RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 PLAAQ9Y263 795 aa7.82□□□□□ -1.16
USP48-209ENST00000487880 PCDHA9Q9Y5H5 950 aa7.82□□□□□ -1.16
USP48-209ENST00000487880 PCDHA8Q9Y5H6 950 aa7.82□□□□□ -1.16
USP48-209ENST00000487880 TCRBV16S1A1N1A0A5B0 115 aa7.81□□□□□ -1.16
USP48-209ENST00000487880 DNAJC8O75937 253 aaPredicted RBP7.81□□□□□ -1.16
USP48-209ENST00000487880 SOD2P04179 222 aa7.81□□□□□ -1.16
USP48-209ENST00000487880 SDHBP21912 280 aa7.81□□□□□ -1.16
USP48-209ENST00000487880 YBX1P67809 324 aaKnown RBP7.81□□□□□ -1.16
USP48-209ENST00000487880 PAK1Q13153 545 aa7.81□□□□□ -1.16
USP48-209ENST00000487880 PAQR3Q6TCH7 311 aa7.81□□□□□ -1.16
USP48-209ENST00000487880 PCDH19Q8TAB3 1148 aa7.81□□□□□ -1.16
USP48-209ENST00000487880 USP33Q8TEY7 942 aa7.81□□□□□ -1.16
USP48-209ENST00000487880 MAGEB10Q96LZ2 347 aaPredicted RBP7.81□□□□□ -1.16
USP48-209ENST00000487880 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.81□□□□□ -1.16
USP48-209ENST00000487880 A0A1W2PQJ5 194 aa7.8□□□□□ -1.16
USP48-209ENST00000487880 OR14I1A6ND48 311 aa7.8□□□□□ -1.16
USP48-209ENST00000487880 HRKO00198 91 aa7.8□□□□□ -1.16
USP48-209ENST00000487880 NTRK1P04629 796 aa7.8□□□□□ -1.16
USP48-209ENST00000487880 MPOP05164 745 aa7.8□□□□□ -1.16
USP48-209ENST00000487880 SDSP20132 328 aa7.8□□□□□ -1.16
USP48-209ENST00000487880 SLC6A11P48066 632 aa7.8□□□□□ -1.16
USP48-209ENST00000487880 RPTNQ6XPR3 784 aa7.8□□□□□ -1.16
USP48-209ENST00000487880 CABP7Q86V35 215 aa7.8□□□□□ -1.16
USP48-209ENST00000487880 CHAMP1Q96JM3 812 aa7.8□□□□□ -1.16
USP48-209ENST00000487880 EPB41L1Q9H4G0 881 aa7.8□□□□□ -1.16
USP48-209ENST00000487880 INTS7Q9NVH2 962 aaKnown RBP7.8□□□□□ -1.16
USP48-209ENST00000487880 NR1I3Q14994 352 aa7.79□□□□□ -1.16
USP48-209ENST00000487880 HABP4Q5JVS0 413 aaKnown RBP7.79□□□□□ -1.16
USP48-209ENST00000487880 ZNF552Q9H707 407 aaPredicted RBP7.79□□□□□ -1.16
USP48-209ENST00000487880 IPPKQ9H8X2 491 aa7.79□□□□□ -1.16
USP48-209ENST00000487880 KLHL14Q9P2G3 628 aa7.79□□□□□ -1.16
USP48-209ENST00000487880 MAGEC2Q9UBF1 373 aaPredicted RBP7.79□□□□□ -1.16
USP48-209ENST00000487880 COA3Q9Y2R0 106 aaPredicted RBP7.79□□□□□ -1.16
USP48-209ENST00000487880 FAM47E-STBD1D6RA91 191 aa7.78□□□□□ -1.16
USP48-209ENST00000487880 KCNA6P17658 529 aa7.78□□□□□ -1.16
USP48-209ENST00000487880 PDE6BP35913 854 aa7.78□□□□□ -1.16
USP48-209ENST00000487880 MAPKAPK2P49137 400 aa7.78□□□□□ -1.16
USP48-209ENST00000487880 GYS2P54840 703 aa7.78□□□□□ -1.16
USP48-209ENST00000487880 C21orf62-AS1Q17RA5 79 aa7.78□□□□□ -1.16
USP48-209ENST00000487880 PLEKHN1Q494U1 663 aaPredicted RBP7.78□□□□□ -1.16
USP48-209ENST00000487880 TM4SF20Q53R12 229 aa7.78□□□□□ -1.16
USP48-209ENST00000487880 EMC4Q5J8M3 183 aa7.78□□□□□ -1.16
USP48-209ENST00000487880 MPZL3Q6UWV2 235 aa7.78□□□□□ -1.16
USP48-209ENST00000487880 DCP2Q8IU60 420 aaKnown RBP7.78□□□□□ -1.16
USP48-209ENST00000487880 NIM1KQ8IY84 436 aa7.78□□□□□ -1.16
USP48-209ENST00000487880 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.78□□□□□ -1.16
USP48-209ENST00000487880 JAM3Q9BX67 310 aa7.78□□□□□ -1.16
USP48-209ENST00000487880 FAM53CQ9NYF3 392 aa7.78□□□□□ -1.16
USP48-209ENST00000487880 NUDT19A8MXV4 375 aa7.77□□□□□ -1.17
USP48-209ENST00000487880 ABLIM1O14639 778 aa7.77□□□□□ -1.17
USP48-209ENST00000487880 DGKIO75912 1065 aa7.77□□□□□ -1.17
USP48-209ENST00000487880 ASLP04424 464 aa7.77□□□□□ -1.17
USP48-209ENST00000487880 CKMP06732 381 aa7.77□□□□□ -1.17
USP48-209ENST00000487880 RAB3GAP1Q15042 981 aa7.77□□□□□ -1.17
USP48-209ENST00000487880 ABHD17CQ6PCB6 329 aa7.77□□□□□ -1.17
USP48-209ENST00000487880 MFSD3Q96ES6 412 aa7.77□□□□□ -1.17
USP48-209ENST00000487880 PEX11GQ96HA9 241 aa7.77□□□□□ -1.17
USP48-209ENST00000487880 TNPO3Q9Y5L0 923 aaKnown RBP7.77□□□□□ -1.17
USP48-209ENST00000487880 ZC3H12DA2A288 527 aaKnown RBP7.76□□□□□ -1.17
USP48-209ENST00000487880 FAM83GA6ND36 823 aa7.76□□□□□ -1.17
USP48-209ENST00000487880 IGFALSP35858 605 aa7.76□□□□□ -1.17
USP48-209ENST00000487880 TMEM62Q0P6H9 643 aa7.76□□□□□ -1.17
USP48-209ENST00000487880 ZNF460Q14592 562 aa7.76□□□□□ -1.17
USP48-209ENST00000487880 PRR23BQ6ZRT6 265 aa7.76□□□□□ -1.17
USP48-209ENST00000487880 OTOP3Q7RTS5 596 aa7.76□□□□□ -1.17
USP48-209ENST00000487880 SEC14L1Q92503 715 aa7.76□□□□□ -1.17
USP48-209ENST00000487880 TSPAN17Q96FV3 270 aa7.76□□□□□ -1.17
USP48-209ENST00000487880 CELF4Q9BZC1 486 aaKnown RBP7.76□□□□□ -1.17
USP48-209ENST00000487880 NUDT5Q9UKK9 219 aa7.76□□□□□ -1.17
USP48-209ENST00000487880 HCFC2Q9Y5Z7 792 aa7.76□□□□□ -1.17
USP48-209ENST00000487880 F8W031 263 aaPredicted RBP7.75□□□□□ -1.17
USP48-209ENST00000487880 IRS4O14654 1257 aaPredicted RBP7.75□□□□□ -1.17
USP48-209ENST00000487880 SGSM2O43147 1006 aa7.75□□□□□ -1.17
USP48-209ENST00000487880 TADA3O75528 432 aa7.75□□□□□ -1.17
USP48-209ENST00000487880 C16orf59Q7L2K0 433 aa7.75□□□□□ -1.17
USP48-209ENST00000487880 ZC3H7AQ8IWR0 971 aaKnown RBP7.75□□□□□ -1.17
USP48-209ENST00000487880 DHX37Q8IY37 1157 aaKnown RBP7.75□□□□□ -1.17
USP48-209ENST00000487880 FBXW5Q969U6 566 aa7.75□□□□□ -1.17
USP48-209ENST00000487880 KCNJ15Q99712 375 aa7.75□□□□□ -1.17
USP48-209ENST00000487880 EPB41L4BQ9H329 900 aa7.75□□□□□ -1.17
USP48-209ENST00000487880 NSUN3Q9H649 340 aaKnown RBP7.75□□□□□ -1.17
USP48-209ENST00000487880 RXFP1Q9HBX9 757 aa7.75□□□□□ -1.17
USP48-209ENST00000487880 SLC6A20Q9NP91 592 aa7.75□□□□□ -1.17
USP48-209ENST00000487880 ZNF652Q9Y2D9 606 aa7.75□□□□□ -1.17
USP48-209ENST00000487880 SIT1Q9Y3P8 196 aa7.75□□□□□ -1.17
USP48-209ENST00000487880 CCDC66A2RUB6 948 aa7.74□□□□□ -1.17
USP48-209ENST00000487880 LRRC10BA6NIK2 292 aa7.74□□□□□ -1.17
USP48-209ENST00000487880 B4E1Z4 1266 aa7.74□□□□□ -1.17
USP48-209ENST00000487880 PEX10O60683 326 aa7.74□□□□□ -1.17
USP48-209ENST00000487880 CLSTN1O94985 981 aa7.74□□□□□ -1.17
USP48-209ENST00000487880 SRGAP2CP0DJJ0 459 aa7.74□□□□□ -1.17
USP48-209ENST00000487880 POU3F2P20265 443 aaPredicted RBP7.74□□□□□ -1.17
USP48-209ENST00000487880 VIPR1P32241 457 aa7.74□□□□□ -1.17
USP48-209ENST00000487880 PRR5P85299 388 aa7.74□□□□□ -1.17
USP48-209ENST00000487880 SPIRE1Q08AE8 756 aa7.74□□□□□ -1.17
USP48-209ENST00000487880 SLC9A5Q14940 896 aa7.74□□□□□ -1.17
USP48-209ENST00000487880 CHRNA2Q15822 529 aa7.74□□□□□ -1.17
USP48-209ENST00000487880 TAF7LQ5H9L4 462 aa7.74□□□□□ -1.17
USP48-209ENST00000487880 STEAP3Q658P3 488 aa7.74□□□□□ -1.17
USP48-209ENST00000487880 CYP4F22Q6NT55 531 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms