RNA–Protein interactions for RNA: ENST00000512027.1

DDX41-213, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-213ENST00000512027 SCN10AQ9Y5Y9 1956 aa19.03■□□□□ 0.64
DDX41-213ENST00000512027 A0A1W2PPC1 479 aa19.03■□□□□ 0.64
DDX41-213ENST00000512027 NKRFO15226 690 aaKnown RBP eCLIP19.03■□□□□ 0.64
DDX41-213ENST00000512027 ZEB2O60315 1214 aa19.03■□□□□ 0.64
DDX41-213ENST00000512027 HMGB1P09429 215 aaKnown RBP19.03■□□□□ 0.64
DDX41-213ENST00000512027 CASTP20810 708 aaKnown RBP19.03■□□□□ 0.64
DDX41-213ENST00000512027 RPS6KB1P23443 525 aa19.03■□□□□ 0.64
DDX41-213ENST00000512027 CPT1AP50416 773 aa19.03■□□□□ 0.64
DDX41-213ENST00000512027 PURAQ00577 322 aaKnown RBP19.03■□□□□ 0.64
DDX41-213ENST00000512027 ARHGAP1Q07960 439 aa19.03■□□□□ 0.64
DDX41-213ENST00000512027 ITGA7Q13683 1181 aa19.03■□□□□ 0.64
DDX41-213ENST00000512027 FAM126BQ8IXS8 530 aa19.03■□□□□ 0.64
DDX41-213ENST00000512027 LRCH3Q96II8 777 aa19.03■□□□□ 0.64
DDX41-213ENST00000512027 TOX2Q96NM4 488 aa19.03■□□□□ 0.64
DDX41-213ENST00000512027 FAM217BQ9NTX9 383 aaPredicted RBP19.03■□□□□ 0.64
DDX41-213ENST00000512027 MAP3K20Q9NYL2 800 aaKnown RBP19.03■□□□□ 0.64
DDX41-213ENST00000512027 MEIS2O14770 477 aa19.02■□□□□ 0.64
DDX41-213ENST00000512027 KIAA0355O15063 1070 aa19.02■□□□□ 0.64
DDX41-213ENST00000512027 EIF3JO75822 258 aaKnown RBP19.02■□□□□ 0.64
DDX41-213ENST00000512027 RAG1P15918 1043 aa19.02■□□□□ 0.64
DDX41-213ENST00000512027 FUT2Q10981 343 aa19.02■□□□□ 0.64
DDX41-213ENST00000512027 UBE2SQ16763 222 aa19.02■□□□□ 0.64
DDX41-213ENST00000512027 HEATR3Q7Z4Q2 680 aa19.02■□□□□ 0.64
DDX41-213ENST00000512027 VSIG10LQ86VR7 867 aa19.02■□□□□ 0.64
DDX41-213ENST00000512027 SAMD3Q8N6K7 520 aa19.02■□□□□ 0.64
DDX41-213ENST00000512027 SLC43A3Q8NBI5 491 aa19.02■□□□□ 0.64
DDX41-213ENST00000512027 SMARCC2Q8TAQ2 1214 aa19.02■□□□□ 0.64
DDX41-213ENST00000512027 AFG1LQ8WV93 481 aa19.02■□□□□ 0.64
DDX41-213ENST00000512027 USP26Q9BXU7 913 aa19.02■□□□□ 0.64
DDX41-213ENST00000512027 DDX41Q9UJV9 622 aaKnown RBP19.02■□□□□ 0.64
DDX41-213ENST00000512027 TBX21Q9UL17 535 aa19.02■□□□□ 0.64
DDX41-213ENST00000512027 MRVI1Q9Y6F6 885 aa19.02■□□□□ 0.64
DDX41-213ENST00000512027 A6NJR5 290 aa19.01■□□□□ 0.63
DDX41-213ENST00000512027 CABYRO75952 493 aa19.01■□□□□ 0.63
DDX41-213ENST00000512027 GH1P01241 217 aa19.01■□□□□ 0.63
DDX41-213ENST00000512027 CCND2P30279 289 aa19.01■□□□□ 0.63
DDX41-213ENST00000512027 WWC2Q6AWC2 1192 aa19.01■□□□□ 0.63
DDX41-213ENST00000512027 TYW1BQ6NUM6 668 aa19.01■□□□□ 0.63
DDX41-213ENST00000512027 PPP1R12CQ9BZL4 782 aa19.01■□□□□ 0.63
DDX41-213ENST00000512027 TRPV6Q9H1D0 765 aa19.01■□□□□ 0.63
DDX41-213ENST00000512027 POLR3EQ9NVU0 708 aa19.01■□□□□ 0.63
DDX41-213ENST00000512027 RBM28Q9NW13 759 aaKnown RBP19.01■□□□□ 0.63
DDX41-213ENST00000512027 FRMPD4Q14CM0 1322 aa19■□□□□ 0.63
DDX41-213ENST00000512027 MROH7Q68CQ1 1323 aa19■□□□□ 0.63
DDX41-213ENST00000512027 CD4P01730 458 aa19■□□□□ 0.63
DDX41-213ENST00000512027 MMP3P08254 477 aa19■□□□□ 0.63
DDX41-213ENST00000512027 ADD1P35611 737 aaKnown RBP19■□□□□ 0.63
DDX41-213ENST00000512027 METAP2P50579 478 aaKnown RBP eCLIP19■□□□□ 0.63
DDX41-213ENST00000512027 EPHB4P54760 987 aa19■□□□□ 0.63
DDX41-213ENST00000512027 CHMP4BP1P59074 171 aa19■□□□□ 0.63
DDX41-213ENST00000512027 MRPS9P82933 396 aaKnown RBP19■□□□□ 0.63
DDX41-213ENST00000512027 C9orf50Q5SZB4 431 aa19■□□□□ 0.63
DDX41-213ENST00000512027 CUL5Q93034 780 aa19■□□□□ 0.63
DDX41-213ENST00000512027 UMODL1Q5DID0 1318 aa19■□□□□ 0.63
DDX41-213ENST00000512027 B4GALT4O60513 344 aa18.99■□□□□ 0.63
DDX41-213ENST00000512027 PPFIA3O75145 1194 aa18.99■□□□□ 0.63
DDX41-213ENST00000512027 SP2Q02086 613 aa18.99■□□□□ 0.63
DDX41-213ENST00000512027 MTG1Q9BT17 334 aaPredicted RBP18.99■□□□□ 0.63
DDX41-213ENST00000512027 UPF3BQ9BZI7 483 aaKnown RBP18.99■□□□□ 0.63
DDX41-213ENST00000512027 BCAS3Q9H6U6 928 aa18.99■□□□□ 0.63
DDX41-213ENST00000512027 RTEL1Q9NZ71 1219 aa18.99■□□□□ 0.63
DDX41-213ENST00000512027 V9GY48 417 aaPredicted RBP18.99■□□□□ 0.63
DDX41-213ENST00000512027 TLR3O15455 904 aaKnown RBP18.98■□□□□ 0.63
DDX41-213ENST00000512027 UBA1P22314 1058 aaKnown RBP18.98■□□□□ 0.63
DDX41-213ENST00000512027 PSMA5P28066 241 aa18.98■□□□□ 0.63
DDX41-213ENST00000512027 SHHQ15465 462 aa18.98■□□□□ 0.63
DDX41-213ENST00000512027 NBPF20Q3BBV1 942 aa18.98■□□□□ 0.63
DDX41-213ENST00000512027 BRDTQ58F21 947 aaPredicted RBP18.98■□□□□ 0.63
DDX41-213ENST00000512027 LARP6Q9BRS8 491 aaKnown RBP18.98■□□□□ 0.63
DDX41-213ENST00000512027 AGXT2Q9BYV1 514 aa18.98■□□□□ 0.63
DDX41-213ENST00000512027 PSTPIP2Q9H939 334 aa18.98■□□□□ 0.63
DDX41-213ENST00000512027 TRMT13Q9NUP7 481 aaKnown RBP18.98■□□□□ 0.63
DDX41-213ENST00000512027 PIK3CDO00329 1044 aa18.97■□□□□ 0.63
DDX41-213ENST00000512027 GGPS1O95749 300 aa18.97■□□□□ 0.63
DDX41-213ENST00000512027 TIMP1P01033 207 aa18.97■□□□□ 0.63
DDX41-213ENST00000512027 CYP2C18P33260 490 aa18.97■□□□□ 0.63
DDX41-213ENST00000512027 NAPAP54920 295 aa18.97■□□□□ 0.63
DDX41-213ENST00000512027 SEMA3FQ13275 785 aa18.97■□□□□ 0.63
DDX41-213ENST00000512027 TOB2Q14106 344 aaPredicted RBP18.97■□□□□ 0.63
DDX41-213ENST00000512027 FAM47CQ5HY64 1035 aa18.97■□□□□ 0.63
DDX41-213ENST00000512027 RUFY3Q7L099 469 aa18.97■□□□□ 0.63
DDX41-213ENST00000512027 DHX37Q8IY37 1157 aaKnown RBP18.97■□□□□ 0.63
DDX41-213ENST00000512027 ALDH8A1Q9H2A2 487 aaPredicted RBP18.97■□□□□ 0.63
DDX41-213ENST00000512027 STXBP3O00186 592 aa18.96■□□□□ 0.63
DDX41-213ENST00000512027 EPB41L2O43491 1005 aaKnown RBP18.96■□□□□ 0.63
DDX41-213ENST00000512027 ZNF286BP0CG31 522 aa18.96■□□□□ 0.63
DDX41-213ENST00000512027 RCAN1P53805 252 aa18.96■□□□□ 0.63
DDX41-213ENST00000512027 FPGSQ05932 587 aa18.96■□□□□ 0.63
DDX41-213ENST00000512027 LRIT3Q3SXY7 679 aa18.96■□□□□ 0.63
DDX41-213ENST00000512027 KAT2BQ92831 832 aa18.96■□□□□ 0.63
DDX41-213ENST00000512027 PGBD1Q96JS3 809 aa18.96■□□□□ 0.63
DDX41-213ENST00000512027 INPP4AQ96PE3 977 aaPredicted RBP18.96■□□□□ 0.63
DDX41-213ENST00000512027 NCOA5Q9HCD5 579 aaKnown RBP18.96■□□□□ 0.63
DDX41-213ENST00000512027 ZSWIM6Q9HCJ5 1215 aa18.96■□□□□ 0.63
DDX41-213ENST00000512027 NID2Q14112 1375 aa18.95■□□□□ 0.62
DDX41-213ENST00000512027 SCN5AQ14524 2016 aa18.95■□□□□ 0.62
DDX41-213ENST00000512027 RBAK-RBAKDNI3L0D1 243 aa18.95■□□□□ 0.62
DDX41-213ENST00000512027 CYP2C9P11712 490 aa18.95■□□□□ 0.62
DDX41-213ENST00000512027 CSF2RAP15509 400 aa18.95■□□□□ 0.62
DDX41-213ENST00000512027 CCT2P78371 535 aaKnown RBP18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms