RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 SCRN1Q12765 414 aa16.95■□□□□ 0.3
USP4-212ENST00000486549 TTLL4Q14679 1199 aa16.95■□□□□ 0.3
USP4-212ENST00000486549 KCNA10Q16322 511 aa16.95■□□□□ 0.3
USP4-212ENST00000486549 PKN1Q16512 942 aa16.95■□□□□ 0.3
USP4-212ENST00000486549 GNASQ5JWF2 1037 aa16.95■□□□□ 0.3
USP4-212ENST00000486549 CPLX2Q6PUV4 134 aaKnown RBP16.95■□□□□ 0.3
USP4-212ENST00000486549 TRIM22Q8IYM9 498 aa16.95■□□□□ 0.3
USP4-212ENST00000486549 KLHDC9Q8NEP7 349 aa16.95■□□□□ 0.3
USP4-212ENST00000486549 COPS5Q92905 334 aa16.95■□□□□ 0.3
USP4-212ENST00000486549 PHF24Q9UPV7 400 aa16.95■□□□□ 0.3
USP4-212ENST00000486549 A0A1W2PQ45 241 aaPredicted RBP16.94■□□□□ 0.3
USP4-212ENST00000486549 A0A1W2PQY0 241 aa16.94■□□□□ 0.3
USP4-212ENST00000486549 SPDYE3A6NKU9 549 aa16.94■□□□□ 0.3
USP4-212ENST00000486549 PFKFB2O60825 505 aa16.94■□□□□ 0.3
USP4-212ENST00000486549 DTNBO60941 627 aa16.94■□□□□ 0.3
USP4-212ENST00000486549 ACLYP53396 1101 aa16.94■□□□□ 0.3
USP4-212ENST00000486549 FSCN1Q16658 493 aaKnown RBP16.94■□□□□ 0.3
USP4-212ENST00000486549 LRRC26Q2I0M4 334 aa16.94■□□□□ 0.3
USP4-212ENST00000486549 VSIG10LQ86VR7 867 aa16.94■□□□□ 0.3
USP4-212ENST00000486549 OR6J1Q8NGC5 347 aa16.94■□□□□ 0.3
USP4-212ENST00000486549 PGBD1Q96JS3 809 aa16.94■□□□□ 0.3
USP4-212ENST00000486549 RIC8AQ9NPQ8 531 aa16.94■□□□□ 0.3
USP4-212ENST00000486549 MRVI1Q9Y6F6 885 aa16.94■□□□□ 0.3
USP4-212ENST00000486549 FRMPD4Q14CM0 1322 aa16.94■□□□□ 0.3
USP4-212ENST00000486549 CTAGE5O15320 804 aa16.93■□□□□ 0.3
USP4-212ENST00000486549 LARGE1O95461 756 aa16.93■□□□□ 0.3
USP4-212ENST00000486549 ASGR1P07306 291 aa16.93■□□□□ 0.3
USP4-212ENST00000486549 CST5P28325 142 aaPredicted RBP16.93■□□□□ 0.3
USP4-212ENST00000486549 BMP8BP34820 402 aa16.93■□□□□ 0.3
USP4-212ENST00000486549 RBM25P49756 843 aaKnown RBP16.93■□□□□ 0.3
USP4-212ENST00000486549 ME3Q16798 604 aa16.93■□□□□ 0.3
USP4-212ENST00000486549 LY6KQ17RY6 165 aa16.93■□□□□ 0.3
USP4-212ENST00000486549 NECAB1Q8N987 351 aa16.93■□□□□ 0.3
USP4-212ENST00000486549 PCSK9Q8NBP7 692 aaKnown RBP16.93■□□□□ 0.3
USP4-212ENST00000486549 CCDC12Q8WUD4 166 aaPredicted RBP16.93■□□□□ 0.3
USP4-212ENST00000486549 KIF2CQ99661 725 aa16.93■□□□□ 0.3
USP4-212ENST00000486549 TSEN34Q9BSV6 310 aaKnown RBP16.93■□□□□ 0.3
USP4-212ENST00000486549 TMEM260Q9NX78 707 aa16.93■□□□□ 0.3
USP4-212ENST00000486549 RTEL1Q9NZ71 1219 aa16.93■□□□□ 0.3
USP4-212ENST00000486549 PCDHA6Q9UN73 950 aa16.93■□□□□ 0.3
USP4-212ENST00000486549 Q9Y3F1 56 aa16.93■□□□□ 0.3
USP4-212ENST00000486549 PCDHA8Q9Y5H6 950 aa16.93■□□□□ 0.3
USP4-212ENST00000486549 MYH7BA7E2Y1 1941 aa16.93■□□□□ 0.3
USP4-212ENST00000486549 MOXD2PA6NHM9 499 aa16.92■□□□□ 0.3
USP4-212ENST00000486549 NKRFO15226 690 aaKnown RBP eCLIP16.92■□□□□ 0.3
USP4-212ENST00000486549 SORBS3O60504 671 aa16.92■□□□□ 0.3
USP4-212ENST00000486549 FXR1P51114 621 aaKnown RBP eCLIP16.92■□□□□ 0.3
USP4-212ENST00000486549 MRPS9P82933 396 aaKnown RBP16.92■□□□□ 0.3
USP4-212ENST00000486549 CCSAPQ6IQ19 270 aaPredicted RBP16.92■□□□□ 0.3
USP4-212ENST00000486549 VTI1AQ96AJ9 217 aa16.92■□□□□ 0.3
USP4-212ENST00000486549 EHMT1Q9H9B1 1298 aa16.92■□□□□ 0.3
USP4-212ENST00000486549 STARD7Q9NQZ5 370 aa16.92■□□□□ 0.3
USP4-212ENST00000486549 VPS54Q9P1Q0 977 aa16.92■□□□□ 0.3
USP4-212ENST00000486549 PRKAG2Q9UGJ0 569 aa16.92■□□□□ 0.3
USP4-212ENST00000486549 ATP11BQ9Y2G3 1177 aa16.92■□□□□ 0.3
USP4-212ENST00000486549 DNAH12Q6ZR08 3092 aa16.91■□□□□ 0.3
USP4-212ENST00000486549 DOCK5Q9H7D0 1870 aa16.91■□□□□ 0.3
USP4-212ENST00000486549 ZEB2O60315 1214 aa16.91■□□□□ 0.3
USP4-212ENST00000486549 CDKL5O76039 1030 aa16.91■□□□□ 0.3
USP4-212ENST00000486549 RGS20O76081 388 aa16.91■□□□□ 0.3
USP4-212ENST00000486549 DEXIO95424 95 aa16.91■□□□□ 0.3
USP4-212ENST00000486549 RTP1P59025 263 aa16.91■□□□□ 0.3
USP4-212ENST00000486549 JAKMIP3Q5VZ66 844 aa16.91■□□□□ 0.3
USP4-212ENST00000486549 PCNX4Q63HM2 1172 aa16.91■□□□□ 0.3
USP4-212ENST00000486549 CCDC62Q6P9F0 684 aa16.91■□□□□ 0.3
USP4-212ENST00000486549 SLC39A5Q6ZMH5 540 aa16.91■□□□□ 0.3
USP4-212ENST00000486549 CCDC148Q8NFR7 591 aa16.91■□□□□ 0.3
USP4-212ENST00000486549 ANO3Q9BYT9 981 aa16.91■□□□□ 0.3
USP4-212ENST00000486549 GLT8D2Q9H1C3 349 aa16.91■□□□□ 0.3
USP4-212ENST00000486549 PRO3102Q9H379 93 aa16.91■□□□□ 0.3
USP4-212ENST00000486549 C6orf50Q9HD87 102 aa16.91■□□□□ 0.3
USP4-212ENST00000486549 DDX41Q9UJV9 622 aaKnown RBP16.91■□□□□ 0.3
USP4-212ENST00000486549 GH1P01241 217 aa16.9■□□□□ 0.3
USP4-212ENST00000486549 MYL3P08590 195 aa16.9■□□□□ 0.3
USP4-212ENST00000486549 CPT1AP50416 773 aa16.9■□□□□ 0.3
USP4-212ENST00000486549 NKX3-2P78367 333 aa16.9■□□□□ 0.3
USP4-212ENST00000486549 GNPTABQ3T906 1256 aa16.9■□□□□ 0.3
USP4-212ENST00000486549 TRIM60Q495X7 471 aa16.9■□□□□ 0.3
USP4-212ENST00000486549 CXCL17Q6UXB2 119 aa16.9■□□□□ 0.3
USP4-212ENST00000486549 GTF3C6Q969F1 213 aa16.9■□□□□ 0.3
USP4-212ENST00000486549 GLT1D1Q96MS3 346 aa16.9■□□□□ 0.3
USP4-212ENST00000486549 AIFM3Q96NN9 605 aa16.9■□□□□ 0.3
USP4-212ENST00000486549 ZMYND12Q9H0C1 365 aa16.9■□□□□ 0.3
USP4-212ENST00000486549 ESYT2A0FGR8 921 aa16.89■□□□□ 0.29
USP4-212ENST00000486549 ADAMTS3O15072 1205 aa16.89■□□□□ 0.29
USP4-212ENST00000486549 STAM2O75886 525 aa16.89■□□□□ 0.29
USP4-212ENST00000486549 GNA11P29992 359 aa16.89■□□□□ 0.29
USP4-212ENST00000486549 ARHGAP1Q07960 439 aa16.89■□□□□ 0.29
USP4-212ENST00000486549 AP3B2Q13367 1082 aa16.89■□□□□ 0.29
USP4-212ENST00000486549 BRDTQ58F21 947 aaPredicted RBP16.89■□□□□ 0.29
USP4-212ENST00000486549 REXO1Q8N1G1 1221 aaKnown RBP16.89■□□□□ 0.29
USP4-212ENST00000486549 GDF15Q99988 308 aa16.89■□□□□ 0.29
USP4-212ENST00000486549 LBHD1Q9BQE6 289 aaPredicted RBP16.89■□□□□ 0.29
USP4-212ENST00000486549 ZMYND8Q9ULU4 1186 aaPredicted RBP16.89■□□□□ 0.29
USP4-212ENST00000486549 CTDNEP1O95476 244 aa16.88■□□□□ 0.29
USP4-212ENST00000486549 GGPS1O95749 300 aa16.88■□□□□ 0.29
USP4-212ENST00000486549 FOSP01100 380 aaPredicted RBP16.88■□□□□ 0.29
USP4-212ENST00000486549 SYN1P17600 705 aa16.88■□□□□ 0.29
USP4-212ENST00000486549 UBA1P22314 1058 aaKnown RBP16.88■□□□□ 0.29
USP4-212ENST00000486549 CLK2P49760 499 aaKnown RBP16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms