RNA–Protein interactions for RNA: ENST00000484305.1

HDAC1-209, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-209ENST00000484305 ITGA7Q13683 1181 aa14.9□□□□□ -0.02
HDAC1-209ENST00000484305 FAM126BQ8IXS8 530 aa14.9□□□□□ -0.02
HDAC1-209ENST00000484305 ZFP91Q96JP5 570 aaPredicted RBP14.9□□□□□ -0.02
HDAC1-209ENST00000484305 POLR3EQ9NVU0 708 aa14.9□□□□□ -0.02
HDAC1-209ENST00000484305 SZT2Q5T011 3432 aa14.9□□□□□ -0.02
HDAC1-209ENST00000484305 SCN10AQ9Y5Y9 1956 aa14.89□□□□□ -0.03
HDAC1-209ENST00000484305 KLF18A0A0U1RQI7 1052 aa14.89□□□□□ -0.03
HDAC1-209ENST00000484305 A6NJR5 290 aa14.89□□□□□ -0.03
HDAC1-209ENST00000484305 ZBTB43O43298 467 aa14.89□□□□□ -0.03
HDAC1-209ENST00000484305 CD4P01730 458 aa14.89□□□□□ -0.03
HDAC1-209ENST00000484305 RAG1P15918 1043 aa14.89□□□□□ -0.03
HDAC1-209ENST00000484305 USP17L6PQ6QN14 398 aa14.89□□□□□ -0.03
HDAC1-209ENST00000484305 VSIG10LQ86VR7 867 aa14.89□□□□□ -0.03
HDAC1-209ENST00000484305 LRCH3Q96II8 777 aa14.89□□□□□ -0.03
HDAC1-209ENST00000484305 DDX41Q9UJV9 622 aaKnown RBP14.89□□□□□ -0.03
HDAC1-209ENST00000484305 TBX21Q9UL17 535 aa14.89□□□□□ -0.03
HDAC1-209ENST00000484305 MEIS2O14770 477 aa14.88□□□□□ -0.03
HDAC1-209ENST00000484305 GH1P01241 217 aa14.88□□□□□ -0.03
HDAC1-209ENST00000484305 ARHGAP1Q07960 439 aa14.88□□□□□ -0.03
HDAC1-209ENST00000484305 APOBRQ0VD83 1088 aa14.88□□□□□ -0.03
HDAC1-209ENST00000484305 FUT2Q10981 343 aa14.88□□□□□ -0.03
HDAC1-209ENST00000484305 BRDTQ58F21 947 aaPredicted RBP14.88□□□□□ -0.03
HDAC1-209ENST00000484305 BLOC1S2Q6QNY1 142 aa14.88□□□□□ -0.03
HDAC1-209ENST00000484305 Q6ZUG5 572 aa14.88□□□□□ -0.03
HDAC1-209ENST00000484305 AFG1LQ8WV93 481 aa14.88□□□□□ -0.03
HDAC1-209ENST00000484305 USP26Q9BXU7 913 aa14.88□□□□□ -0.03
HDAC1-209ENST00000484305 FAM217BQ9NTX9 383 aaPredicted RBP14.88□□□□□ -0.03
HDAC1-209ENST00000484305 RBM28Q9NW13 759 aaKnown RBP14.88□□□□□ -0.03
HDAC1-209ENST00000484305 MRVI1Q9Y6F6 885 aa14.88□□□□□ -0.03
HDAC1-209ENST00000484305 CNTNAP5Q8WYK1 1306 aa14.88□□□□□ -0.03
HDAC1-209ENST00000484305 GOLGA8AA7E2F4 631 aa14.87□□□□□ -0.03
HDAC1-209ENST00000484305 GOLGA8BA8MQT2 603 aa14.87□□□□□ -0.03
HDAC1-209ENST00000484305 PIK3CDO00329 1044 aa14.87□□□□□ -0.03
HDAC1-209ENST00000484305 TLR3O15455 904 aaKnown RBP14.87□□□□□ -0.03
HDAC1-209ENST00000484305 TIMP1P01033 207 aa14.87□□□□□ -0.03
HDAC1-209ENST00000484305 RPS6KB1P23443 525 aa14.87□□□□□ -0.03
HDAC1-209ENST00000484305 CDC27P30260 824 aa14.87□□□□□ -0.03
HDAC1-209ENST00000484305 CCND2P30279 289 aa14.87□□□□□ -0.03
HDAC1-209ENST00000484305 FGD1P98174 961 aa14.87□□□□□ -0.03
HDAC1-209ENST00000484305 SHHQ15465 462 aa14.87□□□□□ -0.03
HDAC1-209ENST00000484305 RTN1Q16799 776 aa14.87□□□□□ -0.03
HDAC1-209ENST00000484305 LRIT3Q3SXY7 679 aa14.87□□□□□ -0.03
HDAC1-209ENST00000484305 C9orf50Q5SZB4 431 aa14.87□□□□□ -0.03
HDAC1-209ENST00000484305 SMARCC2Q8TAQ2 1214 aa14.87□□□□□ -0.03
HDAC1-209ENST00000484305 PPP1R13LQ8WUF5 828 aa14.87□□□□□ -0.03
HDAC1-209ENST00000484305 GPKOWQ92917 476 aaPredicted RBP eCLIP14.87□□□□□ -0.032e-12■□□□□ 9.6
HDAC1-209ENST00000484305 BRF1Q92994 677 aa14.87□□□□□ -0.03
HDAC1-209ENST00000484305 CUL5Q93034 780 aa14.87□□□□□ -0.03
HDAC1-209ENST00000484305 MTG1Q9BT17 334 aaPredicted RBP14.87□□□□□ -0.03
HDAC1-209ENST00000484305 TRPV6Q9H1D0 765 aa14.87□□□□□ -0.03
HDAC1-209ENST00000484305 NAP1L2Q9ULW6 460 aaPredicted RBP14.87□□□□□ -0.03
HDAC1-209ENST00000484305 FRMPD4Q14CM0 1322 aa14.87□□□□□ -0.03
HDAC1-209ENST00000484305 DOCK5Q9H7D0 1870 aa14.86□□□□□ -0.03
HDAC1-209ENST00000484305 EPB41L2O43491 1005 aaKnown RBP14.86□□□□□ -0.03
HDAC1-209ENST00000484305 B4GALT4O60513 344 aa14.86□□□□□ -0.03
HDAC1-209ENST00000484305 KPNA6O60684 536 aa14.86□□□□□ -0.03
HDAC1-209ENST00000484305 MMP3P08254 477 aa14.86□□□□□ -0.03
HDAC1-209ENST00000484305 CASTP20810 708 aaKnown RBP14.86□□□□□ -0.03
HDAC1-209ENST00000484305 PSMA5P28066 241 aa14.86□□□□□ -0.03
HDAC1-209ENST00000484305 EPHB4P54760 987 aa14.86□□□□□ -0.03
HDAC1-209ENST00000484305 MRPS9P82933 396 aaKnown RBP14.86□□□□□ -0.03
HDAC1-209ENST00000484305 SP2Q02086 613 aa14.86□□□□□ -0.03
HDAC1-209ENST00000484305 NBPF20Q3BBV1 942 aa14.86□□□□□ -0.03
HDAC1-209ENST00000484305 HEATR3Q7Z4Q2 680 aa14.86□□□□□ -0.03
HDAC1-209ENST00000484305 SEZ6LQ9BYH1 1024 aa14.86□□□□□ -0.03
HDAC1-209ENST00000484305 ALDH8A1Q9H2A2 487 aaPredicted RBP14.86□□□□□ -0.03
HDAC1-209ENST00000484305 PSTPIP2Q9H939 334 aa14.86□□□□□ -0.03
HDAC1-209ENST00000484305 V9GY48 417 aaPredicted RBP14.86□□□□□ -0.03
HDAC1-209ENST00000484305 SORBS3O60504 671 aa14.85□□□□□ -0.03
HDAC1-209ENST00000484305 ADD1P35611 737 aaKnown RBP14.85□□□□□ -0.03
HDAC1-209ENST00000484305 RCAN1P53805 252 aa14.85□□□□□ -0.03
HDAC1-209ENST00000484305 FPGSQ05932 587 aa14.85□□□□□ -0.03
HDAC1-209ENST00000484305 WWC2Q6AWC2 1192 aa14.85□□□□□ -0.03
HDAC1-209ENST00000484305 FBXL16Q8N461 479 aa14.85□□□□□ -0.03
HDAC1-209ENST00000484305 EMID1Q96A84 441 aaPredicted RBP14.85□□□□□ -0.03
HDAC1-209ENST00000484305 AGXT2Q9BYV1 514 aa14.85□□□□□ -0.03
HDAC1-209ENST00000484305 PPP1R12CQ9BZL4 782 aa14.85□□□□□ -0.03
HDAC1-209ENST00000484305 RTEL1Q9NZ71 1219 aa14.85□□□□□ -0.03
HDAC1-209ENST00000484305 TGFB3P10600 412 aa14.84□□□□□ -0.03
HDAC1-209ENST00000484305 CYP2C18P33260 490 aa14.84□□□□□ -0.03
HDAC1-209ENST00000484305 METAP2P50579 478 aaKnown RBP eCLIP14.84□□□□□ -0.03
HDAC1-209ENST00000484305 LAMC2Q13753 1193 aa14.84□□□□□ -0.03
HDAC1-209ENST00000484305 UBE2SQ16763 222 aa14.84□□□□□ -0.03
HDAC1-209ENST00000484305 MYSM1Q5VVJ2 828 aa14.84□□□□□ -0.03
HDAC1-209ENST00000484305 MFSD5Q6N075 450 aa14.84□□□□□ -0.03
HDAC1-209ENST00000484305 TYW1BQ6NUM6 668 aa14.84□□□□□ -0.03
HDAC1-209ENST00000484305 KCNV1Q6PIU1 500 aa14.84□□□□□ -0.03
HDAC1-209ENST00000484305 DHX37Q8IY37 1157 aaKnown RBP14.84□□□□□ -0.03
HDAC1-209ENST00000484305 INPP4AQ96PE3 977 aaPredicted RBP14.84□□□□□ -0.03
HDAC1-209ENST00000484305 BCAS3Q9H6U6 928 aa14.84□□□□□ -0.03
HDAC1-209ENST00000484305 ZSWIM6Q9HCJ5 1215 aa14.84□□□□□ -0.03
HDAC1-209ENST00000484305 TRMT13Q9NUP7 481 aaKnown RBP14.84□□□□□ -0.03
HDAC1-209ENST00000484305 UMODL1Q5DID0 1318 aa14.84□□□□□ -0.03
HDAC1-209ENST00000484305 STAM2O75886 525 aa14.83□□□□□ -0.04
HDAC1-209ENST00000484305 GGPS1O95749 300 aa14.83□□□□□ -0.04
HDAC1-209ENST00000484305 CSF2RAP15509 400 aa14.83□□□□□ -0.04
HDAC1-209ENST00000484305 UBA1P22314 1058 aaKnown RBP14.83□□□□□ -0.04
HDAC1-209ENST00000484305 CHMP4BP1P59074 171 aa14.83□□□□□ -0.04
HDAC1-209ENST00000484305 DGKDQ16760 1214 aa14.83□□□□□ -0.04
HDAC1-209ENST00000484305 FAM47CQ5HY64 1035 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms