RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 USP17L6PQ6QN14 398 aa28.48■■■□□ 2.15
UPF3A-209ENST00000492270 BRF1Q92994 677 aa28.48■■■□□ 2.15
UPF3A-209ENST00000492270 USP26Q9BXU7 913 aa28.48■■■□□ 2.15
UPF3A-209ENST00000492270 RBM28Q9NW13 759 aaKnown RBP28.48■■■□□ 2.15
UPF3A-209ENST00000492270 LAMA3Q16787 3333 aa28.48■■■□□ 2.15
UPF3A-209ENST00000492270 MROH7Q68CQ1 1323 aa28.47■■■□□ 2.15
UPF3A-209ENST00000492270 MYL3P08590 195 aa28.47■■■□□ 2.15
UPF3A-209ENST00000492270 CDC27P30260 824 aa28.47■■■□□ 2.15
UPF3A-209ENST00000492270 PURAQ00577 322 aaKnown RBP28.47■■■□□ 2.15
UPF3A-209ENST00000492270 FUT2Q10981 343 aa28.47■■■□□ 2.15
UPF3A-209ENST00000492270 ITGA7Q13683 1181 aa28.47■■■□□ 2.15
UPF3A-209ENST00000492270 FAM126BQ8IXS8 530 aa28.47■■■□□ 2.15
UPF3A-209ENST00000492270 GPKOWQ92917 476 aaPredicted RBP eCLIP28.47■■■□□ 2.15
UPF3A-209ENST00000492270 FAM217BQ9NTX9 383 aaPredicted RBP28.47■■■□□ 2.15
UPF3A-209ENST00000492270 TMEM39AQ9NV64 488 aa28.47■■■□□ 2.15
UPF3A-209ENST00000492270 FRMPD4Q14CM0 1322 aa28.46■■■□□ 2.15
UPF3A-209ENST00000492270 MEIS2O14770 477 aa28.46■■■□□ 2.15
UPF3A-209ENST00000492270 KIAA0355O15063 1070 aa28.46■■■□□ 2.15
UPF3A-209ENST00000492270 EPB41L2O43491 1005 aaKnown RBP28.46■■■□□ 2.15
UPF3A-209ENST00000492270 ARHGAP1Q07960 439 aa28.46■■■□□ 2.15
UPF3A-209ENST00000492270 VSIG10LQ86VR7 867 aa28.46■■■□□ 2.15
UPF3A-209ENST00000492270 TDHQ8IZJ6 230 aa28.46■■■□□ 2.15
UPF3A-209ENST00000492270 SLC43A3Q8NBI5 491 aa28.46■■■□□ 2.15
UPF3A-209ENST00000492270 POLR3EQ9NVU0 708 aa28.46■■■□□ 2.15
UPF3A-209ENST00000492270 SZT2Q5T011 3432 aa28.45■■■□□ 2.15
UPF3A-209ENST00000492270 A6NJR5 290 aa28.45■■■□□ 2.14
UPF3A-209ENST00000492270 SOX1O00570 391 aaPredicted RBP28.45■■■□□ 2.14
UPF3A-209ENST00000492270 SMARCC2Q8TAQ2 1214 aa28.45■■■□□ 2.14
UPF3A-209ENST00000492270 DDX41Q9UJV9 622 aaKnown RBP28.45■■■□□ 2.14
UPF3A-209ENST00000492270 TBX21Q9UL17 535 aa28.45■■■□□ 2.14
UPF3A-209ENST00000492270 MRVI1Q9Y6F6 885 aa28.45■■■□□ 2.14
UPF3A-209ENST00000492270 GH1P01241 217 aa28.44■■■□□ 2.14
UPF3A-209ENST00000492270 PSMA5P28066 241 aa28.44■■■□□ 2.14
UPF3A-209ENST00000492270 CCND2P30279 289 aa28.44■■■□□ 2.14
UPF3A-209ENST00000492270 HEATR3Q7Z4Q2 680 aa28.44■■■□□ 2.14
UPF3A-209ENST00000492270 PIK3CDO00329 1044 aa28.43■■■□□ 2.14
UPF3A-209ENST00000492270 RAG1P15918 1043 aa28.43■■■□□ 2.14
UPF3A-209ENST00000492270 WWC2Q6AWC2 1192 aa28.43■■■□□ 2.14
UPF3A-209ENST00000492270 PPP1R13LQ8WUF5 828 aa28.43■■■□□ 2.14
UPF3A-209ENST00000492270 AFG1LQ8WV93 481 aa28.43■■■□□ 2.14
UPF3A-209ENST00000492270 CUL5Q93034 780 aa28.43■■■□□ 2.14
UPF3A-209ENST00000492270 AGXT2Q9BYV1 514 aa28.43■■■□□ 2.14
UPF3A-209ENST00000492270 CD4P01730 458 aa28.42■■■□□ 2.14
UPF3A-209ENST00000492270 MMP3P08254 477 aa28.42■■■□□ 2.14
UPF3A-209ENST00000492270 ADD1P35611 737 aaKnown RBP28.42■■■□□ 2.14
UPF3A-209ENST00000492270 METAP2P50579 478 aaKnown RBP eCLIP28.42■■■□□ 2.14
UPF3A-209ENST00000492270 RCAN1P53805 252 aa28.42■■■□□ 2.14
UPF3A-209ENST00000492270 MRPS9P82933 396 aaKnown RBP28.42■■■□□ 2.14
UPF3A-209ENST00000492270 UBE2SQ16763 222 aa28.42■■■□□ 2.14
UPF3A-209ENST00000492270 BRDTQ58F21 947 aaPredicted RBP28.42■■■□□ 2.14
UPF3A-209ENST00000492270 MTG1Q9BT17 334 aaPredicted RBP28.42■■■□□ 2.14
UPF3A-209ENST00000492270 TLR3O15455 904 aaKnown RBP28.41■■■□□ 2.14
UPF3A-209ENST00000492270 SORBS3O60504 671 aa28.41■■■□□ 2.14
UPF3A-209ENST00000492270 TYW1BQ6NUM6 668 aa28.41■■■□□ 2.14
UPF3A-209ENST00000492270 FBXL16Q8N461 479 aa28.41■■■□□ 2.14
UPF3A-209ENST00000492270 PSTPIP2Q9H939 334 aa28.41■■■□□ 2.14
UPF3A-209ENST00000492270 V9GY48 417 aaPredicted RBP28.41■■■□□ 2.14
UPF3A-209ENST00000492270 NID2Q14112 1375 aa28.4■■■□□ 2.14
UPF3A-209ENST00000492270 RUFY3Q7L099 469 aa28.4■■■□□ 2.14
UPF3A-209ENST00000492270 LRCH3Q96II8 777 aa28.4■■■□□ 2.14
UPF3A-209ENST00000492270 TRPV6Q9H1D0 765 aa28.4■■■□□ 2.14
UPF3A-209ENST00000492270 ZSWIM6Q9HCJ5 1215 aa28.4■■■□□ 2.14
UPF3A-209ENST00000492270 B4GALT4O60513 344 aa28.39■■■□□ 2.14
UPF3A-209ENST00000492270 SP2Q02086 613 aa28.39■■■□□ 2.14
UPF3A-209ENST00000492270 PPP1R12CQ9BZL4 782 aa28.39■■■□□ 2.14
UPF3A-209ENST00000492270 RTEL1Q9NZ71 1219 aa28.39■■■□□ 2.14
UPF3A-209ENST00000492270 TIMP1P01033 207 aa28.38■■■□□ 2.13
UPF3A-209ENST00000492270 UBA1P22314 1058 aaKnown RBP28.38■■■□□ 2.13
UPF3A-209ENST00000492270 EPHB4P54760 987 aa28.38■■■□□ 2.13
UPF3A-209ENST00000492270 NAPAP54920 295 aa28.38■■■□□ 2.13
UPF3A-209ENST00000492270 TOB2Q14106 344 aaPredicted RBP28.38■■■□□ 2.13
UPF3A-209ENST00000492270 NBPF20Q3BBV1 942 aa28.38■■■□□ 2.13
UPF3A-209ENST00000492270 C9orf50Q5SZB4 431 aa28.38■■■□□ 2.13
UPF3A-209ENST00000492270 EMID1Q96A84 441 aaPredicted RBP28.38■■■□□ 2.13
UPF3A-209ENST00000492270 UPF3BQ9BZI7 483 aaKnown RBP28.38■■■□□ 2.13
UPF3A-209ENST00000492270 LAMA2P24043 3122 aaKnown RBP28.37■■■□□ 2.13
UPF3A-209ENST00000492270 STXBP3O00186 592 aa28.37■■■□□ 2.13
UPF3A-209ENST00000492270 KPNA6O60684 536 aa28.37■■■□□ 2.13
UPF3A-209ENST00000492270 GGPS1O95749 300 aa28.37■■■□□ 2.13
UPF3A-209ENST00000492270 DHX37Q8IY37 1157 aaKnown RBP28.37■■■□□ 2.13
UPF3A-209ENST00000492270 INPP4AQ96PE3 977 aaPredicted RBP28.37■■■□□ 2.13
UPF3A-209ENST00000492270 ALDH8A1Q9H2A2 487 aaPredicted RBP28.37■■■□□ 2.13
UPF3A-209ENST00000492270 BCAS3Q9H6U6 928 aa28.37■■■□□ 2.13
UPF3A-209ENST00000492270 CHMP4BP1P59074 171 aa28.36■■■□□ 2.13
UPF3A-209ENST00000492270 FPGSQ05932 587 aa28.36■■■□□ 2.13
UPF3A-209ENST00000492270 SEMA3FQ13275 785 aa28.36■■■□□ 2.13
UPF3A-209ENST00000492270 SHHQ15465 462 aa28.36■■■□□ 2.13
UPF3A-209ENST00000492270 LRIT3Q3SXY7 679 aa28.36■■■□□ 2.13
UPF3A-209ENST00000492270 MYSM1Q5VVJ2 828 aa28.36■■■□□ 2.13
UPF3A-209ENST00000492270 PCNX4Q63HM2 1172 aa28.36■■■□□ 2.13
UPF3A-209ENST00000492270 KCNV1Q6PIU1 500 aa28.36■■■□□ 2.13
UPF3A-209ENST00000492270 SEZ6LQ9BYH1 1024 aa28.36■■■□□ 2.13
UPF3A-209ENST00000492270 TRMT13Q9NUP7 481 aaKnown RBP28.36■■■□□ 2.13
UPF3A-209ENST00000492270 CYP46A1Q9Y6A2 500 aa28.36■■■□□ 2.13
UPF3A-209ENST00000492270 UMODL1Q5DID0 1318 aa28.36■■■□□ 2.13
UPF3A-209ENST00000492270 SCN5AQ14524 2016 aa28.35■■■□□ 2.13
UPF3A-209ENST00000492270 PPFIA3O75145 1194 aa28.35■■■□□ 2.13
UPF3A-209ENST00000492270 LAMC2Q13753 1193 aa28.35■■■□□ 2.13
UPF3A-209ENST00000492270 FAM47CQ5HY64 1035 aa28.35■■■□□ 2.13
UPF3A-209ENST00000492270 CELF3Q5SZQ8 465 aaKnown RBP28.35■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms