RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 LTBP1Q14766 1721 aa5.56□□□□□ -1.52
USP54-217ENST00000498213 USP54Q70EL1 1684 aa5.56□□□□□ -1.52
USP54-217ENST00000498213 QRICH2Q9H0J4 1663 aa5.56□□□□□ -1.52
USP54-217ENST00000498213 LY75O60449 1722 aa5.55□□□□□ -1.52
USP54-217ENST00000498213 ITSN1Q15811 1721 aa5.55□□□□□ -1.52
USP54-217ENST00000498213 IQCA1LA6NCM1 817 aa5.55□□□□□ -1.52
USP54-217ENST00000498213 ZNF503-AS2A6NEH8 195 aa5.55□□□□□ -1.52
USP54-217ENST00000498213 RAP1GAPP47736 663 aa5.55□□□□□ -1.52
USP54-217ENST00000498213 ZNF165P49910 485 aa5.55□□□□□ -1.52
USP54-217ENST00000498213 MPZL3Q6UWV2 235 aa5.55□□□□□ -1.52
USP54-217ENST00000498213 TTC6Q86TZ1 520 aa5.55□□□□□ -1.52
USP54-217ENST00000498213 NKD1Q969G9 470 aa5.55□□□□□ -1.52
USP54-217ENST00000498213 LTV1Q96GA3 475 aaPredicted RBP5.55□□□□□ -1.52
USP54-217ENST00000498213 KIRREL1Q96J84 757 aa5.55□□□□□ -1.52
USP54-217ENST00000498213 TOX2Q96NM4 488 aa5.55□□□□□ -1.52
USP54-217ENST00000498213 SPON2Q9BUD6 331 aa5.55□□□□□ -1.52
USP54-217ENST00000498213 KRTAP4-5Q9BYR2 181 aa5.55□□□□□ -1.52
USP54-217ENST00000498213 GPR62Q9BZJ7 368 aa5.55□□□□□ -1.52
USP54-217ENST00000498213 KCNQ5Q9NR82 932 aa5.55□□□□□ -1.52
USP54-217ENST00000498213 UBP1Q9NZI7 540 aa5.55□□□□□ -1.52
USP54-217ENST00000498213 ADAMTS1Q9UHI8 967 aa5.55□□□□□ -1.52
USP54-217ENST00000498213 RAPGEFL1Q9UHV5 662 aa5.55□□□□□ -1.52
USP54-217ENST00000498213 SLIT3O75094 1523 aa5.54□□□□□ -1.52
USP54-217ENST00000498213 TRAF5O00463 557 aa5.54□□□□□ -1.52
USP54-217ENST00000498213 GREM1O60565 184 aa5.54□□□□□ -1.52
USP54-217ENST00000498213 GDNFP39905 211 aa5.54□□□□□ -1.52
USP54-217ENST00000498213 HK2P52789 917 aa5.54□□□□□ -1.52
USP54-217ENST00000498213 EGR3Q06889 387 aa5.54□□□□□ -1.52
USP54-217ENST00000498213 TMEM67Q5HYA8 995 aa5.54□□□□□ -1.52
USP54-217ENST00000498213 CST9Q5W186 159 aa5.54□□□□□ -1.52
USP54-217ENST00000498213 OVOS1Q6IE37 1185 aa5.54□□□□□ -1.52
USP54-217ENST00000498213 CTU1Q7Z7A3 348 aaKnown RBP5.54□□□□□ -1.52
USP54-217ENST00000498213 USP48Q86UV5 1035 aa5.54□□□□□ -1.52
USP54-217ENST00000498213 KCNH5Q8NCM2 988 aa5.54□□□□□ -1.52
USP54-217ENST00000498213 ZCRB1Q8TBF4 217 aaKnown RBP5.54□□□□□ -1.52
USP54-217ENST00000498213 TMEM59LQ9UK28 342 aa5.54□□□□□ -1.52
USP54-217ENST00000498213 SBF1O95248 1867 aa5.54□□□□□ -1.52
USP54-217ENST00000498213 C5P01031 1676 aa5.53□□□□□ -1.52
USP54-217ENST00000498213 ADAMTS7Q9UKP4 1686 aa5.53□□□□□ -1.52
USP54-217ENST00000498213 SLC22A31A6NKX4 558 aa5.53□□□□□ -1.52
USP54-217ENST00000498213 KRTAP9-7A8MTY7 169 aa5.53□□□□□ -1.52
USP54-217ENST00000498213 RGS13O14921 159 aa5.53□□□□□ -1.52
USP54-217ENST00000498213 DNAJA2O60884 412 aa5.53□□□□□ -1.52
USP54-217ENST00000498213 LRRN2O75325 713 aa5.53□□□□□ -1.52
USP54-217ENST00000498213 GYS1P13807 737 aa5.53□□□□□ -1.52
USP54-217ENST00000498213 CFPP27918 469 aa5.53□□□□□ -1.52
USP54-217ENST00000498213 EPHX2P34913 555 aa5.53□□□□□ -1.52
USP54-217ENST00000498213 CRKP46108 304 aa5.53□□□□□ -1.52
USP54-217ENST00000498213 DDR1Q08345 913 aa5.53□□□□□ -1.52
USP54-217ENST00000498213 ITPK1Q13572 414 aa5.53□□□□□ -1.52
USP54-217ENST00000498213 LRRFIP1Q32MZ4 808 aaKnown RBP5.53□□□□□ -1.52
USP54-217ENST00000498213 TSPYL5Q86VY4 417 aaPredicted RBP5.53□□□□□ -1.52
USP54-217ENST00000498213 CILP2Q8IUL8 1156 aa5.53□□□□□ -1.52
USP54-217ENST00000498213 RNF34Q969K3 372 aa5.53□□□□□ -1.52
USP54-217ENST00000498213 LIN37Q96GY3 246 aaPredicted RBP5.53□□□□□ -1.52
USP54-217ENST00000498213 BACH2Q9BYV9 841 aa5.53□□□□□ -1.52
USP54-217ENST00000498213 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.53□□□□□ -1.52
USP54-217ENST00000498213 DUSP15Q9H1R2 295 aaPredicted RBP5.53□□□□□ -1.52
USP54-217ENST00000498213 METTL5Q9NRN9 209 aaKnown RBP5.53□□□□□ -1.52
USP54-217ENST00000498213 HACL1Q9UJ83 578 aa5.53□□□□□ -1.52
USP54-217ENST00000498213 NSD3Q9BZ95 1437 aa5.53□□□□□ -1.52
USP54-217ENST00000498213 TOGARAM1Q9Y4F4 1720 aa5.53□□□□□ -1.52
USP54-217ENST00000498213 COL6A3P12111 3177 aa5.52□□□□□ -1.53
USP54-217ENST00000498213 C4BP0C0L5 1744 aa5.52□□□□□ -1.53
USP54-217ENST00000498213 ADGRB1O14514 1584 aa5.52□□□□□ -1.53
USP54-217ENST00000498213 SSU72P8A0A1W2PR75 194 aa5.52□□□□□ -1.53
USP54-217ENST00000498213 WASH4PA8MWX3 477 aa5.52□□□□□ -1.53
USP54-217ENST00000498213 CLEC3AO75596 197 aa5.52□□□□□ -1.53
USP54-217ENST00000498213 ATE1O95260 518 aa5.52□□□□□ -1.53
USP54-217ENST00000498213 ESR1P03372 595 aa5.52□□□□□ -1.53
USP54-217ENST00000498213 GLI1P08151 1106 aa5.52□□□□□ -1.53
USP54-217ENST00000498213 RFC4P35249 363 aa5.52□□□□□ -1.53
USP54-217ENST00000498213 RAD51AP2Q09MP3 1159 aa5.52□□□□□ -1.53
USP54-217ENST00000498213 NLRC3Q7RTR2 1065 aa5.52□□□□□ -1.53
USP54-217ENST00000498213 REXO1Q8N1G1 1221 aaKnown RBP5.52□□□□□ -1.53
USP54-217ENST00000498213 TTLL6Q8N841 843 aa5.52□□□□□ -1.53
USP54-217ENST00000498213 ZSCAN18Q8TBC5 510 aaPredicted RBP5.52□□□□□ -1.53
USP54-217ENST00000498213 DHX38Q92620 1227 aaKnown RBP5.52□□□□□ -1.53
USP54-217ENST00000498213 PPP1R16BQ96T49 567 aa5.52□□□□□ -1.53
USP54-217ENST00000498213 NT5C1AQ9BXI3 368 aa5.52□□□□□ -1.53
USP54-217ENST00000498213 EHMT1Q9H9B1 1298 aa5.52□□□□□ -1.53
USP54-217ENST00000498213 KIF13BQ9NQT8 1826 aa5.52□□□□□ -1.53
USP54-217ENST00000498213 ARFGEF1Q9Y6D6 1849 aa5.52□□□□□ -1.53
USP54-217ENST00000498213 RGPD5Q99666 1765 aa5.52□□□□□ -1.53
USP54-217ENST00000498213 DNAJC25-GNG10A0A024R161 153 aa5.51□□□□□ -1.53
USP54-217ENST00000498213 RBM47A0AV96 593 aaKnown RBP5.51□□□□□ -1.53
USP54-217ENST00000498213 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.51□□□□□ -1.53
USP54-217ENST00000498213 TSPAN15O95858 294 aa5.51□□□□□ -1.53
USP54-217ENST00000498213 POLR2BP30876 1174 aaKnown RBP5.51□□□□□ -1.53
USP54-217ENST00000498213 FANCCQ00597 558 aa5.51□□□□□ -1.53
USP54-217ENST00000498213 CLCQ05315 142 aa5.51□□□□□ -1.53
USP54-217ENST00000498213 NMIQ13287 307 aaPredicted RBP5.51□□□□□ -1.53
USP54-217ENST00000498213 RALGPS1Q5JS13 557 aa5.51□□□□□ -1.53
USP54-217ENST00000498213 FYB2Q5VWT5 728 aa5.51□□□□□ -1.53
USP54-217ENST00000498213 FBXW10Q5XX13 1052 aa5.51□□□□□ -1.53
USP54-217ENST00000498213 LRRC56Q8IYG6 542 aaPredicted RBP5.51□□□□□ -1.53
USP54-217ENST00000498213 SYNE4Q8N205 404 aa5.51□□□□□ -1.53
USP54-217ENST00000498213 OXR1Q8N573 874 aa5.51□□□□□ -1.53
USP54-217ENST00000498213 ABHD4Q8TB40 342 aa5.51□□□□□ -1.53
USP54-217ENST00000498213 SMARCC1Q92922 1105 aaPredicted RBP5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms