RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 HAUS2Q9NVX0 235 aa14.82□□□□□ -0.04
USP42-206ENST00000479544 TPX2Q9ULW0 747 aaKnown RBP14.82□□□□□ -0.04
USP42-206ENST00000479544 FRMPD2Q68DX3 1309 aaPredicted RBP14.82□□□□□ -0.04
USP42-206ENST00000479544 PTPAQ15257 358 aa14.82□□□□□ -0.04
USP42-206ENST00000479544 TTLL11Q8NHH1 800 aa14.82□□□□□ -0.04
USP42-206ENST00000479544 STRCP1A6NGW2 1772 aa14.82□□□□□ -0.04
USP42-206ENST00000479544 SPDYE3A6NKU9 549 aa14.81□□□□□ -0.04
USP42-206ENST00000479544 LDHBP07195 334 aaKnown RBP14.81□□□□□ -0.04
USP42-206ENST00000479544 HDLBPQ00341 1268 aaKnown RBP14.81□□□□□ -0.04
USP42-206ENST00000479544 PPP2R5BQ15173 497 aa14.81□□□□□ -0.04
USP42-206ENST00000479544 FAM26FQ5R3K3 315 aa14.81□□□□□ -0.04
USP42-206ENST00000479544 DISC1Q9NRI5 854 aa14.81□□□□□ -0.04
USP42-206ENST00000479544 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.81□□□□□ -0.04
USP42-206ENST00000479544 H0Y3Z8 333 aa14.81□□□□□ -0.04
USP42-206ENST00000479544 PPP1R37O75864 691 aa14.81□□□□□ -0.04
USP42-206ENST00000479544 GCNT3O95395 438 aa14.81□□□□□ -0.04
USP42-206ENST00000479544 CYP4A11Q02928 519 aa14.81□□□□□ -0.04
USP42-206ENST00000479544 ERMNQ8TAM6 284 aa14.81□□□□□ -0.04
USP42-206ENST00000479544 GDAP1Q8TB36 358 aa14.81□□□□□ -0.04
USP42-206ENST00000479544 HDAC7Q8WUI4 952 aa14.81□□□□□ -0.04
USP42-206ENST00000479544 NLRP3Q96P20 1036 aa14.81□□□□□ -0.04
USP42-206ENST00000479544 YIPF3Q9GZM5 350 aa14.81□□□□□ -0.04
USP42-206ENST00000479544 RBM12Q9NTZ6 932 aaKnown RBP14.81□□□□□ -0.04
USP42-206ENST00000479544 PHF20L1A8MW92 1017 aa14.81□□□□□ -0.04
USP42-206ENST00000479544 EPB41P11171 864 aaKnown RBP14.81□□□□□ -0.04
USP42-206ENST00000479544 KRT15P19012 456 aa14.81□□□□□ -0.04
USP42-206ENST00000479544 FAM196AQ6ZSG2 479 aa14.81□□□□□ -0.04
USP42-206ENST00000479544 LMNTD2Q8IXW0 634 aa14.81□□□□□ -0.04
USP42-206ENST00000479544 HNRNPLLQ8WVV9 542 aaKnown RBP14.81□□□□□ -0.04
USP42-206ENST00000479544 ARMCX3Q9UH62 379 aaPredicted RBP14.81□□□□□ -0.04
USP42-206ENST00000479544 IKBKGQ9Y6K9 419 aa14.81□□□□□ -0.04
USP42-206ENST00000479544 SLC1A4P43007 532 aa14.8□□□□□ -0.04
USP42-206ENST00000479544 VWA3BQ502W6 1294 aa14.8□□□□□ -0.04
USP42-206ENST00000479544 EP400NLQ6ZTU2 488 aa14.8□□□□□ -0.04
USP42-206ENST00000479544 GPBP1Q86WP2 473 aa14.8□□□□□ -0.04
USP42-206ENST00000479544 ZIM3Q96PE6 472 aa14.8□□□□□ -0.04
USP42-206ENST00000479544 HOMER2Q9NSB8 354 aa14.8□□□□□ -0.04
USP42-206ENST00000479544 ERVV-2B6SEH9 535 aa14.8□□□□□ -0.04
USP42-206ENST00000479544 PCCAP05165 728 aaPredicted RBP14.8□□□□□ -0.04
USP42-206ENST00000479544 RETREG2Q8NC44 543 aa14.8□□□□□ -0.04
USP42-206ENST00000479544 PLVAPQ9BX97 442 aa14.8□□□□□ -0.04
USP42-206ENST00000479544 INTS13Q9NVM9 706 aa14.8□□□□□ -0.04
USP42-206ENST00000479544 LSP1P33241 339 aa14.8□□□□□ -0.04
USP42-206ENST00000479544 LRRC14Q15048 493 aa14.8□□□□□ -0.04
USP42-206ENST00000479544 TBC1D10BQ4KMP7 808 aaPredicted RBP14.8□□□□□ -0.04
USP42-206ENST00000479544 KRT25Q7Z3Z0 450 aa14.8□□□□□ -0.04
USP42-206ENST00000479544 DHTKD1Q96HY7 919 aaPredicted RBP14.8□□□□□ -0.04
USP42-206ENST00000479544 TRIM6Q9C030 488 aaPredicted RBP14.8□□□□□ -0.04
USP42-206ENST00000479544 SNX12Q9UMY4 172 aa14.8□□□□□ -0.04
USP42-206ENST00000479544 CHD2O14647 1828 aaKnown RBP14.8□□□□□ -0.04
USP42-206ENST00000479544 CIAO1O76071 339 aa14.8□□□□□ -0.04
USP42-206ENST00000479544 ALDH3A1P30838 453 aa14.8□□□□□ -0.04
USP42-206ENST00000479544 PPP1R2P41236 205 aa14.8□□□□□ -0.04
USP42-206ENST00000479544 CYP2J2P51589 502 aa14.8□□□□□ -0.04
USP42-206ENST00000479544 MAN2A1Q16706 1144 aa14.8□□□□□ -0.04
USP42-206ENST00000479544 PPP1R14CQ8TAE6 165 aa14.8□□□□□ -0.04
USP42-206ENST00000479544 STAG1Q8WVM7 1258 aa14.8□□□□□ -0.04
USP42-206ENST00000479544 KIFC2Q96AC6 838 aa14.8□□□□□ -0.04
USP42-206ENST00000479544 DYNLL2Q96FJ2 89 aa14.8□□□□□ -0.04
USP42-206ENST00000479544 RNPC3Q96LT9 517 aaKnown RBP14.8□□□□□ -0.04
USP42-206ENST00000479544 SNX24Q9Y343 169 aa14.8□□□□□ -0.04
USP42-206ENST00000479544 OVOS2A0A0J9YW53 1432 aa14.79□□□□□ -0.04
USP42-206ENST00000479544 OVOS2Q6IE36 1432 aa14.79□□□□□ -0.04
USP42-206ENST00000479544 LRP6O75581 1613 aa14.79□□□□□ -0.04
USP42-206ENST00000479544 GMNCA6NCL1 334 aa14.79□□□□□ -0.04
USP42-206ENST00000479544 XRCC5P13010 732 aaKnown RBP14.79□□□□□ -0.04
USP42-206ENST00000479544 BMP6P22004 513 aa14.79□□□□□ -0.04
USP42-206ENST00000479544 HIBADHP31937 336 aaKnown RBP14.79□□□□□ -0.04
USP42-206ENST00000479544 STAT1P42224 750 aa14.79□□□□□ -0.04
USP42-206ENST00000479544 CCDC38Q502W7 563 aa14.79□□□□□ -0.04
USP42-206ENST00000479544 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.79□□□□□ -0.04
USP42-206ENST00000479544 ZSCAN5CA6NGD5 496 aaPredicted RBP14.79□□□□□ -0.04
USP42-206ENST00000479544 LRRN2O75325 713 aa14.79□□□□□ -0.04
USP42-206ENST00000479544 RPL13P26373 211 aaKnown RBP14.79□□□□□ -0.04
USP42-206ENST00000479544 PRPHP41219 470 aa14.79□□□□□ -0.04
USP42-206ENST00000479544 ERFP50548 548 aa14.79□□□□□ -0.04
USP42-206ENST00000479544 FOXO4P98177 505 aa14.79□□□□□ -0.04
USP42-206ENST00000479544 DDB1Q16531 1140 aa14.79□□□□□ -0.04
USP42-206ENST00000479544 TAOK1Q7L7X3 1001 aa14.79□□□□□ -0.04
USP42-206ENST00000479544 NEK8Q86SG6 692 aa14.79□□□□□ -0.04
USP42-206ENST00000479544 IGDCC4Q8TDY8 1250 aa14.79□□□□□ -0.04
USP42-206ENST00000479544 KLHL14Q9P2G3 628 aa14.79□□□□□ -0.04
USP42-206ENST00000479544 LIMA1Q9UHB6 759 aaKnown RBP14.79□□□□□ -0.04
USP42-206ENST00000479544 USTQ9Y2C2 406 aa14.79□□□□□ -0.04
USP42-206ENST00000479544 MYCNP04198 464 aaPredicted RBP14.79□□□□□ -0.04
USP42-206ENST00000479544 CYP2D6P10635 497 aa14.79□□□□□ -0.04
USP42-206ENST00000479544 AP1ARQ63HQ0 302 aa14.79□□□□□ -0.04
USP42-206ENST00000479544 ENAHQ8N8S7 591 aaPredicted RBP14.79□□□□□ -0.04
USP42-206ENST00000479544 ZNF473Q8WTR7 871 aaKnown RBP14.79□□□□□ -0.04
USP42-206ENST00000479544 CUL5Q93034 780 aa14.79□□□□□ -0.04
USP42-206ENST00000479544 STMN2Q93045 179 aa14.79□□□□□ -0.04
USP42-206ENST00000479544 HVCN1Q96D96 273 aa14.79□□□□□ -0.04
USP42-206ENST00000479544 IL17RAQ96F46 866 aa14.79□□□□□ -0.04
USP42-206ENST00000479544 IQCGQ9H095 443 aaKnown RBP14.79□□□□□ -0.04
USP42-206ENST00000479544 RAB17Q9H0T7 212 aa14.79□□□□□ -0.04
USP42-206ENST00000479544 PANK4Q9NVE7 773 aa14.79□□□□□ -0.04
USP42-206ENST00000479544 ENO4A6NNW6 628 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 CLIC2O15247 247 aa14.78□□□□□ -0.04
USP42-206ENST00000479544 SKAP2O75563 359 aaPredicted RBP14.78□□□□□ -0.04
USP42-206ENST00000479544 APBA3O96018 575 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms