RNA–Protein interactions for RNA: ENST00000487496.1

SPEN-205, Transcript of spen family transcriptional repressor, humanhuman

TSL 1 (best)

Gene SPEN, Length 543 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPEN-205ENST00000487496 SYNE3Q6ZMZ3 975 aa13.23□□□□□ -0.29
SPEN-205ENST00000487496 TMTC3Q6ZXV5 915 aa13.23□□□□□ -0.29
SPEN-205ENST00000487496 MICU3Q86XE3 530 aa13.23□□□□□ -0.29
SPEN-205ENST00000487496 IL31RAQ8NI17 732 aa13.23□□□□□ -0.29
SPEN-205ENST00000487496 BRPF3Q9ULD4 1205 aa13.23□□□□□ -0.29
SPEN-205ENST00000487496 MRVI1Q9Y6F6 885 aa13.23□□□□□ -0.29
SPEN-205ENST00000487496 LAMA3Q16787 3333 aa13.23□□□□□ -0.29
SPEN-205ENST00000487496 SZT2Q5T011 3432 aa13.22□□□□□ -0.29
SPEN-205ENST00000487496 B4GALT4O60513 344 aa13.22□□□□□ -0.29
SPEN-205ENST00000487496 RGS20O76081 388 aa13.22□□□□□ -0.29
SPEN-205ENST00000487496 HMGB1P09429 215 aaKnown RBP13.22□□□□□ -0.29
SPEN-205ENST00000487496 HSPA4P34932 840 aa13.22□□□□□ -0.29
SPEN-205ENST00000487496 APOA5Q6Q788 366 aa13.22□□□□□ -0.29
SPEN-205ENST00000487496 CCDC82Q8N4S0 544 aa13.22□□□□□ -0.29
SPEN-205ENST00000487496 AFG1LQ8WV93 481 aa13.22□□□□□ -0.29
SPEN-205ENST00000487496 ZFP91Q96JP5 570 aaPredicted RBP13.22□□□□□ -0.29
SPEN-205ENST00000487496 PPP1R12CQ9BZL4 782 aa13.22□□□□□ -0.29
SPEN-205ENST00000487496 TRPV6Q9H1D0 765 aa13.22□□□□□ -0.29
SPEN-205ENST00000487496 ALDH8A1Q9H2A2 487 aaPredicted RBP13.22□□□□□ -0.29
SPEN-205ENST00000487496 PPP4R2Q9NY27 417 aa13.22□□□□□ -0.29
SPEN-205ENST00000487496 hCG_1642624A0A1W2PR95 340 aa13.21□□□□□ -0.29
SPEN-205ENST00000487496 PIK3CDO00329 1044 aa13.21□□□□□ -0.29
SPEN-205ENST00000487496 MEIS2O14770 477 aa13.21□□□□□ -0.29
SPEN-205ENST00000487496 REC8O95072 547 aa13.21□□□□□ -0.29
SPEN-205ENST00000487496 MMP3P08254 477 aa13.21□□□□□ -0.29
SPEN-205ENST00000487496 CCND2P30279 289 aa13.21□□□□□ -0.29
SPEN-205ENST00000487496 NBPF20Q3BBV1 942 aa13.21□□□□□ -0.29
SPEN-205ENST00000487496 USP17L6PQ6QN14 398 aa13.21□□□□□ -0.29
SPEN-205ENST00000487496 SMARCC2Q8TAQ2 1214 aa13.21□□□□□ -0.29
SPEN-205ENST00000487496 EMID1Q96A84 441 aaPredicted RBP13.21□□□□□ -0.29
SPEN-205ENST00000487496 RBM28Q9NW13 759 aaKnown RBP13.21□□□□□ -0.29
SPEN-205ENST00000487496 SNX14Q9Y5W7 946 aa13.21□□□□□ -0.29
SPEN-205ENST00000487496 FRMPD4Q14CM0 1322 aa13.2□□□□□ -0.3
SPEN-205ENST00000487496 ZBTB43O43298 467 aa13.2□□□□□ -0.3
SPEN-205ENST00000487496 CPA1P15085 419 aa13.2□□□□□ -0.3
SPEN-205ENST00000487496 CSF2RAP15509 400 aa13.2□□□□□ -0.3
SPEN-205ENST00000487496 CASTP20810 708 aaKnown RBP13.2□□□□□ -0.3
SPEN-205ENST00000487496 CYP2C18P33260 490 aa13.2□□□□□ -0.3
SPEN-205ENST00000487496 LAMC2Q13753 1193 aa13.2□□□□□ -0.3
SPEN-205ENST00000487496 RTN1Q16799 776 aa13.2□□□□□ -0.3
SPEN-205ENST00000487496 ERICH6BQ5W0A0 696 aa13.2□□□□□ -0.3
SPEN-205ENST00000487496 NFRKBQ6P4R8 1299 aa13.2□□□□□ -0.3
SPEN-205ENST00000487496 KCNV1Q6PIU1 500 aa13.2□□□□□ -0.3
SPEN-205ENST00000487496 PPP4R3CPQ6ZMV5 832 aa13.2□□□□□ -0.3
SPEN-205ENST00000487496 TMEM199Q8N511 208 aa13.2□□□□□ -0.3
SPEN-205ENST00000487496 PPP1R13LQ8WUF5 828 aa13.2□□□□□ -0.3
SPEN-205ENST00000487496 CUL5Q93034 780 aa13.2□□□□□ -0.3
SPEN-205ENST00000487496 JAKMIP1Q96N16 626 aaKnown RBP13.2□□□□□ -0.3
SPEN-205ENST00000487496 HIPK3Q9H422 1215 aa13.2□□□□□ -0.3
SPEN-205ENST00000487496 TRMT13Q9NUP7 481 aaKnown RBP13.2□□□□□ -0.3
SPEN-205ENST00000487496 UMODL1Q5DID0 1318 aa13.19□□□□□ -0.3
SPEN-205ENST00000487496 KLF18A0A0U1RQI7 1052 aa13.19□□□□□ -0.3
SPEN-205ENST00000487496 SUPT20HL2P0C7V6 817 aa13.19□□□□□ -0.3
SPEN-205ENST00000487496 TGFB3P10600 412 aa13.19□□□□□ -0.3
SPEN-205ENST00000487496 RCAN1P53805 252 aa13.19□□□□□ -0.3
SPEN-205ENST00000487496 MRPS9P82933 396 aaKnown RBP13.19□□□□□ -0.3
SPEN-205ENST00000487496 FGD1P98174 961 aa13.19□□□□□ -0.3
SPEN-205ENST00000487496 SP2Q02086 613 aa13.19□□□□□ -0.3
SPEN-205ENST00000487496 FUT2Q10981 343 aa13.19□□□□□ -0.3
SPEN-205ENST00000487496 PPIGQ13427 754 aaKnown RBP eCLIP13.19□□□□□ -0.3
SPEN-205ENST00000487496 DGKDQ16760 1214 aa13.19□□□□□ -0.3
SPEN-205ENST00000487496 FAM47CQ5HY64 1035 aa13.19□□□□□ -0.3
SPEN-205ENST00000487496 MYSM1Q5VVJ2 828 aa13.19□□□□□ -0.3
SPEN-205ENST00000487496 Q7L0L9 218 aa13.19□□□□□ -0.3
SPEN-205ENST00000487496 C16orf59Q7L2K0 433 aa13.19□□□□□ -0.3
SPEN-205ENST00000487496 DHX37Q8IY37 1157 aaKnown RBP13.19□□□□□ -0.3
SPEN-205ENST00000487496 PPTC7Q8NI37 304 aa13.19□□□□□ -0.3
SPEN-205ENST00000487496 KAT2BQ92831 832 aa13.19□□□□□ -0.3
SPEN-205ENST00000487496 GPKOWQ92917 476 aaPredicted RBP eCLIP13.19□□□□□ -0.3
SPEN-205ENST00000487496 RNPC3Q96LT9 517 aaKnown RBP13.19□□□□□ -0.3
SPEN-205ENST00000487496 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.19□□□□□ -0.3
SPEN-205ENST00000487496 NOC4LQ9BVI4 516 aaKnown RBP13.19□□□□□ -0.3
SPEN-205ENST00000487496 PSTPIP2Q9H939 334 aa13.19□□□□□ -0.3
SPEN-205ENST00000487496 FAM217BQ9NTX9 383 aaPredicted RBP13.19□□□□□ -0.3
SPEN-205ENST00000487496 RTEL1Q9NZ71 1219 aa13.19□□□□□ -0.3
SPEN-205ENST00000487496 KIAA1217Q5T5P2 1943 aa13.19□□□□□ -0.3
SPEN-205ENST00000487496 CNTNAP5Q8WYK1 1306 aa13.18□□□□□ -0.3
SPEN-205ENST00000487496 GOLGA8AA7E2F4 631 aa13.18□□□□□ -0.3
SPEN-205ENST00000487496 GOLGA8BA8MQT2 603 aa13.18□□□□□ -0.3
SPEN-205ENST00000487496 EPB41L2O43491 1005 aaKnown RBP13.18□□□□□ -0.3
SPEN-205ENST00000487496 STAM2O75886 525 aa13.18□□□□□ -0.3
SPEN-205ENST00000487496 GGPS1O95749 300 aa13.18□□□□□ -0.3
SPEN-205ENST00000487496 CYP2C9P11712 490 aa13.18□□□□□ -0.3
SPEN-205ENST00000487496 UBA1P22314 1058 aaKnown RBP13.18□□□□□ -0.3
SPEN-205ENST00000487496 ICAM3P32942 547 aa13.18□□□□□ -0.3
SPEN-205ENST00000487496 CHMP4BP1P59074 171 aa13.18□□□□□ -0.3
SPEN-205ENST00000487496 PTPN11Q06124 597 aaPredicted RBP13.18□□□□□ -0.3
SPEN-205ENST00000487496 CELF3Q5SZQ8 465 aaKnown RBP13.18□□□□□ -0.3
SPEN-205ENST00000487496 BLOC1S2Q6QNY1 142 aa13.18□□□□□ -0.3
SPEN-205ENST00000487496 Q6ZUG5 572 aa13.18□□□□□ -0.3
SPEN-205ENST00000487496 HEATR3Q7Z4Q2 680 aa13.18□□□□□ -0.3
SPEN-205ENST00000487496 DEFB123Q8N688 67 aa13.18□□□□□ -0.3
SPEN-205ENST00000487496 INPP4AQ96PE3 977 aaPredicted RBP13.18□□□□□ -0.3
SPEN-205ENST00000487496 SCN10AQ9Y5Y9 1956 aa13.18□□□□□ -0.3
SPEN-205ENST00000487496 SPATA31C2B4DYI2 1134 aa13.17□□□□□ -0.3
SPEN-205ENST00000487496 SORBS3O60504 671 aa13.17□□□□□ -0.3
SPEN-205ENST00000487496 PPFIA4O75335 1185 aa13.17□□□□□ -0.3
SPEN-205ENST00000487496 ACRP10323 421 aa13.17□□□□□ -0.3
SPEN-205ENST00000487496 HOXD8P13378 290 aaPredicted RBP13.17□□□□□ -0.3
SPEN-205ENST00000487496 RPS6KB1P23443 525 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms