RNA–Protein interactions for RNA: ENST00000480744.2

LIMS3-203, Transcript of LIM zinc finger domain containing 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIMS3, Length 1,197 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-203ENST00000480744 NCOA7Q8NI08 942 aa17.71■□□□□ 0.43
LIMS3-203ENST00000480744 PIGSQ96S52 555 aa17.71■□□□□ 0.43
LIMS3-203ENST00000480744 GAS2L1Q99501 681 aaPredicted RBP17.71■□□□□ 0.43
LIMS3-203ENST00000480744 PRDM12Q9H4Q4 367 aa17.71■□□□□ 0.43
LIMS3-203ENST00000480744 SENP2Q9HC62 589 aa17.71■□□□□ 0.43
LIMS3-203ENST00000480744 MRVI1Q9Y6F6 885 aa17.71■□□□□ 0.43
LIMS3-203ENST00000480744 OPLAHO14841 1288 aa17.7■□□□□ 0.42
LIMS3-203ENST00000480744 SGSM2O43147 1006 aa17.7■□□□□ 0.42
LIMS3-203ENST00000480744 EIF3JO75822 258 aaKnown RBP17.7■□□□□ 0.42
LIMS3-203ENST00000480744 RABGGTBP53611 331 aa17.7■□□□□ 0.42
LIMS3-203ENST00000480744 PTPN11Q06124 597 aaPredicted RBP17.7■□□□□ 0.42
LIMS3-203ENST00000480744 TMEM67Q5HYA8 995 aa17.7■□□□□ 0.42
LIMS3-203ENST00000480744 MTMR8Q96EF0 704 aa17.7■□□□□ 0.42
LIMS3-203ENST00000480744 DDX41Q9UJV9 622 aaKnown RBP17.7■□□□□ 0.42
LIMS3-203ENST00000480744 YBX2Q9Y2T7 364 aaKnown RBP17.7■□□□□ 0.42
LIMS3-203ENST00000480744 TET1Q8NFU7 2136 aa17.69■□□□□ 0.42
LIMS3-203ENST00000480744 SORBS3O60504 671 aa17.69■□□□□ 0.42
LIMS3-203ENST00000480744 PFKMP08237 780 aa17.69■□□□□ 0.42
LIMS3-203ENST00000480744 CASTP20810 708 aaKnown RBP17.69■□□□□ 0.42
LIMS3-203ENST00000480744 BFSP2Q13515 415 aa17.69■□□□□ 0.42
LIMS3-203ENST00000480744 PTGISQ16647 500 aa17.69■□□□□ 0.42
LIMS3-203ENST00000480744 STOX1Q6ZVD7 989 aa17.69■□□□□ 0.42
LIMS3-203ENST00000480744 PIBF1Q8WXW3 757 aa17.69■□□□□ 0.42
LIMS3-203ENST00000480744 PPM1EQ8WY54 764 aa17.69■□□□□ 0.42
LIMS3-203ENST00000480744 VWCEQ96DN2 955 aa17.69■□□□□ 0.42
LIMS3-203ENST00000480744 SLC28A3Q9HAS3 691 aa17.69■□□□□ 0.42
LIMS3-203ENST00000480744 ACTN1P12814 892 aa17.68■□□□□ 0.42
LIMS3-203ENST00000480744 ATP2A2P16615 1042 aaKnown RBP17.68■□□□□ 0.42
LIMS3-203ENST00000480744 TRAF1Q13077 416 aa17.68■□□□□ 0.42
LIMS3-203ENST00000480744 DGKDQ16760 1214 aa17.68■□□□□ 0.42
LIMS3-203ENST00000480744 SLC35G1Q2M3R5 365 aa17.68■□□□□ 0.42
LIMS3-203ENST00000480744 CATIPQ7Z7H3 387 aa17.68■□□□□ 0.42
LIMS3-203ENST00000480744 FCHSD1Q86WN1 690 aa17.68■□□□□ 0.42
LIMS3-203ENST00000480744 DHX37Q8IY37 1157 aaKnown RBP17.68■□□□□ 0.42
LIMS3-203ENST00000480744 USP38Q8NB14 1042 aa17.68■□□□□ 0.42
LIMS3-203ENST00000480744 PRUNE2Q8WUY3 3088 aa17.68■□□□□ 0.42
LIMS3-203ENST00000480744 PDCD2LQ9BRP1 358 aa17.68■□□□□ 0.42
LIMS3-203ENST00000480744 FTOQ9C0B1 505 aaKnown RBP eCLIP17.68■□□□□ 0.42
LIMS3-203ENST00000480744 DOCK5Q9H7D0 1870 aa17.68■□□□□ 0.42
LIMS3-203ENST00000480744 RBM8AQ9Y5S9 174 aaKnown RBP17.68■□□□□ 0.42
LIMS3-203ENST00000480744 GCOM1H8Y6P7 765 aaPredicted RBP17.67■□□□□ 0.42
LIMS3-203ENST00000480744 PITPNM1O00562 1244 aa17.67■□□□□ 0.42
LIMS3-203ENST00000480744 IQCF3P0C7M6 154 aa17.67■□□□□ 0.42
LIMS3-203ENST00000480744 POLR2MP0CAP2 368 aa17.67■□□□□ 0.42
LIMS3-203ENST00000480744 MYOGP15173 224 aa17.67■□□□□ 0.42
LIMS3-203ENST00000480744 RFC2P35250 354 aa17.67■□□□□ 0.42
LIMS3-203ENST00000480744 ANTXR2P58335 489 aa17.67■□□□□ 0.42
LIMS3-203ENST00000480744 GHRHRQ02643 423 aa17.67■□□□□ 0.42
LIMS3-203ENST00000480744 LAMC2Q13753 1193 aa17.67■□□□□ 0.42
LIMS3-203ENST00000480744 PGM5Q15124 567 aa17.67■□□□□ 0.42
LIMS3-203ENST00000480744 GDF6Q6KF10 455 aaPredicted RBP17.67■□□□□ 0.42
LIMS3-203ENST00000480744 CCDC155Q8N6L0 562 aa17.67■□□□□ 0.42
LIMS3-203ENST00000480744 IL31RAQ8NI17 732 aa17.67■□□□□ 0.42
LIMS3-203ENST00000480744 KAT2BQ92831 832 aa17.67■□□□□ 0.42
LIMS3-203ENST00000480744 ZFP91Q96JP5 570 aaPredicted RBP17.67■□□□□ 0.42
LIMS3-203ENST00000480744 ALG1Q9BT22 464 aa17.67■□□□□ 0.42
LIMS3-203ENST00000480744 RIOX1Q9H6W3 641 aa17.67■□□□□ 0.42
LIMS3-203ENST00000480744 MAP3K20Q9NYL2 800 aaKnown RBP17.67■□□□□ 0.42
LIMS3-203ENST00000480744 PNMA6FA0A0J9YX94 578 aa17.66■□□□□ 0.42
LIMS3-203ENST00000480744 CYTH3O43739 400 aa17.66■□□□□ 0.42
LIMS3-203ENST00000480744 ZNF286BP0CG31 522 aa17.66■□□□□ 0.42
LIMS3-203ENST00000480744 IGFBP4P22692 258 aa17.66■□□□□ 0.42
LIMS3-203ENST00000480744 PSEN2P49810 448 aa17.66■□□□□ 0.42
LIMS3-203ENST00000480744 TROAPQ12815 778 aa17.66■□□□□ 0.42
LIMS3-203ENST00000480744 PPP2R2DQ66LE6 453 aa17.66■□□□□ 0.42
LIMS3-203ENST00000480744 C7orf31Q8N865 590 aa17.66■□□□□ 0.42
LIMS3-203ENST00000480744 MAP4K1Q92918 833 aa17.66■□□□□ 0.42
LIMS3-203ENST00000480744 PCDHA11Q9Y5I1 949 aa17.66■□□□□ 0.42
LIMS3-203ENST00000480744 CHD9Q3L8U1 2897 aa17.65■□□□□ 0.42
LIMS3-203ENST00000480744 PTPRSQ13332 1948 aa17.65■□□□□ 0.42
LIMS3-203ENST00000480744 RGS20O76081 388 aa17.65■□□□□ 0.42
LIMS3-203ENST00000480744 CCND2P30279 289 aa17.65■□□□□ 0.42
LIMS3-203ENST00000480744 MFSD10Q14728 455 aa17.65■□□□□ 0.42
LIMS3-203ENST00000480744 MB21D2Q8IYB1 491 aaPredicted RBP17.65■□□□□ 0.42
LIMS3-203ENST00000480744 SAMD3Q8N6K7 520 aa17.65■□□□□ 0.42
LIMS3-203ENST00000480744 PPTC7Q8NI37 304 aa17.65■□□□□ 0.42
LIMS3-203ENST00000480744 EMID1Q96A84 441 aaPredicted RBP17.65■□□□□ 0.42
LIMS3-203ENST00000480744 MYL10Q9BUA6 226 aa17.65■□□□□ 0.42
LIMS3-203ENST00000480744 KATNAL1Q9BW62 490 aa17.65■□□□□ 0.42
LIMS3-203ENST00000480744 HDAC6Q9UBN7 1215 aa17.65■□□□□ 0.42
LIMS3-203ENST00000480744 GGPS1O95749 300 aa17.64■□□□□ 0.41
LIMS3-203ENST00000480744 CCDC85BQ15834 202 aaPredicted RBP17.64■□□□□ 0.41
LIMS3-203ENST00000480744 KIAA0753Q2KHM9 967 aa17.64■□□□□ 0.41
LIMS3-203ENST00000480744 KCNV1Q6PIU1 500 aa17.64■□□□□ 0.41
LIMS3-203ENST00000480744 CASC1Q6TDU7 716 aa17.64■□□□□ 0.41
LIMS3-203ENST00000480744 VSIG10LQ86VR7 867 aa17.64■□□□□ 0.41
LIMS3-203ENST00000480744 SESTD1Q86VW0 696 aa17.64■□□□□ 0.41
LIMS3-203ENST00000480744 ZNF654Q8IZM8 581 aa17.64■□□□□ 0.41
LIMS3-203ENST00000480744 CTCFLQ8NI51 663 aaPredicted RBP17.64■□□□□ 0.41
LIMS3-203ENST00000480744 CAGE1Q8TC20 777 aa17.64■□□□□ 0.41
LIMS3-203ENST00000480744 IGDCC4Q8TDY8 1250 aa17.64■□□□□ 0.41
LIMS3-203ENST00000480744 SPATA33Q96N06 139 aa17.64■□□□□ 0.41
LIMS3-203ENST00000480744 GTF2IRD1Q9UHL9 959 aa17.64■□□□□ 0.41
LIMS3-203ENST00000480744 PRC1O43663 620 aa17.63■□□□□ 0.41
LIMS3-203ENST00000480744 UBA1P22314 1058 aaKnown RBP17.63■□□□□ 0.41
LIMS3-203ENST00000480744 ADGRE1Q14246 886 aa17.63■□□□□ 0.41
LIMS3-203ENST00000480744 CELF3Q5SZQ8 465 aaKnown RBP17.63■□□□□ 0.41
LIMS3-203ENST00000480744 MYSM1Q5VVJ2 828 aa17.63■□□□□ 0.41
LIMS3-203ENST00000480744 NFXL1Q6ZNB6 911 aa17.63■□□□□ 0.41
LIMS3-203ENST00000480744 AFAP1L1Q8TED9 768 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms