208ENST00000514305 PQBP1O60828 265 aaKnown RBP23.13■■□□□ 1.29
USP53-208ENST00000514305 CD2BP2O95400 341 aaKnown RBP23.13■■□□□ 1.29
USP53-208ENST00000514305 NAPAP54920 295 aa23.13■■□□□ 1.29
USP53-208ENST00000514305 CNTN2Q02246 1040 aa23.13■■□□□ 1.29
USP53-208ENST00000514305 TRIM29Q14134 588 aa23.13■■□□□ 1.29
USP53-208ENST00000514305 SLC35G1Q2M3R5 365 aa23.13■■□□□ 1.29
USP53-208ENST00000514305 CCDC144BQ3MJ40 725 aa23.13■■□□□ 1.29
USP53-208ENST00000514305 NSUN7Q8NE18 718 aaKnown RBP23.13■■□□□ 1.29
USP53-208ENST00000514305 FGD4Q96M96 766 aa23.13■■□□□ 1.29
USP53-208ENST00000514305 A1CFQ9NQ94 594 aaKnown RBP23.13■■□□□ 1.29
USP53-208ENST00000514305 BARHL2Q9NY43 387 aa23.13■■□□□ 1.29
USP53-208ENST00000514305 TRIM43BA6NCK2 446 aa23.12■■□□□ 1.29
USP53-208ENST00000514305 C6orf222P0C671 652 aaPredicted RBP23.12■■□□□ 1.29
USP53-208ENST00000514305 GNA11P29992 359 aa23.12■■□□□ 1.29
USP53-208ENST00000514305 MRPL12P52815 198 aaKnown RBP23.12■■□□□ 1.29
USP53-208ENST00000514305 KCNA10Q16322 511 aa23.12■■□□□ 1.29
USP53-208ENST00000514305 SH3RF1Q7Z6J0 888 aa23.12■■□□□ 1.29
USP53-208ENST00000514305 FAM133AQ8N9E0 248 aa23.12■■□□□ 1.29
USP53-208ENST00000514305 PCSK9Q8NBP7 692 aaKnown RBP23.12■■□□□ 1.29
USP53-208ENST00000514305 KLHDC9Q8NEP7 349 aa23.12■■□□□ 1.29
USP53-208ENST00000514305 BICD2Q8TD16 824 aa23.12■■□□□ 1.29
USP53-208ENST00000514305 TRIM43Q96BQ3 446 aaPredicted RBP23.12■■□□□ 1.29
USP53-208ENST00000514305 INTS4Q96HW7 963 aaKnown RBP23.12■■□□□ 1.29
USP53-208ENST00000514305 GLT1D1Q96MS3 346 aa23.12■■□□□ 1.29
USP53-208ENST00000514305 SMC3Q9UQE7 1217 aa23.12■■□□□ 1.29
USP53-208ENST00000514305 ASB14A6NK59 587 aa23.11■■□□□ 1.29
USP53-208ENST00000514305 CST5P28325 142 aaPredicted RBP23.11■■□□□ 1.29
USP53-208ENST00000514305 ANP32AP39687 249 aaKnown RBP23.11■■□□□ 1.29
USP53-208ENST00000514305 CUL4AQ13619 759 aa23.11■■□□□ 1.29
USP53-208ENST00000514305 MCTP2Q6DN12 878 aa23.11■■□□□ 1.29
USP53-208ENST00000514305 ASTLQ6HA08 431 aaPredicted RBP23.11■■□□□ 1.29
USP53-208ENST00000514305 SLC17A8Q8NDX2 589 aa23.11■■□□□ 1.29
USP53-208ENST00000514305 MPHOSPH6Q99547 160 aaKnown RBP23.11■■□□□ 1.29
USP53-208ENST00000514305 C6orf50Q9HD87 102 aa23.11■■□□□ 1.29
USP53-208ENST00000514305 MTMR10Q9NXD2 777 aa23.11■■□□□ 1.29
USP53-208ENST00000514305 hCG_1642624A0A1W2PR95 340 aa23.1■■□□□ 1.29
USP53-208ENST00000514305 DCDC2CA8MYV0 355 aa23.1■■□□□ 1.29
USP53-208ENST00000514305 B4DLN1 442 aa23.1■■□□□ 1.29
USP53-208ENST00000514305 ATMINO43313 823 aaPredicted RBP23.1■■□□□ 1.29
USP53-208ENST00000514305 RAG1P15918 1043 aa23.1■■□□□ 1.29
USP53-208ENST00000514305 GALNT17Q6IS24 598 aa23.1■■□□□ 1.29
USP53-208ENST00000514305 NSMFQ6X4W1 530 aa23.1■■□□□ 1.29
USP53-208ENST00000514305 RNF207Q6ZRF8 634 aa23.1■■□□□ 1.29
USP53-208ENST00000514305 SMARCC2Q8TAQ2 1214 aa23.1■■□□□ 1.29
USP53-208ENST00000514305 PSTPIP2Q9H939 334 aa23.1■■□□□ 1.29
USP53-208ENST00000514305 TMEM39AQ9NV64 488 aa23.1■■□□□ 1.29
USP53-208ENST00000514305 TRPC6Q9Y210 931 aa23.1■■□□□ 1.29
USP53-208ENST00000514305 MROH7Q68CQ1 1323 aa23.09■■□□□ 1.29
USP53-208ENST00000514305 COL6A3P12111 3177 aa23.09■■□□□ 1.29
USP53-208ENST00000514305 LRRC37A2A6NM11 1700 aa23.09■■□□□ 1.29
USP53-208ENST00000514305 GCOM1H8Y6P7 765 aaPredicted RBP23.09■■□□□ 1.29
USP53-208ENST00000514305 CTDNEP1O95476 244 aa23.09■■□□□ 1.29
USP53-208ENST00000514305 POLR2MP0CAP2 368 aa23.09■■□□□ 1.29
USP53-208ENST00000514305 CALML3P27482 149 aa23.09■■□□□ 1.29
USP53-208ENST00000514305 GJA9P57773 515 aa23.09■■□□□ 1.29
USP53-208ENST00000514305 SHHQ15465 462 aa23.09■■□□□ 1.29
USP53-208ENST00000514305 PKN1Q16512 942 aa23.09■■□□□ 1.29
USP53-208ENST00000514305 WWC2Q6AWC2 1192 aa23.09■■□□□ 1.29
USP53-208ENST00000514305 ANKRD33Q7Z3H0 272 aa23.09■■□□□ 1.29
USP53-208ENST00000514305 VTI1AQ96AJ9 217 aa23.09■■□□□ 1.29
USP53-208ENST00000514305 TOX2Q96NM4 488 aa23.09■■□□□ 1.29
USP53-208ENST00000514305 ALG1Q9BT22 464 aa23.09■■□□□ 1.29
USP53-208ENST00000514305 BRMS1Q9HCU9 246 aa23.09■■□□□ 1.29
USP53-208ENST00000514305 DAXXQ9UER7 740 aaPredicted RBP23.09■■□□□ 1.29
USP53-208ENST00000514305 ELP1O95163 1332 aa23.08■■□□□ 1.29
USP53-208ENST00000514305 ESYT2A0FGR8 921 aa23.08■■□□□ 1.29
USP53-208ENST00000514305 MYADML2A6NDP7 307 aa23.08■■□□□ 1.29
USP53-208ENST00000514305 KIAA0355O15063 1070 aa23.08■■□□□ 1.29
USP53-208ENST00000514305 PPP1R11O60927 126 aaPredicted RBP23.08■■□□□ 1.29
USP53-208ENST00000514305 CFBP00751 764 aa23.08■■□□□ 1.29
USP53-208ENST00000514305 ASGR1P07306 291 aa23.08■■□□□ 1.29
USP53-208ENST00000514305 NLRP5P59047 1200 aa23.08■■□□□ 1.29
USP53-208ENST00000514305 GNASQ5JWF2 1037 aa23.08■■□□□ 1.29
USP53-208ENST00000514305 CCSAPQ6IQ19 270 aaPredicted RBP23.08■■□□□ 1.29
USP53-208ENST00000514305 GPKOWQ92917 476 aaPredicted RBP eCLIP23.08■■□□□ 1.29
USP53-208ENST00000514305 FAM212AQ96EL1 285 aa23.08■■□□□ 1.29
USP53-208ENST00000514305 UPF3AQ9H1J1 476 aaKnown RBP23.08■■□□□ 1.29
USP53-208ENST00000514305 EHMT1Q9H9B1 1298 aa23.08■■□□□ 1.29
USP53-208ENST00000514305 ADD3Q9UEY8 706 aaKnown RBP23.08■■□□□ 1.29
USP53-208ENST00000514305 STXBP5LQ9Y2K9 1186 aa23.08■■□□□ 1.29
USP53-208ENST00000514305 SOWAHBA6NEL2 793 aa23.07■■□□□ 1.28
USP53-208ENST00000514305 SMCO2A6NFE2 343 aa23.07■■□□□ 1.28
USP53-208ENST00000514305 STXBP3O00186 592 aa23.07■■□□□ 1.28
USP53-208ENST00000514305 ADCY6O43306 1168 aa23.07■■□□□ 1.28
USP53-208ENST00000514305 PDIA4P13667 645 aaKnown RBP23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms