RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 ZXDAP98168 799 aa9.1□□□□□ -0.95
USP54-213ENST00000481991 UBE3CQ15386 1083 aa9.1□□□□□ -0.95
USP54-213ENST00000481991 SMAD2Q15796 467 aaKnown RBP9.1□□□□□ -0.95
USP54-213ENST00000481991 SBK1Q52WX2 424 aa9.1□□□□□ -0.95
USP54-213ENST00000481991 RNF207Q6ZRF8 634 aa9.1□□□□□ -0.95
USP54-213ENST00000481991 BMP8AQ7Z5Y6 402 aa9.1□□□□□ -0.95
USP54-213ENST00000481991 FBXL6Q8N531 539 aa9.1□□□□□ -0.95
USP54-213ENST00000481991 DHX38Q92620 1227 aaKnown RBP9.1□□□□□ -0.95
USP54-213ENST00000481991 KIF1BPQ96EK5 621 aa9.1□□□□□ -0.95
USP54-213ENST00000481991 RPGRIP1Q96KN7 1286 aa9.1□□□□□ -0.95
USP54-213ENST00000481991 STRBPQ96SI9 672 aaKnown RBP9.1□□□□□ -0.95
USP54-213ENST00000481991 GPCPD1Q9NPB8 672 aa9.1□□□□□ -0.95
USP54-213ENST00000481991 CD207Q9UJ71 328 aa9.1□□□□□ -0.95
USP54-213ENST00000481991 IGKV6D-41A0A0C4DH26 115 aa9.09□□□□□ -0.95
USP54-213ENST00000481991 RBM47A0AV96 593 aaKnown RBP9.09□□□□□ -0.95
USP54-213ENST00000481991 RSPH10B2B2RC85 870 aa9.09□□□□□ -0.95
USP54-213ENST00000481991 LINC01565O15544 149 aa9.09□□□□□ -0.95
USP54-213ENST00000481991 GH1P01241 217 aa9.09□□□□□ -0.95
USP54-213ENST00000481991 CXCL10P02778 98 aa9.09□□□□□ -0.95
USP54-213ENST00000481991 ICAM1P05362 532 aa9.09□□□□□ -0.95
USP54-213ENST00000481991 RSPH10BP0C881 870 aa9.09□□□□□ -0.95
USP54-213ENST00000481991 AVPR2P30518 371 aa9.09□□□□□ -0.95
USP54-213ENST00000481991 LTBRP36941 435 aa9.09□□□□□ -0.95
USP54-213ENST00000481991 ID4P47928 161 aa9.09□□□□□ -0.95
USP54-213ENST00000481991 PSEN2P49810 448 aa9.09□□□□□ -0.95
USP54-213ENST00000481991 PTK7Q13308 1070 aa9.09□□□□□ -0.95
USP54-213ENST00000481991 DGKDQ16760 1214 aa9.09□□□□□ -0.95
USP54-213ENST00000481991 TTBK2Q6IQ55 1244 aa9.09□□□□□ -0.95
USP54-213ENST00000481991 CEP85Q6P2H3 762 aa9.09□□□□□ -0.95
USP54-213ENST00000481991 SLC30A10Q6XR72 485 aa9.09□□□□□ -0.95
USP54-213ENST00000481991 FBXO11Q86XK2 927 aa9.09□□□□□ -0.95
USP54-213ENST00000481991 FIBCD1Q8N539 461 aa9.09□□□□□ -0.95
USP54-213ENST00000481991 MORC4Q8TE76 937 aa9.09□□□□□ -0.95
USP54-213ENST00000481991 GMCL1Q96IK5 515 aa9.09□□□□□ -0.95
USP54-213ENST00000481991 HAUS7Q99871 368 aa9.09□□□□□ -0.95
USP54-213ENST00000481991 TRPC6Q9Y210 931 aa9.09□□□□□ -0.95
USP54-213ENST00000481991 FRMPD2Q68DX3 1309 aaPredicted RBP9.08□□□□□ -0.96
USP54-213ENST00000481991 COL4A4P53420 1690 aaPredicted RBP9.08□□□□□ -0.96
USP54-213ENST00000481991 TSPY2A6NKD2 308 aa9.08□□□□□ -0.96
USP54-213ENST00000481991 GRM6O15303 877 aa9.08□□□□□ -0.96
USP54-213ENST00000481991 ARIH2O95376 493 aa9.08□□□□□ -0.96
USP54-213ENST00000481991 MMP3P08254 477 aa9.08□□□□□ -0.96
USP54-213ENST00000481991 ATP5JP18859 108 aa9.08□□□□□ -0.96
USP54-213ENST00000481991 VCPP55072 806 aaKnown RBP9.08□□□□□ -0.96
USP54-213ENST00000481991 HYAL1Q12794 435 aa9.08□□□□□ -0.96
USP54-213ENST00000481991 SMAD4Q13485 552 aaKnown RBP9.08□□□□□ -0.96
USP54-213ENST00000481991 MFSD10Q14728 455 aa9.08□□□□□ -0.96
USP54-213ENST00000481991 KIAA0753Q2KHM9 967 aa9.08□□□□□ -0.96
USP54-213ENST00000481991 RBM23Q86U06 439 aaKnown RBP9.08□□□□□ -0.96
USP54-213ENST00000481991 NEDD1Q8NHV4 660 aa9.08□□□□□ -0.96
USP54-213ENST00000481991 SEPT8Q92599 483 aa9.08□□□□□ -0.96
USP54-213ENST00000481991 IL17RAQ96F46 866 aa9.08□□□□□ -0.96
USP54-213ENST00000481991 IFIH1Q9BYX4 1025 aaKnown RBP9.08□□□□□ -0.96
USP54-213ENST00000481991 INCENPQ9NQS7 918 aa9.08□□□□□ -0.96
USP54-213ENST00000481991 GTF2IRD1Q9UHL9 959 aa9.08□□□□□ -0.96
USP54-213ENST00000481991 RANBP6O60518 1105 aaKnown RBP9.07□□□□□ -0.96
USP54-213ENST00000481991 ZNF286BP0CG31 522 aa9.07□□□□□ -0.96
USP54-213ENST00000481991 HTRA4P83105 476 aaPredicted RBP9.07□□□□□ -0.96
USP54-213ENST00000481991 USH1GQ495M9 461 aa9.07□□□□□ -0.96
USP54-213ENST00000481991 GIMAP6Q6P9H5 292 aa9.07□□□□□ -0.96
USP54-213ENST00000481991 RASGRP2Q7LDG7 609 aa9.07□□□□□ -0.96
USP54-213ENST00000481991 ASCL5Q7RTU5 278 aa9.07□□□□□ -0.96
USP54-213ENST00000481991 MICAL1Q8TDZ2 1067 aa9.07□□□□□ -0.96
USP54-213ENST00000481991 KAT2BQ92831 832 aa9.07□□□□□ -0.96
USP54-213ENST00000481991 TOP1MTQ969P6 601 aa9.07□□□□□ -0.96
USP54-213ENST00000481991 CTAGE1Q96RT6 745 aa9.07□□□□□ -0.96
USP54-213ENST00000481991 KATNAL1Q9BW62 490 aa9.07□□□□□ -0.96
USP54-213ENST00000481991 NACAP1Q9BZK3 213 aa9.07□□□□□ -0.96
USP54-213ENST00000481991 ALG13Q9NP73 1137 aaKnown RBP9.07□□□□□ -0.96
USP54-213ENST00000481991 TOMM22Q9NS69 142 aa9.07□□□□□ -0.96
USP54-213ENST00000481991 SYNPO2Q9UMS6 1093 aa9.07□□□□□ -0.96
USP54-213ENST00000481991 WDFY4Q6ZS81 3184 aa9.07□□□□□ -0.96
USP54-213ENST00000481991 TRANK1O15050 2925 aa9.07□□□□□ -0.96
USP54-213ENST00000481991 PTPRZ1P23471 2315 aaPredicted RBP9.06□□□□□ -0.96
USP54-213ENST00000481991 ZBED9Q6R2W3 1325 aa9.06□□□□□ -0.96
USP54-213ENST00000481991 EMSYQ7Z589 1322 aa9.06□□□□□ -0.96
USP54-213ENST00000481991 PATL2C9JE40 543 aaKnown RBP9.06□□□□□ -0.96
USP54-213ENST00000481991 NMT2O60551 498 aa9.06□□□□□ -0.96
USP54-213ENST00000481991 PPFIA3O75145 1194 aa9.06□□□□□ -0.96
USP54-213ENST00000481991 CTSHP09668 335 aa9.06□□□□□ -0.96
USP54-213ENST00000481991 IBSPP21815 317 aaPredicted RBP9.06□□□□□ -0.96
USP54-213ENST00000481991 SP100P23497 879 aaPredicted RBP9.06□□□□□ -0.96
USP54-213ENST00000481991 BMPR1AP36894 532 aa9.06□□□□□ -0.96
USP54-213ENST00000481991 RPS6P62753 249 aaKnown RBP9.06□□□□□ -0.96
USP54-213ENST00000481991 SIGLEC14Q08ET2 396 aa9.06□□□□□ -0.96
USP54-213ENST00000481991 PPP4R3BQ5MIZ7 849 aa9.06□□□□□ -0.96
USP54-213ENST00000481991 SYDE2Q5VT97 1194 aa9.06□□□□□ -0.96
USP54-213ENST00000481991 ERMP1Q7Z2K6 904 aa9.06□□□□□ -0.96
USP54-213ENST00000481991 SESTD1Q86VW0 696 aa9.06□□□□□ -0.96
USP54-213ENST00000481991 IFNL3Q8IZI9 196 aa9.06□□□□□ -0.96
USP54-213ENST00000481991 DNERQ8NFT8 737 aa9.06□□□□□ -0.96
USP54-213ENST00000481991 WNT8BQ93098 351 aa9.06□□□□□ -0.96
USP54-213ENST00000481991 PPP2R3CQ969Q6 453 aa9.06□□□□□ -0.96
USP54-213ENST00000481991 OSBP2Q969R2 916 aa9.06□□□□□ -0.96
USP54-213ENST00000481991 FSD1Q9BTV5 496 aa9.06□□□□□ -0.96
USP54-213ENST00000481991 C11orf84Q9BUA3 381 aaPredicted RBP9.06□□□□□ -0.96
USP54-213ENST00000481991 LOC102724159A0A0B4J2E5 919 aa9.05□□□□□ -0.96
USP54-213ENST00000481991 GPAA1O43292 621 aa9.05□□□□□ -0.96
USP54-213ENST00000481991 PLA2G6O60733 806 aa9.05□□□□□ -0.96
USP54-213ENST00000481991 RAB11FIP3O75154 756 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms