RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 SH3GLB2Q9NR46 395 aa14.7□□□□□ -0.06
USP40-214ENST00000483519 EHD2Q9NZN4 543 aa14.7□□□□□ -0.06
USP40-214ENST00000483519 CCDC194A0A1B0GVG4 234 aa14.7□□□□□ -0.06
USP40-214ENST00000483519 PP2D1A8MPX8 630 aa14.7□□□□□ -0.06
USP40-214ENST00000483519 NCK2O43639 380 aa14.7□□□□□ -0.06
USP40-214ENST00000483519 FGRP09769 529 aa14.7□□□□□ -0.06
USP40-214ENST00000483519 MDH1P40925 334 aaKnown RBP14.7□□□□□ -0.06
USP40-214ENST00000483519 SMTNP53814 917 aa14.7□□□□□ -0.06
USP40-214ENST00000483519 ACTN3Q08043 901 aaPredicted RBP14.7□□□□□ -0.06
USP40-214ENST00000483519 NLRP14Q86W24 1093 aa14.7□□□□□ -0.06
USP40-214ENST00000483519 ARFGAP2Q8N6H7 521 aa14.7□□□□□ -0.06
USP40-214ENST00000483519 MYCBPAPQ8TBZ2 947 aa14.7□□□□□ -0.06
USP40-214ENST00000483519 EPB41L5Q9HCM4 733 aa14.7□□□□□ -0.06
USP40-214ENST00000483519 PCDHA4Q9UN74 947 aa14.7□□□□□ -0.06
USP40-214ENST00000483519 GOLGA6L10A6NI86 522 aa14.69□□□□□ -0.06
USP40-214ENST00000483519 SNAP23O00161 211 aa14.69□□□□□ -0.06
USP40-214ENST00000483519 KIF1CO43896 1103 aaKnown RBP14.69□□□□□ -0.06
USP40-214ENST00000483519 FAM107AO95990 144 aa14.69□□□□□ -0.06
USP40-214ENST00000483519 GLI1P08151 1106 aa14.69□□□□□ -0.06
USP40-214ENST00000483519 KIF5BP33176 963 aa14.69□□□□□ -0.06
USP40-214ENST00000483519 CARSP49589 748 aaKnown RBP14.69□□□□□ -0.06
USP40-214ENST00000483519 GUCY2DQ02846 1103 aa14.69□□□□□ -0.06
USP40-214ENST00000483519 VWA3BQ502W6 1294 aa14.69□□□□□ -0.06
USP40-214ENST00000483519 ADGRA1Q86SQ6 560 aa14.69□□□□□ -0.06
USP40-214ENST00000483519 IFT81Q8WYA0 676 aa14.69□□□□□ -0.06
USP40-214ENST00000483519 CAMKK2Q96RR4 588 aa14.69□□□□□ -0.06
USP40-214ENST00000483519 CCT8L2Q96SF2 557 aa14.69□□□□□ -0.06
USP40-214ENST00000483519 MYH10P35580 1976 aa14.69□□□□□ -0.06
USP40-214ENST00000483519 ERVV-1B6SEH8 477 aa14.69□□□□□ -0.06
USP40-214ENST00000483519 ASIC1P78348 528 aa14.69□□□□□ -0.06
USP40-214ENST00000483519 KLHDC7AQ5VTJ3 777 aa14.69□□□□□ -0.06
USP40-214ENST00000483519 CNNM4Q6P4Q7 775 aa14.69□□□□□ -0.06
USP40-214ENST00000483519 GIMAP7Q8NHV1 300 aa14.69□□□□□ -0.06
USP40-214ENST00000483519 PLIN2Q99541 437 aa14.69□□□□□ -0.06
USP40-214ENST00000483519 TRIM9Q9C026 710 aa14.69□□□□□ -0.06
USP40-214ENST00000483519 FAM207AQ9NSI2 230 aaPredicted RBP14.69□□□□□ -0.06
USP40-214ENST00000483519 SIK3Q9Y2K2 1263 aa14.69□□□□□ -0.06
USP40-214ENST00000483519 GRID2IPA4D2P6 1211 aa14.68□□□□□ -0.06
USP40-214ENST00000483519 SMIM22K7EJ46 135 aa14.68□□□□□ -0.06
USP40-214ENST00000483519 PRPHP41219 470 aa14.68□□□□□ -0.06
USP40-214ENST00000483519 CDR1P51861 262 aa14.68□□□□□ -0.06
USP40-214ENST00000483519 EN1Q05925 392 aaPredicted RBP14.68□□□□□ -0.06
USP40-214ENST00000483519 CCDC40Q4G0X9 1142 aa14.68□□□□□ -0.06
USP40-214ENST00000483519 COBLL1Q53SF7 1204 aa14.68□□□□□ -0.06
USP40-214ENST00000483519 NDST4Q9H3R1 872 aa14.68□□□□□ -0.06
USP40-214ENST00000483519 LUC7LQ9NQ29 371 aaKnown RBP14.68□□□□□ -0.06
USP40-214ENST00000483519 KLC4Q9NSK0 619 aa14.68□□□□□ -0.06
USP40-214ENST00000483519 TCP11L1Q9NUJ3 509 aa14.68□□□□□ -0.06
USP40-214ENST00000483519 DONSONQ9NYP3 566 aa14.68□□□□□ -0.06
USP40-214ENST00000483519 FAM205AQ6ZU69 1335 aa14.68□□□□□ -0.06
USP40-214ENST00000483519 LOC102724428A0A0B4J2F2 783 aa14.68□□□□□ -0.06
USP40-214ENST00000483519 GOLGA6L7A0A1B0GV03 622 aa14.68□□□□□ -0.06
USP40-214ENST00000483519 FGFR1OPO95684 399 aaKnown RBP14.68□□□□□ -0.06
USP40-214ENST00000483519 FAM153BP0C7A2 387 aa14.68□□□□□ -0.06
USP40-214ENST00000483519 SIK1P57059 783 aa14.68□□□□□ -0.06
USP40-214ENST00000483519 AMPD3Q01432 767 aa14.68□□□□□ -0.06
USP40-214ENST00000483519 STK4Q13043 487 aa14.68□□□□□ -0.06
USP40-214ENST00000483519 NEDD9Q14511 834 aa14.68□□□□□ -0.06
USP40-214ENST00000483519 TXNRD1Q16881 649 aa14.68□□□□□ -0.06
USP40-214ENST00000483519 FAM153CQ494X1 144 aa14.68□□□□□ -0.06
USP40-214ENST00000483519 PPP4R3AQ6IN85 833 aa14.68□□□□□ -0.06
USP40-214ENST00000483519 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.68□□□□□ -0.06
USP40-214ENST00000483519 AK8Q96MA6 479 aa14.68□□□□□ -0.06
USP40-214ENST00000483519 C7orf25Q9BPX7 421 aa14.68□□□□□ -0.06
USP40-214ENST00000483519 RIOK1Q9BRS2 568 aaKnown RBP14.68□□□□□ -0.06
USP40-214ENST00000483519 MMRN2Q9H8L6 949 aa14.68□□□□□ -0.06
USP40-214ENST00000483519 ACTR5Q9H9F9 607 aaPredicted RBP14.68□□□□□ -0.06
USP40-214ENST00000483519 ABCF2Q9UG63 623 aa14.68□□□□□ -0.06
USP40-214ENST00000483519 FAM153AQ9UHL3 310 aa14.68□□□□□ -0.06
USP40-214ENST00000483519 CCNL1Q9UK58 526 aaPredicted RBP14.68□□□□□ -0.06
USP40-214ENST00000483519 ABCB11O95342 1321 aa14.68□□□□□ -0.06
USP40-214ENST00000483519 CYP2D7A0A087X1C5 515 aa14.67□□□□□ -0.06
USP40-214ENST00000483519 SSU72P8A0A1W2PR75 194 aa14.67□□□□□ -0.06
USP40-214ENST00000483519 LRRC53A6NM62 1247 aa14.67□□□□□ -0.06
USP40-214ENST00000483519 ADAMTS3O15072 1205 aa14.67□□□□□ -0.06
USP40-214ENST00000483519 MAN2A1Q16706 1144 aa14.67□□□□□ -0.06
USP40-214ENST00000483519 RRAGAQ7L523 313 aa14.67□□□□□ -0.06
USP40-214ENST00000483519 CCDC13Q8IYE1 715 aa14.67□□□□□ -0.06
USP40-214ENST00000483519 C3orf20Q8ND61 904 aa14.67□□□□□ -0.06
USP40-214ENST00000483519 PIK3R5Q8WYR1 880 aa14.67□□□□□ -0.06
USP40-214ENST00000483519 CEP83Q9Y592 693 aa14.67□□□□□ -0.06
USP40-214ENST00000483519 E7EVH7 732 aa14.67□□□□□ -0.06
USP40-214ENST00000483519 PLCG1P19174 1290 aa14.67□□□□□ -0.06
USP40-214ENST00000483519 GUCY2FP51841 1108 aa14.67□□□□□ -0.06
USP40-214ENST00000483519 HDLBPQ00341 1268 aaKnown RBP14.67□□□□□ -0.06
USP40-214ENST00000483519 ITGB3BPQ13352 177 aaPredicted RBP14.67□□□□□ -0.06
USP40-214ENST00000483519 DEFB132Q7Z7B7 95 aa14.67□□□□□ -0.06
USP40-214ENST00000483519 CABP7Q86V35 215 aa14.67□□□□□ -0.06
USP40-214ENST00000483519 ZKSCAN4Q969J2 545 aaPredicted RBP14.67□□□□□ -0.06
USP40-214ENST00000483519 MTMR8Q96EF0 704 aa14.67□□□□□ -0.06
USP40-214ENST00000483519 MS4A14Q96JA4 679 aa14.67□□□□□ -0.06
USP40-214ENST00000483519 TMEM60Q9H2L4 133 aa14.67□□□□□ -0.06
USP40-214ENST00000483519 COL5A3P25940 1745 aaPredicted RBP14.67□□□□□ -0.06
USP40-214ENST00000483519 MYH1P12882 1939 aa14.66□□□□□ -0.06
USP40-214ENST00000483519 BAZ2AQ9UIF9 1905 aaKnown RBP14.66□□□□□ -0.06
USP40-214ENST00000483519 ORC4O43929 436 aa14.66□□□□□ -0.06
USP40-214ENST00000483519 RASSF7Q02833 373 aa14.66□□□□□ -0.06
USP40-214ENST00000483519 IFT88Q13099 833 aa14.66□□□□□ -0.06
USP40-214ENST00000483519 CCDC121Q6ZUS5 278 aa14.66□□□□□ -0.06
USP40-214ENST00000483519 MAATS1Q7Z4T9 603 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms