RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	ST13P5	Q8NFI4	369 aa	Predicted RBP	5.43	□□□□□ -1.54
VPS52-222	ENST00000495981	XAGE3	Q8WTP9	111 aa		5.43	□□□□□ -1.54
VPS52-222	ENST00000495981	MDFI	Q99750	246 aa		5.43	□□□□□ -1.54
VPS52-222	ENST00000495981	ISCA1	Q9BUE6	129 aa		5.43	□□□□□ -1.54
VPS52-222	ENST00000495981	MXD3	Q9BW11	206 aa		5.43	□□□□□ -1.54
VPS52-222	ENST00000495981	TMX1	Q9H3N1	280 aa		5.43	□□□□□ -1.54
VPS52-222	ENST00000495981	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	5.43	□□□□□ -1.54
VPS52-222	ENST00000495981	SAMM50	Q9Y512	469 aa		5.43	□□□□□ -1.54
VPS52-222	ENST00000495981	POLR2A	P24928	1970 aa	Known RBP	5.43	□□□□□ -1.54
VPS52-222	ENST00000495981	RPTOR	Q8N122	1335 aa		5.43	□□□□□ -1.54
VPS52-222	ENST00000495981	MYBBP1A	Q9BQG0	1328 aa	Known RBP	5.43	□□□□□ -1.54
VPS52-222	ENST00000495981	BDP1	A6H8Y1	2624 aa		5.43	□□□□□ -1.54
VPS52-222	ENST00000495981	NCOR1	O75376	2440 aa		5.42	□□□□□ -1.54
VPS52-222	ENST00000495981	CHL1	O00533	1208 aa		5.42	□□□□□ -1.54
VPS52-222	ENST00000495981	C2CD2L	O14523	706 aa		5.42	□□□□□ -1.54
VPS52-222	ENST00000495981	DDAH1	O94760	285 aa		5.42	□□□□□ -1.54
VPS52-222	ENST00000495981	BPNT1	O95861	308 aa		5.42	□□□□□ -1.54
VPS52-222	ENST00000495981	PDGFRB	P09619	1106 aa		5.42	□□□□□ -1.54
VPS52-222	ENST00000495981	HOXB7	P09629	217 aa		5.42	□□□□□ -1.54
VPS52-222	ENST00000495981	FAM153B	P0C7A2	387 aa		5.42	□□□□□ -1.54
VPS52-222	ENST00000495981	FGFR3	P22607	806 aa		5.42	□□□□□ -1.54
VPS52-222	ENST00000495981	GUCY2C	P25092	1073 aa		5.42	□□□□□ -1.54
VPS52-222	ENST00000495981	RPS12	P25398	132 aa	Known RBP	5.42	□□□□□ -1.54
VPS52-222	ENST00000495981	GPSM2	P81274	684 aa		5.42	□□□□□ -1.54
VPS52-222	ENST00000495981	TCIRG1	Q13488	830 aa		5.42	□□□□□ -1.54
VPS52-222	ENST00000495981	LRRC14	Q15048	493 aa		5.42	□□□□□ -1.54
VPS52-222	ENST00000495981	PPP2R5E	Q16537	467 aa		5.42	□□□□□ -1.54
VPS52-222	ENST00000495981	LRIT3	Q3SXY7	679 aa		5.42	□□□□□ -1.54
VPS52-222	ENST00000495981	HSP90AB3P	Q58FF7	597 aa		5.42	□□□□□ -1.54
VPS52-222	ENST00000495981	PERM1	Q5SV97	790 aa		5.42	□□□□□ -1.54
VPS52-222	ENST00000495981	SCARA3	Q6AZY7	606 aa		5.42	□□□□□ -1.54
VPS52-222	ENST00000495981	COPS6	Q7L5N1	327 aa		5.42	□□□□□ -1.54
VPS52-222	ENST00000495981	TAB3	Q8N5C8	712 aa	Predicted RBP	5.42	□□□□□ -1.54
VPS52-222	ENST00000495981	CCDC155	Q8N6L0	562 aa		5.42	□□□□□ -1.54
VPS52-222	ENST00000495981	SUPT20H	Q8NEM7	779 aa		5.42	□□□□□ -1.54
VPS52-222	ENST00000495981	CELF1	Q92879	486 aa	Known RBP	5.42	□□□□□ -1.54
VPS52-222	ENST00000495981	ZNF669	Q96BR6	464 aa	Predicted RBP	5.42	□□□□□ -1.54
VPS52-222	ENST00000495981	WNK4	Q96J92	1243 aa		5.42	□□□□□ -1.54
VPS52-222	ENST00000495981	SNX27	Q96L92	541 aa		5.42	□□□□□ -1.54
VPS52-222	ENST00000495981	SH2B1	Q9NRF2	756 aa	Predicted RBP	5.42	□□□□□ -1.54
VPS52-222	ENST00000495981	DACH1	Q9UI36	760 aa		5.42	□□□□□ -1.54
VPS52-222	ENST00000495981	TRIM33	Q9UPN9	1127 aa		5.42	□□□□□ -1.54
VPS52-222	ENST00000495981	CORIN	Q9Y5Q5	1042 aa		5.42	□□□□□ -1.54
VPS52-222	ENST00000495981	MANSC4	A6NHS7	340 aa	Predicted RBP	5.41	□□□□□ -1.54
VPS52-222	ENST00000495981		H7C1W4	665 aa		5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	MAN1A2	O60476	641 aa		5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	BBOX1	O75936	387 aa		5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	SMNDC1	O75940	238 aa	Known RBP eCLIP	5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	HTR3B	O95264	441 aa		5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	ASMTL	O95671	621 aa		5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	GHRH	P01286	108 aa		5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	SYN1	P17600	705 aa		5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	EIF2AK2	P19525	551 aa	Known RBP	5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	EIF2S2	P20042	333 aa	Known RBP	5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	BMP8B	P34820	402 aa		5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	RIPK4	P57078	832 aa		5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	SSRP1	Q08945	709 aa	Known RBP	5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	LMOD3	Q0VAK6	560 aa		5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	MAP3K12	Q12852	859 aa		5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	SF3B3	Q15393	1217 aa	Known RBP	5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	SYT9	Q86SS6	491 aa		5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	NBPF11	Q86T75	865 aa		5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	JAML	Q86YT9	394 aa		5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	CCDC146	Q8IYE0	955 aa		5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	PLBD2	Q8NHP8	589 aa		5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	DIS3L	Q8TF46	1054 aa	Known RBP	5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	TMEM40	Q8WWA1	233 aa		5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	GTPBP3	Q969Y2	492 aa	Known RBP	5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	TM9SF2	Q99805	663 aa		5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	IER2	Q9BTL4	223 aa		5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	NRSN2	Q9GZP1	204 aa		5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	CBX8	Q9HC52	389 aa		5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	MYOZ2	Q9NPC6	264 aa		5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	TYW1	Q9NV66	732 aa	Known RBP	5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	KLF15	Q9UIH9	416 aa		5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	ANGEL1	Q9UNK9	670 aa	Known RBP	5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	NR2E3	Q9Y5X4	410 aa		5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	AOX1	Q06278	1338 aa		5.41	□□□□□ -1.54
VPS52-222	ENST00000495981	MUC6	Q6W4X9	2439 aa		5.4	□□□□□ -1.54
VPS52-222	ENST00000495981	COL1A1	P02452	1464 aa	Predicted RBP	5.4	□□□□□ -1.54
VPS52-222	ENST00000495981	CACNA1G	O43497	2377 aa		5.4	□□□□□ -1.54
VPS52-222	ENST00000495981	TMEM265	A0A087WTH1	108 aa		5.4	□□□□□ -1.54
VPS52-222	ENST00000495981	FARP2	O94887	1054 aa	Predicted RBP	5.4	□□□□□ -1.54
VPS52-222	ENST00000495981	ECEL1	O95672	775 aa		5.4	□□□□□ -1.54
VPS52-222	ENST00000495981	NEFM	P07197	916 aa		5.4	□□□□□ -1.54
VPS52-222	ENST00000495981	ZNF853	P0CG23	659 aa		5.4	□□□□□ -1.54
VPS52-222	ENST00000495981	CCL5	P13501	91 aa		5.4	□□□□□ -1.54
VPS52-222	ENST00000495981	EPHA1	P21709	976 aa		5.4	□□□□□ -1.54
VPS52-222	ENST00000495981	MAGEA10	P43363	369 aa	Predicted RBP	5.4	□□□□□ -1.54
VPS52-222	ENST00000495981	CDKN1C	P49918	316 aa	Predicted RBP	5.4	□□□□□ -1.54
VPS52-222	ENST00000495981	INPP5A	Q14642	412 aa		5.4	□□□□□ -1.54
VPS52-222	ENST00000495981	TCEA2	Q15560	299 aa		5.4	□□□□□ -1.54
VPS52-222	ENST00000495981	C21orf62-AS1	Q17RA5	79 aa		5.4	□□□□□ -1.54
VPS52-222	ENST00000495981	CCDC181	Q5TID7	509 aa		5.4	□□□□□ -1.54
VPS52-222	ENST00000495981	ZNF468	Q5VIY5	522 aa	Predicted RBP	5.4	□□□□□ -1.54
VPS52-222	ENST00000495981	LRFN4	Q6PJG9	635 aa		5.4	□□□□□ -1.54
VPS52-222	ENST00000495981	DDX46	Q7L014	1031 aa	Known RBP	5.4	□□□□□ -1.54
VPS52-222	ENST00000495981	THNSL2	Q86YJ6	484 aa		5.4	□□□□□ -1.54
VPS52-222	ENST00000495981	FAM43A	Q8N2R8	423 aa		5.4	□□□□□ -1.54
VPS52-222	ENST00000495981	USP38	Q8NB14	1042 aa		5.4	□□□□□ -1.54

Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms