RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 SPAG5Q96R06 1193 aa11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 B4DLN1 442 aa11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 ORC4O43929 436 aa11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 FCER1AP12319 257 aa11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 TUBB2AQ13885 445 aa11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 CASP8Q14790 479 aa11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 SLC15A2Q16348 729 aa11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 FOXP4Q8IVH2 680 aaPredicted RBP11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 PROM2Q8N271 834 aa11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 NEDD1Q8NHV4 660 aa11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 TUBB2BQ9BVA1 445 aa11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 OSBPL5Q9H0X9 879 aaPredicted RBP11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 ABCB6Q9NP58 842 aa11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 FAM169AQ9Y6X4 670 aa11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 KCNJ18B7U540 433 aa11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 PSMD14O00487 310 aa11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 TADA3O75528 432 aa11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 BMP3P12645 472 aa11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 KCNJ12Q14500 433 aa11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 IQCB1Q15051 598 aa11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 CCDC93Q567U6 631 aa11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 SPECC1LQ69YQ0 1117 aa11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 SARM1Q6SZW1 724 aa11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 PHF20Q9BVI0 1012 aa11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 BAIAP2L1Q9UHR4 511 aa11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 GINS2Q9Y248 185 aa11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 FAM13AO94988 1023 aa11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 TRIM6Q9C030 488 aaPredicted RBP11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 KCPQ6ZWJ8 1503 aa11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 TMCO5BA8MYB1 307 aa11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 E9PMD0 336 aa11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 BUB1BO60566 1050 aaPredicted RBP11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 PTPAQ15257 358 aa11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 RBBP5Q15291 538 aaKnown RBP11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 ERMNQ8TAM6 284 aa11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 ACER1Q8TDN7 264 aa11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 CRAMP1Q96RY5 1269 aa11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 PCDHA6Q9UN73 950 aa11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 PCDHA8Q9Y5H6 950 aa11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 GPR75-ASB3A0A0A6YYF3 556 aa11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 SOWAHDA6NJG2 315 aa11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 CYTH3O43739 400 aa11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 GCNT3O95395 438 aa11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 PDHBP11177 359 aa11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 MAP2K1Q02750 393 aaPredicted RBP11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 PPFIA1Q13136 1202 aa11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 TNIP1Q15025 636 aa11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 NYAP1Q6ZVC0 841 aa11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 SND1Q7KZF4 910 aaKnown RBP eCLIP11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 SMCR8Q8TEV9 937 aaPredicted RBP11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 PDE4DIPQ5VU43 2346 aa11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 EIF2AK2P19525 551 aaKnown RBP11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 MTF1Q14872 753 aa11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 CPLX4Q7Z7G2 160 aa11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 CCDC50Q8IVM0 306 aa11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 AMNQ9BXJ7 453 aa11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 IRX2Q9BZI1 471 aaPredicted RBP11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 PICK1Q9NRD5 415 aa11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 BARHL2Q9NY43 387 aa11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 MAD2L2Q9UI95 211 aa11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 CDC23Q9UJX2 597 aa11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 CCPG1Q9ULG6 757 aa11.85□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 CLIC2O15247 247 aa11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 PCP11498 1178 aaKnown RBP11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 CTTNQ14247 550 aaKnown RBP11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 GRM4Q14833 912 aa11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 CFAP58Q5T655 872 aa11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 FBXW10Q5XX13 1052 aa11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 MYCT1Q8N699 235 aa11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 BICD1Q96G01 975 aa11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 NPHP3-ACAD11A0A0J9YXS1 232 aa11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 POTEB3A0JP26 581 aa11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 CCDC169A6NNP5 214 aa11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 POTECB2RU33 542 aa11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 CHUKO15111 745 aa11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 CCZ1BP86790 482 aa11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 CCZ1P86791 482 aaPredicted RBP11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 RBL2Q08999 1139 aa11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 IFFO1Q0D2I5 559 aa11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 PRPF4BQ13523 1007 aaKnown RBP11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 RCSD1Q6JBY9 416 aa11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 POTEBQ6S5H4 581 aa11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 PACS2Q86VP3 889 aa11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 CCDC42Q96M95 316 aa11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 AFDNP55196 1824 aaKnown RBP11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 ROBO1Q9Y6N7 1651 aa11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 A6NNZ2 444 aa11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 GAS7O60861 476 aa11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 PRCPP42785 496 aa11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 ATP1A2P50993 1020 aa11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 CORO7P57737 925 aa11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 NBPF9Q3BBW0 867 aa11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 TUBB8Q3ZCM7 444 aa11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 E4F1Q66K89 784 aaPredicted RBP11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 PNMA8AQ86V59 439 aaPredicted RBP11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 LZTS2Q9BRK4 669 aa11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 CCDC113Q9H0I3 377 aa11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 MRPL44Q9H9J2 332 aaKnown RBP11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 DISC1Q9NRI5 854 aa11.84□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 DONSONQ9NYP3 566 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms