RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 PTPRHQ9HD43 1115 aa5.12□□□□□ -1.59
VPS41-212ENST00000482217 MBNL3Q9NUK0 354 aaKnown RBP5.12□□□□□ -1.59
VPS41-212ENST00000482217 GPR55Q9Y2T6 319 aaPredicted RBP5.12□□□□□ -1.59
VPS41-212ENST00000482217 ZNF281Q9Y2X9 895 aa5.12□□□□□ -1.59
VPS41-212ENST00000482217 SH3BP1Q9Y3L3 701 aa5.12□□□□□ -1.59
VPS41-212ENST00000482217 PCDHA11Q9Y5I1 949 aa5.12□□□□□ -1.59
VPS41-212ENST00000482217 BACE2Q9Y5Z0 518 aa5.12□□□□□ -1.59
VPS41-212ENST00000482217 TRBV23-1A0A0A0MS06 115 aa5.11□□□□□ -1.59
VPS41-212ENST00000482217 C2orf71A6NGG8 1288 aa5.11□□□□□ -1.59
VPS41-212ENST00000482217 BTBD11A6QL63 1104 aa5.11□□□□□ -1.59
VPS41-212ENST00000482217 STXBP3O00186 592 aa5.11□□□□□ -1.59
VPS41-212ENST00000482217 DLX3O60479 287 aa5.11□□□□□ -1.59
VPS41-212ENST00000482217 CAND2O75155 1236 aa5.11□□□□□ -1.59
VPS41-212ENST00000482217 KRT18P05783 430 aaKnown RBP5.11□□□□□ -1.59
VPS41-212ENST00000482217 RNASE1P07998 156 aaKnown RBP5.11□□□□□ -1.59
VPS41-212ENST00000482217 SRGNP10124 158 aa5.11□□□□□ -1.59
VPS41-212ENST00000482217 VDRP11473 427 aa5.11□□□□□ -1.59
VPS41-212ENST00000482217 RRM1P23921 792 aa5.11□□□□□ -1.59
VPS41-212ENST00000482217 TEKQ02763 1124 aa5.11□□□□□ -1.59
VPS41-212ENST00000482217 ZP2Q05996 745 aa5.11□□□□□ -1.59
VPS41-212ENST00000482217 EGR3Q06889 387 aa5.11□□□□□ -1.59
VPS41-212ENST00000482217 TCEA2Q15560 299 aa5.11□□□□□ -1.59
VPS41-212ENST00000482217 INO80DQ53TQ3 878 aaPredicted RBP5.11□□□□□ -1.59
VPS41-212ENST00000482217 RTP2Q5QGT7 225 aa5.11□□□□□ -1.59
VPS41-212ENST00000482217 YOD1Q5VVQ6 348 aaPredicted RBP5.11□□□□□ -1.59
VPS41-212ENST00000482217 EEF1DP3Q658K8 133 aa5.11□□□□□ -1.59
VPS41-212ENST00000482217 PPP4R4Q6NUP7 873 aa5.11□□□□□ -1.59
VPS41-212ENST00000482217 CCDC174Q6PII3 467 aa5.11□□□□□ -1.59
VPS41-212ENST00000482217 RELTQ969Z4 430 aa5.11□□□□□ -1.59
VPS41-212ENST00000482217 SYTL4Q96C24 671 aaPredicted RBP5.11□□□□□ -1.59
VPS41-212ENST00000482217 RUNDC1Q96C34 613 aa5.11□□□□□ -1.59
VPS41-212ENST00000482217 CCDC120Q96HB5 630 aa5.11□□□□□ -1.59
VPS41-212ENST00000482217 EXOC2Q96KP1 924 aa5.11□□□□□ -1.59
VPS41-212ENST00000482217 RSPH9Q9H1X1 276 aaPredicted RBP5.11□□□□□ -1.59
VPS41-212ENST00000482217 MRPS23Q9Y3D9 190 aaKnown RBP5.11□□□□□ -1.59
VPS41-212ENST00000482217 TRBV23OR9-2A0A075B6M9 112 aa5.1□□□□□ -1.59
VPS41-212ENST00000482217 PAPLNO95428 1278 aa5.1□□□□□ -1.59
VPS41-212ENST00000482217 GSTM1P09488 218 aa5.1□□□□□ -1.59
VPS41-212ENST00000482217 IFNGR1P15260 489 aa5.1□□□□□ -1.59
VPS41-212ENST00000482217 CD96P40200 585 aa5.1□□□□□ -1.59
VPS41-212ENST00000482217 ECI1P42126 302 aa5.1□□□□□ -1.59
VPS41-212ENST00000482217 KCNJ6P48051 423 aa5.1□□□□□ -1.59
VPS41-212ENST00000482217 SEPHS1P49903 392 aa5.1□□□□□ -1.59
VPS41-212ENST00000482217 SCRN1Q12765 414 aa5.1□□□□□ -1.59
VPS41-212ENST00000482217 HDAC1Q13547 482 aaPredicted RBP5.1□□□□□ -1.59
VPS41-212ENST00000482217 BRD3Q15059 726 aa5.1□□□□□ -1.59
VPS41-212ENST00000482217 TMEM95Q3KNT9 176 aa5.1□□□□□ -1.59
VPS41-212ENST00000482217 FAM209AQ5JX71 171 aa5.1□□□□□ -1.59
VPS41-212ENST00000482217 SLC35F1Q5T1Q4 408 aa5.1□□□□□ -1.59
VPS41-212ENST00000482217 ACBD5Q5T8D3 534 aaPredicted RBP5.1□□□□□ -1.59
VPS41-212ENST00000482217 FOXB2Q5VYV0 432 aa5.1□□□□□ -1.59
VPS41-212ENST00000482217 CC2D1AQ6P1N0 951 aaPredicted RBP5.1□□□□□ -1.59
VPS41-212ENST00000482217 CASC1Q6TDU7 716 aa5.1□□□□□ -1.59
VPS41-212ENST00000482217 DDX46Q7L014 1031 aaKnown RBP5.1□□□□□ -1.59
VPS41-212ENST00000482217 KIAA0907Q7Z7F0 614 aaPredicted RBP5.1□□□□□ -1.59
VPS41-212ENST00000482217 KSR1Q8IVT5 923 aa5.1□□□□□ -1.59
VPS41-212ENST00000482217 DRC7Q8IY82 874 aa5.1□□□□□ -1.59
VPS41-212ENST00000482217 CHPFQ8IZ52 775 aa5.1□□□□□ -1.59
VPS41-212ENST00000482217 FLAD1Q8NFF5 587 aa5.1□□□□□ -1.59
VPS41-212ENST00000482217 ZNF622Q969S3 477 aaKnown RBP eCLIP5.1□□□□□ -1.591e-9■■■□□ 16.4
VPS41-212ENST00000482217 C1orf159Q96HA4 380 aa5.1□□□□□ -1.59
VPS41-212ENST00000482217 CEP89Q96ST8 783 aa5.1□□□□□ -1.59
VPS41-212ENST00000482217 FEZ1Q99689 392 aa5.1□□□□□ -1.59
VPS41-212ENST00000482217 ANAPC4Q9UJX5 808 aa5.1□□□□□ -1.59
VPS41-212ENST00000482217 ADAMTS6Q9UKP5 1117 aa5.1□□□□□ -1.59
VPS41-212ENST00000482217 NUB1Q9Y5A7 615 aa5.1□□□□□ -1.59
VPS41-212ENST00000482217 TMEM82A0PJX8 343 aa5.09□□□□□ -1.59
VPS41-212ENST00000482217 PRSS47A8MTI9 375 aa5.09□□□□□ -1.59
VPS41-212ENST00000482217 PLD2O14939 933 aa5.09□□□□□ -1.59
VPS41-212ENST00000482217 CLGNO14967 610 aa5.09□□□□□ -1.59
VPS41-212ENST00000482217 FGF10O15520 208 aaPredicted RBP5.09□□□□□ -1.59
VPS41-212ENST00000482217 THBDP07204 575 aa5.09□□□□□ -1.59
VPS41-212ENST00000482217 HSP90AA1P07900 732 aaKnown RBP5.09□□□□□ -1.59
VPS41-212ENST00000482217 TGFB3P10600 412 aa5.09□□□□□ -1.59
VPS41-212ENST00000482217 L1CAMP32004 1257 aa5.09□□□□□ -1.59
VPS41-212ENST00000482217 EXOSC10Q01780 885 aaKnown RBP5.09□□□□□ -1.59
VPS41-212ENST00000482217 CYP4F3Q08477 520 aa5.09□□□□□ -1.59
VPS41-212ENST00000482217 RAPGEF1Q13905 1077 aa5.09□□□□□ -1.59
VPS41-212ENST00000482217 TTF1Q15361 905 aaPredicted RBP5.09□□□□□ -1.59
VPS41-212ENST00000482217 TESK1Q15569 626 aa5.09□□□□□ -1.59
VPS41-212ENST00000482217 SF1Q15637 639 aaKnown RBP5.09□□□□□ -1.59
VPS41-212ENST00000482217 TKFCQ3LXA3 575 aa5.09□□□□□ -1.59
VPS41-212ENST00000482217 CCDC93Q567U6 631 aa5.09□□□□□ -1.59
VPS41-212ENST00000482217 DALRD3Q5D0E6 543 aaKnown RBP5.09□□□□□ -1.59
VPS41-212ENST00000482217 E4F1Q66K89 784 aaPredicted RBP5.09□□□□□ -1.59
VPS41-212ENST00000482217 IQCEQ6IPM2 695 aa5.09□□□□□ -1.59
VPS41-212ENST00000482217 CYP2R1Q6VVX0 501 aa5.09□□□□□ -1.59
VPS41-212ENST00000482217 SUGP1Q8IWZ8 645 aaKnown RBP5.09□□□□□ -1.59
VPS41-212ENST00000482217 PAF1Q8N7H5 531 aa5.09□□□□□ -1.59
VPS41-212ENST00000482217 TMEM145Q8NBT3 493 aa5.09□□□□□ -1.59
VPS41-212ENST00000482217 KREMEN2Q8NCW0 462 aa5.09□□□□□ -1.59
VPS41-212ENST00000482217 MYRIPQ8NFW9 859 aa5.09□□□□□ -1.59
VPS41-212ENST00000482217 NPLOC4Q8TAT6 608 aa5.09□□□□□ -1.59
VPS41-212ENST00000482217 FCRL2Q96LA5 508 aaPredicted RBP5.09□□□□□ -1.59
VPS41-212ENST00000482217 CDADC1Q9BWV3 514 aa5.09□□□□□ -1.59
VPS41-212ENST00000482217 MRPL4Q9BYD3 311 aaKnown RBP5.09□□□□□ -1.59
VPS41-212ENST00000482217 SLKQ9H2G2 1235 aaPredicted RBP5.09□□□□□ -1.59
VPS41-212ENST00000482217 TMX1Q9H3N1 280 aa5.09□□□□□ -1.59
VPS41-212ENST00000482217 CARS2Q9HA77 564 aaKnown RBP5.09□□□□□ -1.59
VPS41-212ENST00000482217 AP5S1Q9NUS5 200 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms