RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 C8orf37Q96NL8 207 aa6.23□□□□□ -1.41
VPS41-213ENST00000485955 KCNC2Q96PR1 638 aa6.23□□□□□ -1.41
VPS41-213ENST00000485955 SYT3Q9BQG1 590 aa6.23□□□□□ -1.41
VPS41-213ENST00000485955 CDIP1Q9H305 208 aa6.23□□□□□ -1.41
VPS41-213ENST00000485955 PRODHO43272 600 aa6.22□□□□□ -1.41
VPS41-213ENST00000485955 MSCO60682 206 aa6.22□□□□□ -1.41
VPS41-213ENST00000485955 GTF2F1P35269 517 aaKnown RBP eCLIP6.22□□□□□ -1.41
VPS41-213ENST00000485955 LSAMPQ13449 338 aa6.22□□□□□ -1.41
VPS41-213ENST00000485955 B3GNT8Q7Z7M8 397 aa6.22□□□□□ -1.41
VPS41-213ENST00000485955 ADGRG2Q8IZP9 1017 aa6.22□□□□□ -1.41
VPS41-213ENST00000485955 TMEM169Q96HH4 297 aa6.22□□□□□ -1.41
VPS41-213ENST00000485955 NOX5Q96PH1 765 aa6.22□□□□□ -1.41
VPS41-213ENST00000485955 PARD6AQ9NPB6 346 aa6.22□□□□□ -1.41
VPS41-213ENST00000485955 PPP1R1BQ9UD71 204 aaPredicted RBP6.22□□□□□ -1.41
VPS41-213ENST00000485955 PALD1Q9ULE6 856 aa6.22□□□□□ -1.41
VPS41-213ENST00000485955 FAN1Q9Y2M0 1017 aa6.22□□□□□ -1.41
VPS41-213ENST00000485955 BLACEA4D250 179 aa6.21□□□□□ -1.42
VPS41-213ENST00000485955 CCDC85CA6NKD9 419 aa6.21□□□□□ -1.42
VPS41-213ENST00000485955 MYO1BO43795 1136 aa6.21□□□□□ -1.42
VPS41-213ENST00000485955 GTF2A2P52657 109 aa6.21□□□□□ -1.42
VPS41-213ENST00000485955 HTRA3P83110 453 aa6.21□□□□□ -1.42
VPS41-213ENST00000485955 CACNB2Q08289 660 aaPredicted RBP6.21□□□□□ -1.42
VPS41-213ENST00000485955 NTRK3Q16288 839 aa6.21□□□□□ -1.42
VPS41-213ENST00000485955 MROH9Q5TGP6 573 aa6.21□□□□□ -1.42
VPS41-213ENST00000485955 USP53Q70EK8 1073 aa6.21□□□□□ -1.42
VPS41-213ENST00000485955 DCP2Q8IU60 420 aaKnown RBP6.21□□□□□ -1.42
VPS41-213ENST00000485955 RIOX2Q8IUF8 465 aa6.21□□□□□ -1.42
VPS41-213ENST00000485955 FAM26EQ8N5C1 309 aa6.21□□□□□ -1.42
VPS41-213ENST00000485955 LINC01356Q8N9X3 169 aa6.21□□□□□ -1.42
VPS41-213ENST00000485955 SMARCC2Q8TAQ2 1214 aa6.21□□□□□ -1.42
VPS41-213ENST00000485955 CPA5Q8WXQ8 436 aa6.21□□□□□ -1.42
VPS41-213ENST00000485955 CHAMP1Q96JM3 812 aa6.21□□□□□ -1.42
VPS41-213ENST00000485955 C20orf173Q96LM9 149 aa6.21□□□□□ -1.42
VPS41-213ENST00000485955 AARSD1Q9BTE6 412 aaKnown RBP6.21□□□□□ -1.42
VPS41-213ENST00000485955 A0A1B0GTL3 188 aa6.2□□□□□ -1.42
VPS41-213ENST00000485955 IQCA1LA6NCM1 817 aa6.2□□□□□ -1.42
VPS41-213ENST00000485955 KRTAP9-7A8MTY7 169 aa6.2□□□□□ -1.42
VPS41-213ENST00000485955 PDPK1O15530 556 aa6.2□□□□□ -1.42
VPS41-213ENST00000485955 FGFR1P11362 822 aa6.2□□□□□ -1.42
VPS41-213ENST00000485955 PABPC1P11940 636 aaKnown RBP6.2□□□□□ -1.42
VPS41-213ENST00000485955 HOXA5P20719 270 aa6.2□□□□□ -1.42
VPS41-213ENST00000485955 SLC6A11P48066 632 aa6.2□□□□□ -1.42
VPS41-213ENST00000485955 VWA3BQ502W6 1294 aa6.2□□□□□ -1.42
VPS41-213ENST00000485955 KCNT2Q6UVM3 1135 aa6.2□□□□□ -1.42
VPS41-213ENST00000485955 NSMFQ6X4W1 530 aa6.2□□□□□ -1.42
VPS41-213ENST00000485955 MILR1Q7Z6M3 343 aa6.2□□□□□ -1.42
VPS41-213ENST00000485955 SYT8Q8NBV8 401 aa6.2□□□□□ -1.42
VPS41-213ENST00000485955 ZNF526Q8TF50 670 aaPredicted RBP6.2□□□□□ -1.42
VPS41-213ENST00000485955 SEC14L1Q92503 715 aa6.2□□□□□ -1.42
VPS41-213ENST00000485955 DDX11Q96FC9 970 aa6.2□□□□□ -1.42
VPS41-213ENST00000485955 AP5M1Q9H0R1 490 aa6.2□□□□□ -1.42
VPS41-213ENST00000485955 ZCCHC4Q9H5U6 513 aa6.2□□□□□ -1.42
VPS41-213ENST00000485955 CLDND1Q9NY35 253 aa6.2□□□□□ -1.42
VPS41-213ENST00000485955 PFDN2Q9UHV9 154 aa6.2□□□□□ -1.42
VPS41-213ENST00000485955 PMF1-BGLAPU3KQ54 211 aa6.2□□□□□ -1.42
VPS41-213ENST00000485955 H7BY64 318 aa6.19□□□□□ -1.42
VPS41-213ENST00000485955 U2SURPO15042 1029 aaKnown RBP6.19□□□□□ -1.42
VPS41-213ENST00000485955 ADCY3O60266 1144 aa6.19□□□□□ -1.42
VPS41-213ENST00000485955 C8BP07358 591 aa6.19□□□□□ -1.42
VPS41-213ENST00000485955 DLX2Q07687 328 aaPredicted RBP6.19□□□□□ -1.42
VPS41-213ENST00000485955 RBL2Q08999 1139 aa6.19□□□□□ -1.42
VPS41-213ENST00000485955 SAPCD2Q86UD0 394 aa6.19□□□□□ -1.42
VPS41-213ENST00000485955 NLGN1Q8N2Q7 840 aa6.19□□□□□ -1.42
VPS41-213ENST00000485955 PHF20Q9BVI0 1012 aa6.19□□□□□ -1.42
VPS41-213ENST00000485955 SPATA9Q9BWV2 254 aa6.19□□□□□ -1.42
VPS41-213ENST00000485955 JAM3Q9BX67 310 aa6.19□□□□□ -1.42
VPS41-213ENST00000485955 CCDC113Q9H0I3 377 aa6.19□□□□□ -1.42
VPS41-213ENST00000485955 XYLT2Q9H1B5 865 aa6.19□□□□□ -1.42
VPS41-213ENST00000485955 GPR27Q9NS67 375 aa6.19□□□□□ -1.42
VPS41-213ENST00000485955 PPARGC1AQ9UBK2 798 aaKnown RBP6.19□□□□□ -1.42
VPS41-213ENST00000485955 TRAV20A0A0B4J274 112 aa6.18□□□□□ -1.42
VPS41-213ENST00000485955 DIAPH1O60610 1272 aaKnown RBP6.18□□□□□ -1.42
VPS41-213ENST00000485955 CAP1Q01518 475 aa6.18□□□□□ -1.42
VPS41-213ENST00000485955 RASGRF1Q13972 1273 aa6.18□□□□□ -1.42
VPS41-213ENST00000485955 FOXB2Q5VYV0 432 aa6.18□□□□□ -1.42
VPS41-213ENST00000485955 MIB1Q86YT6 1006 aa6.18□□□□□ -1.42
VPS41-213ENST00000485955 LRRC47Q8N1G4 583 aaKnown RBP6.18□□□□□ -1.42
VPS41-213ENST00000485955 FEZF2Q8TBJ5 459 aa6.18□□□□□ -1.42
VPS41-213ENST00000485955 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.18□□□□□ -1.42
VPS41-213ENST00000485955 ZNF669Q96BR6 464 aaPredicted RBP6.18□□□□□ -1.42
VPS41-213ENST00000485955 GORASP1Q9BQQ3 440 aa6.18□□□□□ -1.42
VPS41-213ENST00000485955 SPATA6Q9NWH7 488 aaPredicted RBP6.18□□□□□ -1.42
VPS41-213ENST00000485955 COA3Q9Y2R0 106 aaPredicted RBP6.18□□□□□ -1.42
VPS41-213ENST00000485955 ASXL2Q76L83 1435 aa6.17□□□□□ -1.42
VPS41-213ENST00000485955 FAM221BA6H8Z2 402 aa6.17□□□□□ -1.42
VPS41-213ENST00000485955 OTOL1A6NHN0 477 aaPredicted RBP6.17□□□□□ -1.42
VPS41-213ENST00000485955 HGSO14964 777 aaPredicted RBP6.17□□□□□ -1.42
VPS41-213ENST00000485955 TADA3O75528 432 aa6.17□□□□□ -1.42
VPS41-213ENST00000485955 SERINC3Q13530 473 aa6.17□□□□□ -1.42
VPS41-213ENST00000485955 NBPF6Q5VWK0 638 aa6.17□□□□□ -1.42
VPS41-213ENST00000485955 LILRA6Q6PI73 481 aa6.17□□□□□ -1.42
VPS41-213ENST00000485955 CD300LDQ6UXZ3 194 aa6.17□□□□□ -1.42
VPS41-213ENST00000485955 ETV3LQ6ZN32 361 aa6.17□□□□□ -1.42
VPS41-213ENST00000485955 STK32CQ86UX6 486 aa6.17□□□□□ -1.42
VPS41-213ENST00000485955 ZDHHC14Q8IZN3 488 aa6.17□□□□□ -1.42
VPS41-213ENST00000485955 ARRDC4Q8NCT1 418 aa6.17□□□□□ -1.42
VPS41-213ENST00000485955 DCAF4Q8WV16 495 aa6.17□□□□□ -1.42
VPS41-213ENST00000485955 NBPF4Q96M43 638 aa6.17□□□□□ -1.42
VPS41-213ENST00000485955 SIRPGQ9P1W8 387 aa6.17□□□□□ -1.42
VPS41-213ENST00000485955 A0A0G2JLL6 359 aaPredicted RBP6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 100.3 ms