RNA–Protein interactions for RNA: ENST00000483851.6

SHOX2-204, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SHOX2, Length 1,866 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-204ENST00000483851 NCAPHQ15003 741 aa29.49■■■□□ 2.31
SHOX2-204ENST00000483851 HYIQ5T013 277 aa29.49■■■□□ 2.31
SHOX2-204ENST00000483851 ARHGAP30Q7Z6I6 1101 aaPredicted RBP29.49■■■□□ 2.31
SHOX2-204ENST00000483851 CDK5RAP3Q96JB5 506 aa29.49■■■□□ 2.31
SHOX2-204ENST00000483851 NAP1L5Q96NT1 182 aaPredicted RBP29.49■■■□□ 2.31
SHOX2-204ENST00000483851 GTPBP4Q9BZE4 634 aaKnown RBP29.49■■■□□ 2.31
SHOX2-204ENST00000483851 RAVER2Q9HCJ3 691 aaKnown RBP29.49■■■□□ 2.31
SHOX2-204ENST00000483851 KDM3AQ9Y4C1 1321 aa29.49■■■□□ 2.31
SHOX2-204ENST00000483851 FAM86B1E9PN63 330 aa29.48■■■□□ 2.31
SHOX2-204ENST00000483851 FAM86B2P0C5J1 330 aa29.48■■■□□ 2.31
SHOX2-204ENST00000483851 ANKRD13AQ8IZ07 590 aa29.48■■■□□ 2.31
SHOX2-204ENST00000483851 CPXCR1Q8N123 301 aa29.48■■■□□ 2.31
SHOX2-204ENST00000483851 NT5C3AQ9H0P0 336 aa29.48■■■□□ 2.31
SHOX2-204ENST00000483851 HOXC10Q9NYD6 342 aa29.48■■■□□ 2.31
SHOX2-204ENST00000483851 POTEMA6NI47 508 aa29.48■■■□□ 2.31
SHOX2-204ENST00000483851 TPM3P06753 285 aa29.48■■■□□ 2.31
SHOX2-204ENST00000483851 PPATQ06203 517 aa29.48■■■□□ 2.31
SHOX2-204ENST00000483851 GRB10Q13322 594 aa29.48■■■□□ 2.31
SHOX2-204ENST00000483851 KCNB1Q14721 858 aa29.48■■■□□ 2.31
SHOX2-204ENST00000483851 SNX29Q8TEQ0 813 aa29.48■■■□□ 2.31
SHOX2-204ENST00000483851 ZNF830Q96NB3 372 aaPredicted RBP29.48■■■□□ 2.31
SHOX2-204ENST00000483851 ALAS1P13196 640 aa29.47■■■□□ 2.31
SHOX2-204ENST00000483851 ZNF75DP51815 510 aa29.47■■■□□ 2.31
SHOX2-204ENST00000483851 CUL4BQ13620 913 aa29.47■■■□□ 2.31
SHOX2-204ENST00000483851 ATG4CQ96DT6 458 aa29.47■■■□□ 2.31
SHOX2-204ENST00000483851 TRIM5Q9C035 493 aa29.47■■■□□ 2.31
SHOX2-204ENST00000483851 LRRC27Q9C0I9 530 aa29.47■■■□□ 2.31
SHOX2-204ENST00000483851 RPTORQ8N122 1335 aa29.46■■■□□ 2.31
SHOX2-204ENST00000483851 PTPRFP10586 1907 aa29.46■■■□□ 2.31
SHOX2-204ENST00000483851 IGLV3-22A0A075B6J6 115 aa29.46■■■□□ 2.31
SHOX2-204ENST00000483851 RPN1P04843 607 aaKnown RBP29.46■■■□□ 2.31
SHOX2-204ENST00000483851 TMEM119Q4V9L6 283 aa29.46■■■□□ 2.31
SHOX2-204ENST00000483851 REPS2Q8NFH8 660 aa29.46■■■□□ 2.31
SHOX2-204ENST00000483851 ENOX1Q8TC92 643 aaKnown RBP29.46■■■□□ 2.31
SHOX2-204ENST00000483851 C7orf25Q9BPX7 421 aa29.46■■■□□ 2.31
SHOX2-204ENST00000483851 STAMQ92783 540 aa29.46■■■□□ 2.31
SHOX2-204ENST00000483851 PNMA5Q96PV4 448 aa29.46■■■□□ 2.31
SHOX2-204ENST00000483851 CDC25BP30305 580 aa29.45■■■□□ 2.31
SHOX2-204ENST00000483851 SETQ01105 290 aaPredicted RBP29.45■■■□□ 2.31
SHOX2-204ENST00000483851 TKFCQ3LXA3 575 aa29.45■■■□□ 2.31
SHOX2-204ENST00000483851 ERO1BQ86YB8 467 aa29.45■■■□□ 2.31
SHOX2-204ENST00000483851 KCTD17Q8N5Z5 321 aa29.45■■■□□ 2.31
SHOX2-204ENST00000483851 MRFAP1L1Q96HT8 127 aa29.45■■■□□ 2.31
SHOX2-204ENST00000483851 BLZF1Q9H2G9 400 aa29.45■■■□□ 2.31
SHOX2-204ENST00000483851 NFIBO00712 420 aa29.44■■■□□ 2.3
SHOX2-204ENST00000483851 ZNF658Q5TYW1 1059 aaPredicted RBP29.44■■■□□ 2.3
SHOX2-204ENST00000483851 HAUS3Q68CZ6 603 aa29.44■■■□□ 2.3
SHOX2-204ENST00000483851 ERMNQ8TAM6 284 aa29.44■■■□□ 2.3
SHOX2-204ENST00000483851 KCNF1Q9H3M0 494 aa29.44■■■□□ 2.3
SHOX2-204ENST00000483851 FRMPD4Q14CM0 1322 aa29.44■■■□□ 2.3
SHOX2-204ENST00000483851 MSH4O15457 936 aa29.44■■■□□ 2.3
SHOX2-204ENST00000483851 CASP1P29466 404 aa29.44■■■□□ 2.3
SHOX2-204ENST00000483851 TERF1P54274 439 aa29.44■■■□□ 2.3
SHOX2-204ENST00000483851 CEP55Q53EZ4 464 aa29.44■■■□□ 2.3
SHOX2-204ENST00000483851 SV2BQ7L1I2 683 aa29.44■■■□□ 2.3
SHOX2-204ENST00000483851 CCDC47Q96A33 483 aaKnown RBP29.44■■■□□ 2.3
SHOX2-204ENST00000483851 PLIN2Q99541 437 aa29.44■■■□□ 2.3
SHOX2-204ENST00000483851 CXCL11O14625 94 aa29.43■■■□□ 2.3
SHOX2-204ENST00000483851 HOXA7P31268 230 aaPredicted RBP29.43■■■□□ 2.3
SHOX2-204ENST00000483851 SPIRE1Q08AE8 756 aa29.43■■■□□ 2.3
SHOX2-204ENST00000483851 CNNM4Q6P4Q7 775 aa29.43■■■□□ 2.3
SHOX2-204ENST00000483851 NIPA1Q7RTP0 329 aa29.43■■■□□ 2.3
SHOX2-204ENST00000483851 PROCA1Q8NCQ7 364 aaPredicted RBP29.43■■■□□ 2.3
SHOX2-204ENST00000483851 LRRC15Q8TF66 581 aa29.43■■■□□ 2.3
SHOX2-204ENST00000483851 LARP4BQ92615 738 aaKnown RBP29.43■■■□□ 2.3
SHOX2-204ENST00000483851 TRERF1Q96PN7 1200 aa29.43■■■□□ 2.3
SHOX2-204ENST00000483851 TRIM9Q9C026 710 aa29.43■■■□□ 2.3
SHOX2-204ENST00000483851 UNCXA6NJT0 531 aa29.42■■■□□ 2.3
SHOX2-204ENST00000483851 GOLGA6L6A8MZA4 724 aa29.42■■■□□ 2.3
SHOX2-204ENST00000483851 POTECB2RU33 542 aa29.42■■■□□ 2.3
SHOX2-204ENST00000483851 DLK2Q6UY11 383 aa29.42■■■□□ 2.3
SHOX2-204ENST00000483851 BLOC1S4Q9NUP1 217 aa29.42■■■□□ 2.3
SHOX2-204ENST00000483851 COL11A1P12107 1806 aaPredicted RBP29.42■■■□□ 2.3
SHOX2-204ENST00000483851 LOC285556D6RIA3 1793 aa29.42■■■□□ 2.3
SHOX2-204ENST00000483851 SPDYE5A6NIY4 337 aa29.42■■■□□ 2.3
SHOX2-204ENST00000483851 MEIS1O00470 390 aa29.42■■■□□ 2.3
SHOX2-204ENST00000483851 BCRP11274 1271 aa29.42■■■□□ 2.3
SHOX2-204ENST00000483851 ARMC9Q7Z3E5 817 aa29.42■■■□□ 2.3
SHOX2-204ENST00000483851 SYTL5Q8TDW5 730 aaPredicted RBP29.42■■■□□ 2.3
SHOX2-204ENST00000483851 RAD54LQ92698 747 aa29.42■■■□□ 2.3
SHOX2-204ENST00000483851 ZBTB4Q9P1Z0 1013 aaPredicted RBP29.42■■■□□ 2.3
SHOX2-204ENST00000483851 ZNF214Q9UL59 606 aaPredicted RBP29.42■■■□□ 2.3
SHOX2-204ENST00000483851 UTRNP46939 3433 aa29.41■■■□□ 2.3
SHOX2-204ENST00000483851 RHOBTB3O94955 611 aa29.41■■■□□ 2.3
SHOX2-204ENST00000483851 MUM1L1Q5H9M0 696 aa29.41■■■□□ 2.3
SHOX2-204ENST00000483851 TEX13BQ9BXU2 312 aa29.41■■■□□ 2.3
SHOX2-204ENST00000483851 CCT6AP40227 531 aaKnown RBP29.4■■■□□ 2.3
SHOX2-204ENST00000483851 EAPPQ56P03 285 aaPredicted RBP29.4■■■□□ 2.3
SHOX2-204ENST00000483851 SLC5A5Q92911 643 aa29.4■■■□□ 2.3
SHOX2-204ENST00000483851 SPTLC3Q9NUV7 552 aa29.4■■■□□ 2.3
SHOX2-204ENST00000483851 A0A0G2JLL6 359 aaPredicted RBP29.4■■■□□ 2.3
SHOX2-204ENST00000483851 KLRC4O43908 158 aa29.4■■■□□ 2.3
SHOX2-204ENST00000483851 PCNX4Q63HM2 1172 aa29.4■■■□□ 2.3
SHOX2-204ENST00000483851 PRRT2Q7Z6L0 340 aaPredicted RBP29.4■■■□□ 2.3
SHOX2-204ENST00000483851 SPC24Q8NBT2 197 aa29.4■■■□□ 2.3
SHOX2-204ENST00000483851 NUDT12Q9BQG2 462 aa29.4■■■□□ 2.3
SHOX2-204ENST00000483851 RNF146Q9NTX7 359 aa29.4■■■□□ 2.3
SHOX2-204ENST00000483851 SPDYE16A6NNV3 312 aaPredicted RBP29.39■■■□□ 2.3
SHOX2-204ENST00000483851 PPP1R3GB7ZBB8 358 aa29.39■■■□□ 2.3
SHOX2-204ENST00000483851 RPS6P62753 249 aaKnown RBP29.39■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms