RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 PPP1R12CQ9BZL4 782 aa17.89■□□□□ 0.46
CCDC88B-209ENST00000494080 RIMS1Q86UR5 1692 aaKnown RBP17.89■□□□□ 0.46
CCDC88B-209ENST00000494080 SLC7A5Q01650 507 aa17.89■□□□□ 0.45
CCDC88B-209ENST00000494080 VWA3BQ502W6 1294 aa17.89■□□□□ 0.45
CCDC88B-209ENST00000494080 POLR2MP0CAP2 368 aa17.89■□□□□ 0.45
CCDC88B-209ENST00000494080 KRT5P13647 590 aa17.89■□□□□ 0.45
CCDC88B-209ENST00000494080 PTPROQ16827 1216 aa17.89■□□□□ 0.45
CCDC88B-209ENST00000494080 NSUN4Q96CB9 384 aaKnown RBP17.89■□□□□ 0.45
CCDC88B-209ENST00000494080 TSKSQ9UJT2 592 aa17.89■□□□□ 0.45
CCDC88B-209ENST00000494080 NTSR2O95665 410 aa17.89■□□□□ 0.45
CCDC88B-209ENST00000494080 NPR1P16066 1061 aa17.89■□□□□ 0.45
CCDC88B-209ENST00000494080 PLCG1P19174 1290 aa17.89■□□□□ 0.45
CCDC88B-209ENST00000494080 SNAP25P60880 206 aa17.89■□□□□ 0.45
CCDC88B-209ENST00000494080 GRM1Q13255 1194 aa17.89■□□□□ 0.45
CCDC88B-209ENST00000494080 SETDB1Q15047 1291 aa17.89■□□□□ 0.45
CCDC88B-209ENST00000494080 ARHGAP44Q17R89 818 aa17.89■□□□□ 0.45
CCDC88B-209ENST00000494080 SFMBT2Q5VUG0 894 aa17.89■□□□□ 0.45
CCDC88B-209ENST00000494080 IGDCC4Q8TDY8 1250 aa17.89■□□□□ 0.45
CCDC88B-209ENST00000494080 GJD4Q96KN9 370 aaPredicted RBP17.89■□□□□ 0.45
CCDC88B-209ENST00000494080 CNOT6LQ96LI5 555 aaKnown RBP17.89■□□□□ 0.45
CCDC88B-209ENST00000494080 STK38LQ9Y2H1 464 aa17.89■□□□□ 0.45
CCDC88B-209ENST00000494080 CEP83Q9Y592 693 aa17.89■□□□□ 0.45
CCDC88B-209ENST00000494080 SORBS3O60504 671 aa17.88■□□□□ 0.45
CCDC88B-209ENST00000494080 CYP27A1Q02318 531 aa17.88■□□□□ 0.45
CCDC88B-209ENST00000494080 DAAM2Q86T65 1068 aa17.88■□□□□ 0.45
CCDC88B-209ENST00000494080 GJA10Q969M2 543 aa17.88■□□□□ 0.45
CCDC88B-209ENST00000494080 LSM14BQ9BX40 385 aaKnown RBP17.88■□□□□ 0.45
CCDC88B-209ENST00000494080 EPB41L4AQ9HCS5 686 aaPredicted RBP17.88■□□□□ 0.45
CCDC88B-209ENST00000494080 UTP11Q9Y3A2 253 aaKnown RBP17.88■□□□□ 0.45
CCDC88B-209ENST00000494080 PNPLA7Q6ZV29 1317 aa17.88■□□□□ 0.45
CCDC88B-209ENST00000494080 STK36Q9NRP7 1315 aa17.88■□□□□ 0.45
CCDC88B-209ENST00000494080 USP17L5A8MUK1 530 aa17.88■□□□□ 0.45
CCDC88B-209ENST00000494080 HOOK3Q86VS8 718 aa17.88■□□□□ 0.45
CCDC88B-209ENST00000494080 CEP95Q96GE4 821 aa17.88■□□□□ 0.45
CCDC88B-209ENST00000494080 ZNF408Q9H9D4 720 aa17.88■□□□□ 0.45
CCDC88B-209ENST00000494080 PI4KBQ9UBF8 816 aa17.88■□□□□ 0.45
CCDC88B-209ENST00000494080 ARMCX3Q9UH62 379 aaPredicted RBP17.88■□□□□ 0.45
CCDC88B-209ENST00000494080 FAM184BQ9ULE4 1060 aa17.88■□□□□ 0.45
CCDC88B-209ENST00000494080 REREQ9P2R6 1566 aa17.88■□□□□ 0.45
CCDC88B-209ENST00000494080 FOXN1O15353 648 aa17.88■□□□□ 0.45
CCDC88B-209ENST00000494080 PRPHP41219 470 aa17.88■□□□□ 0.45
CCDC88B-209ENST00000494080 GPSM2P81274 684 aa17.88■□□□□ 0.45
CCDC88B-209ENST00000494080 INTS8Q75QN2 995 aaKnown RBP17.88■□□□□ 0.45
CCDC88B-209ENST00000494080 MIGA2Q7L4E1 593 aa17.88■□□□□ 0.45
CCDC88B-209ENST00000494080 CCDC170Q8IYT3 715 aa17.88■□□□□ 0.45
CCDC88B-209ENST00000494080 SUGCTQ9HAC7 445 aa17.88■□□□□ 0.45
CCDC88B-209ENST00000494080 GDAQ9Y2T3 454 aa17.88■□□□□ 0.45
CCDC88B-209ENST00000494080 RICTORQ6R327 1708 aa17.88■□□□□ 0.45
CCDC88B-209ENST00000494080 LAD1O00515 517 aa17.88■□□□□ 0.45
CCDC88B-209ENST00000494080 XRCC5P13010 732 aaKnown RBP17.88■□□□□ 0.45
CCDC88B-209ENST00000494080 SF3B3Q15393 1217 aaKnown RBP17.88■□□□□ 0.45
CCDC88B-209ENST00000494080 SHC4Q6S5L8 630 aa17.88■□□□□ 0.45
CCDC88B-209ENST00000494080 EPB41L5Q9HCM4 733 aa17.88■□□□□ 0.45
CCDC88B-209ENST00000494080 CTDNEP1O95476 244 aa17.87■□□□□ 0.45
CCDC88B-209ENST00000494080 BRD2P25440 801 aaKnown RBP17.87■□□□□ 0.45
CCDC88B-209ENST00000494080 PFKFB3Q16875 520 aaPredicted RBP17.87■□□□□ 0.45
CCDC88B-209ENST00000494080 MIER3Q7Z3K6 550 aa17.87■□□□□ 0.45
CCDC88B-209ENST00000494080 CCDC77Q9BR77 488 aa17.87■□□□□ 0.45
CCDC88B-209ENST00000494080 FLOT1O75955 427 aa17.87■□□□□ 0.45
CCDC88B-209ENST00000494080 FDPSP14324 419 aaKnown RBP17.87■□□□□ 0.45
CCDC88B-209ENST00000494080 ADAM9Q13443 819 aa17.87■□□□□ 0.45
CCDC88B-209ENST00000494080 SLFN12Q8IYM2 578 aa17.87■□□□□ 0.45
CCDC88B-209ENST00000494080 TEX33O43247 280 aa17.87■□□□□ 0.45
CCDC88B-209ENST00000494080 ZBTB16Q05516 673 aa17.87■□□□□ 0.45
CCDC88B-209ENST00000494080 TEX2Q8IWB9 1127 aa17.87■□□□□ 0.45
CCDC88B-209ENST00000494080 LMNTD2Q8IXW0 634 aa17.87■□□□□ 0.45
CCDC88B-209ENST00000494080 TCP11Q8WWU5 503 aa17.87■□□□□ 0.45
CCDC88B-209ENST00000494080 AK8Q96MA6 479 aa17.87■□□□□ 0.45
CCDC88B-209ENST00000494080 MRPL11Q9Y3B7 192 aaKnown RBP17.87■□□□□ 0.45
CCDC88B-209ENST00000494080 MEIS1O00470 390 aa17.86■□□□□ 0.45
CCDC88B-209ENST00000494080 RXRBP28702 533 aa17.86■□□□□ 0.45
CCDC88B-209ENST00000494080 TNFAIP1Q13829 316 aa17.86■□□□□ 0.45
CCDC88B-209ENST00000494080 ATP6V0A2Q9Y487 856 aa17.86■□□□□ 0.45
CCDC88B-209ENST00000494080 FAM205CA6NFA0 338 aa17.86■□□□□ 0.45
CCDC88B-209ENST00000494080 C21orf2O43822 256 aa17.86■□□□□ 0.45
CCDC88B-209ENST00000494080 N4BP1O75113 896 aaKnown RBP17.86■□□□□ 0.45
CCDC88B-209ENST00000494080 PLCB3Q01970 1234 aa17.86■□□□□ 0.45
CCDC88B-209ENST00000494080 ZNF658Q5TYW1 1059 aaPredicted RBP17.86■□□□□ 0.45
CCDC88B-209ENST00000494080 STAG2Q8N3U4 1231 aa17.86■□□□□ 0.45
CCDC88B-209ENST00000494080 LRRN4CLQ8ND94 238 aa17.86■□□□□ 0.45
CCDC88B-209ENST00000494080 TRIM7Q9C029 511 aa17.86■□□□□ 0.45
CCDC88B-209ENST00000494080 CHUKO15111 745 aa17.86■□□□□ 0.45
CCDC88B-209ENST00000494080 HEXIM1O94992 359 aaKnown RBP17.86■□□□□ 0.45
CCDC88B-209ENST00000494080 BMP3P12645 472 aa17.86■□□□□ 0.45
CCDC88B-209ENST00000494080 APBA1Q02410 837 aa17.86■□□□□ 0.45
CCDC88B-209ENST00000494080 CALCOCO2Q13137 446 aa17.86■□□□□ 0.45
CCDC88B-209ENST00000494080 MTMR3Q13615 1198 aa17.86■□□□□ 0.45
CCDC88B-209ENST00000494080 CCPG1Q9ULG6 757 aa17.86■□□□□ 0.45
CCDC88B-209ENST00000494080 GINS2Q9Y248 185 aa17.86■□□□□ 0.45
CCDC88B-209ENST00000494080 KCNK3O14649 394 aa17.86■□□□□ 0.45
CCDC88B-209ENST00000494080 POLR2FP61218 127 aaKnown RBP17.86■□□□□ 0.45
CCDC88B-209ENST00000494080 C6orf163Q5TEZ5 329 aa17.86■□□□□ 0.45
CCDC88B-209ENST00000494080 FAM178BQ8IXR5 827 aa17.86■□□□□ 0.45
CCDC88B-209ENST00000494080 CUL4BQ13620 913 aa17.85■□□□□ 0.45
CCDC88B-209ENST00000494080 NLRX1Q86UT6 975 aa17.85■□□□□ 0.45
CCDC88B-209ENST00000494080 VSIG1Q86XK7 387 aa17.85■□□□□ 0.45
CCDC88B-209ENST00000494080 P2RX5Q93086 422 aa17.85■□□□□ 0.45
CCDC88B-209ENST00000494080 KRT12Q99456 494 aa17.85■□□□□ 0.45
CCDC88B-209ENST00000494080 MYO5BQ9ULV0 1848 aa17.85■□□□□ 0.45
CCDC88B-209ENST00000494080 FBXW10Q5XX13 1052 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 106.5 ms