RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 SEPT12Q8IYM1 358 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 SNX29Q8TEQ0 813 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 PPP2R3CQ969Q6 453 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 NDEL1Q9GZM8 345 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 IFT122Q9HBG6 1241 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 MYOM1P52179 1685 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 NPHP4O75161 1426 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 A0A087WWV3 80 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 STXBP3O00186 592 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 IRS4O14654 1257 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 MAN1A1P33908 653 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 CARSP49589 748 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 GUCY2DQ02846 1103 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 THOC1Q96FV9 657 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 PPME1Q9Y570 386 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 SBNO1A3KN83 1393 aa9.47□□□□□ -0.89
LIMCH1-218ENST00000513024 H0Y3Z8 333 aa9.46□□□□□ -0.89
LIMCH1-218ENST00000513024 EPHB4P54760 987 aa9.46□□□□□ -0.89
LIMCH1-218ENST00000513024 CAPN12Q6ZSI9 719 aa9.46□□□□□ -0.89
LIMCH1-218ENST00000513024 MAEAQ7L5Y9 396 aa9.46□□□□□ -0.89
LIMCH1-218ENST00000513024 ZBTB33Q86T24 672 aa9.46□□□□□ -0.89
LIMCH1-218ENST00000513024 FCHSD1Q86WN1 690 aa9.46□□□□□ -0.89
LIMCH1-218ENST00000513024 SNRNP27Q8WVK2 155 aaKnown RBP9.46□□□□□ -0.89
LIMCH1-218ENST00000513024 APPBP2Q92624 585 aa9.46□□□□□ -0.89
LIMCH1-218ENST00000513024 RUNDC3BQ96NL0 473 aa9.46□□□□□ -0.89
LIMCH1-218ENST00000513024 HAUS4Q9H6D7 363 aa9.46□□□□□ -0.89
LIMCH1-218ENST00000513024 RTEL1Q9NZ71 1219 aa9.46□□□□□ -0.89
LIMCH1-218ENST00000513024 TPCN1Q9ULQ1 816 aa9.46□□□□□ -0.89
LIMCH1-218ENST00000513024 KCNJ18B7U540 433 aa9.46□□□□□ -0.89
LIMCH1-218ENST00000513024 IFNB1P01574 187 aa9.46□□□□□ -0.89
LIMCH1-218ENST00000513024 ASPHQ12797 758 aa9.46□□□□□ -0.89
LIMCH1-218ENST00000513024 KCNJ12Q14500 433 aa9.46□□□□□ -0.89
LIMCH1-218ENST00000513024 TRAF7Q6Q0C0 670 aa9.46□□□□□ -0.89
LIMCH1-218ENST00000513024 FAM186BQ8IYM0 893 aa9.46□□□□□ -0.89
LIMCH1-218ENST00000513024 KBTBD3Q8NAB2 608 aa9.46□□□□□ -0.89
LIMCH1-218ENST00000513024 CYTH2Q99418 400 aa9.46□□□□□ -0.89
LIMCH1-218ENST00000513024 TM6SF1Q9BZW5 370 aa9.46□□□□□ -0.89
LIMCH1-218ENST00000513024 GPCPD1Q9NPB8 672 aa9.46□□□□□ -0.89
LIMCH1-218ENST00000513024 VPS54Q9P1Q0 977 aa9.46□□□□□ -0.89
LIMCH1-218ENST00000513024 ATF5Q9Y2D1 282 aaPredicted RBP9.46□□□□□ -0.89
LIMCH1-218ENST00000513024 THRAP3Q9Y2W1 955 aaKnown RBP9.46□□□□□ -0.89
LIMCH1-218ENST00000513024 CEP152O94986 1710 aa9.46□□□□□ -0.9
LIMCH1-218ENST00000513024 KIAA1210Q9ULL0 1709 aa9.46□□□□□ -0.9
LIMCH1-218ENST00000513024 BACH1O14867 736 aa9.46□□□□□ -0.9
LIMCH1-218ENST00000513024 SNUPNO95149 360 aaKnown RBP9.46□□□□□ -0.9
LIMCH1-218ENST00000513024 IL1RL1Q01638 556 aa9.46□□□□□ -0.9
LIMCH1-218ENST00000513024 MRPL28Q13084 256 aaKnown RBP9.46□□□□□ -0.9
LIMCH1-218ENST00000513024 NAP1L4Q99733 375 aaKnown RBP9.46□□□□□ -0.9
LIMCH1-218ENST00000513024 AMFRQ9UKV5 643 aa9.46□□□□□ -0.9
LIMCH1-218ENST00000513024 DENND2AQ9ULE3 1009 aa9.46□□□□□ -0.9
LIMCH1-218ENST00000513024 MAD1L1Q9Y6D9 718 aa9.46□□□□□ -0.9
LIMCH1-218ENST00000513024 EYA2O00167 538 aa9.46□□□□□ -0.9
LIMCH1-218ENST00000513024 TSPAN9O75954 239 aa9.46□□□□□ -0.9
LIMCH1-218ENST00000513024 PTH1RQ03431 593 aa9.46□□□□□ -0.9
LIMCH1-218ENST00000513024 KMT5BQ4FZB7 885 aa9.46□□□□□ -0.9
LIMCH1-218ENST00000513024 OLFML2BQ68BL8 750 aa9.46□□□□□ -0.9
LIMCH1-218ENST00000513024 MCF2L2Q86YR7 1114 aa9.46□□□□□ -0.9
LIMCH1-218ENST00000513024 SLC35F6Q8N357 371 aa9.46□□□□□ -0.9
LIMCH1-218ENST00000513024 RFWD2Q8NHY2 731 aa9.46□□□□□ -0.9
LIMCH1-218ENST00000513024 EYA1Q99502 592 aa9.46□□□□□ -0.9
LIMCH1-218ENST00000513024 EPN1Q9Y6I3 576 aaPredicted RBP9.46□□□□□ -0.9
LIMCH1-218ENST00000513024 SUPT3HO75486 399 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 ATP5HO75947 161 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 ECM2O94769 699 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 ESRRAP11474 423 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 TPP2P29144 1249 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 NDUFA8P51970 172 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 PPP2R5CQ13362 524 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 TMEM259Q4ZIN3 620 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 CASC4Q6P4E1 433 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 ARHGEF18Q6ZSZ5 1173 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 U2AF1L4Q8WU68 220 aaKnown RBP9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 ZBTB10Q96DT7 871 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 FAM89AQ96GI7 184 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 GPR101Q96P66 508 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 CACYBPQ9HB71 228 aaKnown RBP9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 PCDHA7Q9UN72 937 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 SPATA31A6Q5VVP1 1343 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 SH3TC1Q8TE82 1336 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 EFCAB6Q5THR3 1501 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 NOP56O00567 594 aaKnown RBP9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 GNGT2O14610 69 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 CAPN9O14815 690 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 NR1D1P20393 614 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 DDIT3P35638 169 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 NNTQ13423 1086 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 CUL4BQ13620 913 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 CRYMQ14894 314 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 LIN9Q5TKA1 542 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 DCUN1D2Q6PH85 259 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 RTKN2Q8IZC4 609 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 ZNF594Q96JF6 807 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 PIM2Q9P1W9 311 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 CAPN11Q9UMQ6 739 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 FLT4P35916 1363 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 JCADQ9P266 1359 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 AOX1Q06278 1338 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 E7EWF7 191 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 GPC4O75487 556 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 CTDSPL2Q05D32 466 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms