RNA–Protein interactions for RNA: ENST00000489352.5

HDAC6-233, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-233ENST00000489352 SMC4Q9NTJ3 1288 aa13.8□□□□□ -0.2
HDAC6-233ENST00000489352 CYP39A1Q9NYL5 469 aa13.8□□□□□ -0.2
HDAC6-233ENST00000489352 C5orf67F2Z3F1 127 aa13.79□□□□□ -0.2
HDAC6-233ENST00000489352 PTK7Q13308 1070 aa13.79□□□□□ -0.2
HDAC6-233ENST00000489352 MTMR3Q13615 1198 aa13.79□□□□□ -0.2
HDAC6-233ENST00000489352 C16orf86Q6ZW13 317 aa13.79□□□□□ -0.2
HDAC6-233ENST00000489352 EFHBQ8N7U6 833 aa13.79□□□□□ -0.2
HDAC6-233ENST00000489352 KREMEN2Q8NCW0 462 aa13.79□□□□□ -0.2
HDAC6-233ENST00000489352 DHX38Q92620 1227 aaKnown RBP13.79□□□□□ -0.2
HDAC6-233ENST00000489352 HAUS7Q99871 368 aa13.79□□□□□ -0.2
HDAC6-233ENST00000489352 ATP8A2Q9NTI2 1148 aa13.79□□□□□ -0.2
HDAC6-233ENST00000489352 DLL3Q9NYJ7 618 aa13.79□□□□□ -0.2
HDAC6-233ENST00000489352 CLEC1BQ9P126 229 aa13.79□□□□□ -0.2
HDAC6-233ENST00000489352 CLIP2Q9UDT6 1046 aa13.79□□□□□ -0.2
HDAC6-233ENST00000489352 ATF7P17544 494 aaPredicted RBP13.78□□□□□ -0.2
HDAC6-233ENST00000489352 SDHBP21912 280 aa13.78□□□□□ -0.2
HDAC6-233ENST00000489352 CLCN5P51795 746 aa13.78□□□□□ -0.2
HDAC6-233ENST00000489352 TTF1Q15361 905 aaPredicted RBP13.78□□□□□ -0.2
HDAC6-233ENST00000489352 RSPO4Q2I0M5 234 aaPredicted RBP13.78□□□□□ -0.2
HDAC6-233ENST00000489352 RBM23Q86U06 439 aaKnown RBP13.78□□□□□ -0.2
HDAC6-233ENST00000489352 SESTD1Q86VW0 696 aa13.78□□□□□ -0.2
HDAC6-233ENST00000489352 SEPT8Q92599 483 aa13.78□□□□□ -0.2
HDAC6-233ENST00000489352 ANTXR1Q9H6X2 564 aa13.78□□□□□ -0.2
HDAC6-233ENST00000489352 NYAP2Q9P242 653 aa13.78□□□□□ -0.2
HDAC6-233ENST00000489352 FAM208BQ5VWN6 2430 aa13.78□□□□□ -0.2
HDAC6-233ENST00000489352 USP24Q9UPU5 2620 aa13.77□□□□□ -0.2
HDAC6-233ENST00000489352 RBM47A0AV96 593 aaKnown RBP13.77□□□□□ -0.21
HDAC6-233ENST00000489352 MYH7BA7E2Y1 1941 aa13.77□□□□□ -0.21
HDAC6-233ENST00000489352 RSPH10B2B2RC85 870 aa13.77□□□□□ -0.21
HDAC6-233ENST00000489352 MMP1P03956 469 aa13.77□□□□□ -0.21
HDAC6-233ENST00000489352 LCTP09848 1927 aa13.77□□□□□ -0.21
HDAC6-233ENST00000489352 RSPH10BP0C881 870 aa13.77□□□□□ -0.21
HDAC6-233ENST00000489352 TXNP10599 105 aaKnown RBP13.77□□□□□ -0.21
HDAC6-233ENST00000489352 NRIP1P48552 1158 aa13.77□□□□□ -0.21
HDAC6-233ENST00000489352 STAT2P52630 851 aa13.77□□□□□ -0.21
HDAC6-233ENST00000489352 PDE4DQ08499 809 aa13.77□□□□□ -0.21
HDAC6-233ENST00000489352 C12orf60Q5U649 245 aa13.77□□□□□ -0.21
HDAC6-233ENST00000489352 KIAA0319Q5VV43 1072 aa13.77□□□□□ -0.21
HDAC6-233ENST00000489352 LCORLQ8N3X6 602 aa13.77□□□□□ -0.21
HDAC6-233ENST00000489352 MORC4Q8TE76 937 aa13.77□□□□□ -0.21
HDAC6-233ENST00000489352 SCFD2Q8WU76 684 aa13.77□□□□□ -0.21
HDAC6-233ENST00000489352 CHURC1Q8WUH1 139 aa13.77□□□□□ -0.21
HDAC6-233ENST00000489352 CTAGE1Q96RT6 745 aa13.77□□□□□ -0.21
HDAC6-233ENST00000489352 API5Q9BZZ5 524 aaKnown RBP13.77□□□□□ -0.21
HDAC6-233ENST00000489352 GTF2IRD1Q9UHL9 959 aa13.77□□□□□ -0.21
HDAC6-233ENST00000489352 BARX2Q9UMQ3 279 aaPredicted RBP13.77□□□□□ -0.21
HDAC6-233ENST00000489352 SORCS3Q9UPU3 1222 aa13.77□□□□□ -0.21
HDAC6-233ENST00000489352 CYP2D7A0A087X1C5 515 aa13.76□□□□□ -0.21
HDAC6-233ENST00000489352 TMEM232C9JQI7 657 aa13.76□□□□□ -0.21
HDAC6-233ENST00000489352 BMP3P12645 472 aa13.76□□□□□ -0.21
HDAC6-233ENST00000489352 CASTP20810 708 aaKnown RBP13.76□□□□□ -0.21
HDAC6-233ENST00000489352 SP100P23497 879 aaPredicted RBP13.76□□□□□ -0.21
HDAC6-233ENST00000489352 ALDH5A1P51649 535 aaPredicted RBP13.76□□□□□ -0.21
HDAC6-233ENST00000489352 ANGPT1Q15389 498 aa13.76□□□□□ -0.21
HDAC6-233ENST00000489352 RPAP2Q8IXW5 612 aaPredicted RBP13.76□□□□□ -0.21
HDAC6-233ENST00000489352 DHX37Q8IY37 1157 aaKnown RBP13.76□□□□□ -0.21
HDAC6-233ENST00000489352 FLCNQ8NFG4 579 aa13.76□□□□□ -0.21
HDAC6-233ENST00000489352 CYP2W1Q8TAV3 490 aa13.76□□□□□ -0.21
HDAC6-233ENST00000489352 ALG1Q9BT22 464 aa13.76□□□□□ -0.21
HDAC6-233ENST00000489352 CCDC8Q9H0W5 538 aaPredicted RBP13.76□□□□□ -0.21
HDAC6-233ENST00000489352 ARMT1Q9H993 441 aa13.76□□□□□ -0.21
HDAC6-233ENST00000489352 MKNK2Q9HBH9 465 aa13.76□□□□□ -0.21
HDAC6-233ENST00000489352 TSHZ2Q9NRE2 1034 aa13.76□□□□□ -0.21
HDAC6-233ENST00000489352 HDAC6Q9UBN7 1215 aa13.76□□□□□ -0.21
HDAC6-233ENST00000489352 RALYQ9UKM9 306 aaKnown RBP13.76□□□□□ -0.21
HDAC6-233ENST00000489352 NR2E1Q9Y466 385 aa13.76□□□□□ -0.21
HDAC6-233ENST00000489352 ZNF532Q9HCE3 1301 aa13.75□□□□□ -0.21
HDAC6-233ENST00000489352 LOC102724159A0A0B4J2E5 919 aa13.75□□□□□ -0.21
HDAC6-233ENST00000489352 PDE6AP16499 860 aa13.75□□□□□ -0.21
HDAC6-233ENST00000489352 THPOP40225 353 aa13.75□□□□□ -0.21
HDAC6-233ENST00000489352 PWP2Q15269 919 aaKnown RBP13.75□□□□□ -0.21
HDAC6-233ENST00000489352 ALDH1L2Q3SY69 923 aa13.75□□□□□ -0.21
HDAC6-233ENST00000489352 RUBCNQ92622 972 aa13.75□□□□□ -0.21
HDAC6-233ENST00000489352 COPS5Q92905 334 aa13.75□□□□□ -0.21
HDAC6-233ENST00000489352 PURBQ96QR8 312 aaKnown RBP13.75□□□□□ -0.21
HDAC6-233ENST00000489352 KATNAL1Q9BW62 490 aa13.75□□□□□ -0.21
HDAC6-233ENST00000489352 DBNLQ9UJU6 430 aaKnown RBP13.75□□□□□ -0.21
HDAC6-233ENST00000489352 PNMA6EA0A0J9YXQ4 647 aa13.74□□□□□ -0.21
HDAC6-233ENST00000489352 PTPDC1A2A3K4 754 aa13.74□□□□□ -0.21
HDAC6-233ENST00000489352 B4DLN1 442 aa13.74□□□□□ -0.21
HDAC6-233ENST00000489352 GNAI2P04899 355 aa13.74□□□□□ -0.21
HDAC6-233ENST00000489352 MRPL12P52815 198 aaKnown RBP13.74□□□□□ -0.21
HDAC6-233ENST00000489352 MBTPS1Q14703 1052 aa13.74□□□□□ -0.21
HDAC6-233ENST00000489352 PLEKHG4Q58EX7 1191 aa13.74□□□□□ -0.21
HDAC6-233ENST00000489352 MUM1L1Q5H9M0 696 aa13.74□□□□□ -0.21
HDAC6-233ENST00000489352 FAM160B2Q86V87 743 aa13.74□□□□□ -0.21
HDAC6-233ENST00000489352 PLVAPQ9BX97 442 aa13.74□□□□□ -0.21
HDAC6-233ENST00000489352 TLE6Q9H808 572 aa13.74□□□□□ -0.21
HDAC6-233ENST00000489352 GREB1LQ9C091 1923 aaPredicted RBP13.73□□□□□ -0.21
HDAC6-233ENST00000489352 FSD2A1L4K1 749 aa13.73□□□□□ -0.21
HDAC6-233ENST00000489352 PRKAB2O43741 272 aa13.73□□□□□ -0.21
HDAC6-233ENST00000489352 BRD1O95696 1058 aa13.73□□□□□ -0.21
HDAC6-233ENST00000489352 SRGAP2BP0DMP2 458 aa13.73□□□□□ -0.21
HDAC6-233ENST00000489352 BAATQ14032 418 aaPredicted RBP13.73□□□□□ -0.21
HDAC6-233ENST00000489352 BTG3Q14201 252 aaPredicted RBP13.73□□□□□ -0.21
HDAC6-233ENST00000489352 DGKDQ16760 1214 aa13.73□□□□□ -0.21
HDAC6-233ENST00000489352 SLFN13Q68D06 897 aa13.73□□□□□ -0.21
HDAC6-233ENST00000489352 CHST3Q7LGC8 479 aa13.73□□□□□ -0.21
HDAC6-233ENST00000489352 ADGRD2Q7Z7M1 963 aa13.73□□□□□ -0.21
HDAC6-233ENST00000489352 MICAL1Q8TDZ2 1067 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms