RNA–Protein interactions for RNA: ENST00000477554.5

PTPN7-209, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

APPRIS ALT2 TSL 2

Gene PTPN7, Length 1,432 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-209ENST00000477554 HEATR3Q7Z4Q2 680 aa20.36■□□□□ 0.85
PTPN7-209ENST00000477554 PCSK9Q8NBP7 692 aaKnown RBP20.36■□□□□ 0.85
PTPN7-209ENST00000477554 SCFD2Q8WU76 684 aa20.36■□□□□ 0.85
PTPN7-209ENST00000477554 IWS1Q96ST2 819 aa20.36■□□□□ 0.85
PTPN7-209ENST00000477554 NCOA5Q9HCD5 579 aaKnown RBP20.36■□□□□ 0.85
PTPN7-209ENST00000477554 ZSWIM6Q9HCJ5 1215 aa20.36■□□□□ 0.85
PTPN7-209ENST00000477554 SEC63Q9UGP8 760 aaKnown RBP20.36■□□□□ 0.85
PTPN7-209ENST00000477554 V9GY48 417 aaPredicted RBP20.36■□□□□ 0.85
PTPN7-209ENST00000477554 MYH7BA7E2Y1 1941 aa20.36■□□□□ 0.85
PTPN7-209ENST00000477554 FGD1P98174 961 aa20.36■□□□□ 0.85
PTPN7-209ENST00000477554 ARHGAP1Q07960 439 aa20.36■□□□□ 0.85
PTPN7-209ENST00000477554 SYNE3Q6ZMZ3 975 aa20.36■□□□□ 0.85
PTPN7-209ENST00000477554 RUFY3Q7L099 469 aa20.36■□□□□ 0.85
PTPN7-209ENST00000477554 VSIG10LQ86VR7 867 aa20.36■□□□□ 0.85
PTPN7-209ENST00000477554 BADQ92934 168 aa20.36■□□□□ 0.85
PTPN7-209ENST00000477554 GLT1D1Q96MS3 346 aa20.36■□□□□ 0.85
PTPN7-209ENST00000477554 DDX41Q9UJV9 622 aaKnown RBP20.36■□□□□ 0.85
PTPN7-209ENST00000477554 Q9Y3F1 56 aa20.36■□□□□ 0.85
PTPN7-209ENST00000477554 MYL3P08590 195 aa20.35■□□□□ 0.85
PTPN7-209ENST00000477554 METAP2P50579 478 aaKnown RBP eCLIP20.35■□□□□ 0.85
PTPN7-209ENST00000477554 SEMA3FQ13275 785 aa20.35■□□□□ 0.85
PTPN7-209ENST00000477554 ANKRD33Q7Z3H0 272 aa20.35■□□□□ 0.85
PTPN7-209ENST00000477554 AFG1LQ8WV93 481 aa20.35■□□□□ 0.85
PTPN7-209ENST00000477554 PGBD1Q96JS3 809 aa20.35■□□□□ 0.85
PTPN7-209ENST00000477554 C22orf23Q9BZE7 217 aa20.35■□□□□ 0.85
PTPN7-209ENST00000477554 RTEL1Q9NZ71 1219 aa20.35■□□□□ 0.85
PTPN7-209ENST00000477554 ELP1O95163 1332 aa20.34■□□□□ 0.85
PTPN7-209ENST00000477554 FRMPD4Q14CM0 1322 aa20.34■□□□□ 0.85
PTPN7-209ENST00000477554 ARVCFO00192 962 aa20.34■□□□□ 0.85
PTPN7-209ENST00000477554 EIF3JO75822 258 aaKnown RBP20.34■□□□□ 0.85
PTPN7-209ENST00000477554 CLTBP09497 229 aa20.34■□□□□ 0.85
PTPN7-209ENST00000477554 EPHB4P54760 987 aa20.34■□□□□ 0.85
PTPN7-209ENST00000477554 CCT2P78371 535 aaKnown RBP20.34■□□□□ 0.85
PTPN7-209ENST00000477554 PURAQ00577 322 aaKnown RBP20.34■□□□□ 0.85
PTPN7-209ENST00000477554 TTLL4Q14679 1199 aa20.34■□□□□ 0.85
PTPN7-209ENST00000477554 FAM126BQ8IXS8 530 aa20.34■□□□□ 0.85
PTPN7-209ENST00000477554 PHKBQ93100 1093 aa20.34■□□□□ 0.85
PTPN7-209ENST00000477554 MAF1Q9H063 256 aa20.34■□□□□ 0.85
PTPN7-209ENST00000477554 RBM28Q9NW13 759 aaKnown RBP20.34■□□□□ 0.85
PTPN7-209ENST00000477554 A0A0U1RQG5 324 aaPredicted RBP20.33■□□□□ 0.84
PTPN7-209ENST00000477554 STXBP3O00186 592 aa20.33■□□□□ 0.84
PTPN7-209ENST00000477554 PDIA3P30101 505 aaKnown RBP20.33■□□□□ 0.84
PTPN7-209ENST00000477554 SLC43A3Q8NBI5 491 aa20.33■□□□□ 0.84
PTPN7-209ENST00000477554 TRPV6Q9H1D0 765 aa20.33■□□□□ 0.84
PTPN7-209ENST00000477554 SCN10AQ9Y5Y9 1956 aa20.33■□□□□ 0.84
PTPN7-209ENST00000477554 A6NJR5 290 aa20.32■□□□□ 0.84
PTPN7-209ENST00000477554 RBM25P49756 843 aaKnown RBP20.32■□□□□ 0.84
PTPN7-209ENST00000477554 ITGA7Q13683 1181 aa20.32■□□□□ 0.84
PTPN7-209ENST00000477554 NTRK3Q16288 839 aa20.32■□□□□ 0.84
PTPN7-209ENST00000477554 PKN1Q16512 942 aa20.32■□□□□ 0.84
PTPN7-209ENST00000477554 FBXL16Q8N461 479 aa20.32■□□□□ 0.84
PTPN7-209ENST00000477554 SMARCC2Q8TAQ2 1214 aa20.32■□□□□ 0.84
PTPN7-209ENST00000477554 MPHOSPH6Q99547 160 aaKnown RBP20.32■□□□□ 0.84
PTPN7-209ENST00000477554 UBE2OQ9C0C9 1292 aaKnown RBP20.32■□□□□ 0.84
PTPN7-209ENST00000477554 PSTPIP2Q9H939 334 aa20.32■□□□□ 0.84
PTPN7-209ENST00000477554 MAP3K20Q9NYL2 800 aaKnown RBP20.32■□□□□ 0.84
PTPN7-209ENST00000477554 TBX21Q9UL17 535 aa20.32■□□□□ 0.84
PTPN7-209ENST00000477554 MRVI1Q9Y6F6 885 aa20.32■□□□□ 0.84
PTPN7-209ENST00000477554 UMODL1Q5DID0 1318 aa20.32■□□□□ 0.84
PTPN7-209ENST00000477554 NID2Q14112 1375 aa20.32■□□□□ 0.84
PTPN7-209ENST00000477554 PIK3CDO00329 1044 aa20.31■□□□□ 0.84
PTPN7-209ENST00000477554 MMP3P08254 477 aa20.31■□□□□ 0.84
PTPN7-209ENST00000477554 PSMA5P28066 241 aa20.31■□□□□ 0.84
PTPN7-209ENST00000477554 CCND2P30279 289 aa20.31■□□□□ 0.84
PTPN7-209ENST00000477554 BMP8BP34820 402 aa20.31■□□□□ 0.84
PTPN7-209ENST00000477554 LRCH3Q96II8 777 aa20.31■□□□□ 0.84
PTPN7-209ENST00000477554 TBC1D32Q96NH3 1257 aa20.31■□□□□ 0.84
PTPN7-209ENST00000477554 TMEM39AQ9NV64 488 aa20.31■□□□□ 0.84
PTPN7-209ENST00000477554 TMEM260Q9NX78 707 aa20.31■□□□□ 0.84
PTPN7-209ENST00000477554 B4DLN1 442 aa20.3■□□□□ 0.84
PTPN7-209ENST00000477554 B4GALT4O60513 344 aa20.3■□□□□ 0.84
PTPN7-209ENST00000477554 CD4P01730 458 aa20.3■□□□□ 0.84
PTPN7-209ENST00000477554 UBA1P22314 1058 aaKnown RBP20.3■□□□□ 0.84
PTPN7-209ENST00000477554 MRPL12P52815 198 aaKnown RBP20.3■□□□□ 0.84
PTPN7-209ENST00000477554 C9orf50Q5SZB4 431 aa20.3■□□□□ 0.84
PTPN7-209ENST00000477554 SAMD3Q8N6K7 520 aa20.3■□□□□ 0.84
PTPN7-209ENST00000477554 KAT2BQ92831 832 aa20.3■□□□□ 0.84
PTPN7-209ENST00000477554 TOX2Q96NM4 488 aa20.3■□□□□ 0.84
PTPN7-209ENST00000477554 TRMT13Q9NUP7 481 aaKnown RBP20.3■□□□□ 0.84
PTPN7-209ENST00000477554 CYP46A1Q9Y6A2 500 aa20.3■□□□□ 0.84
PTPN7-209ENST00000477554 KIAA0355O15063 1070 aa20.29■□□□□ 0.84
PTPN7-209ENST00000477554 NKRFO15226 690 aaKnown RBP eCLIP20.29■□□□□ 0.84
PTPN7-209ENST00000477554 GH1P01241 217 aa20.29■□□□□ 0.84
PTPN7-209ENST00000477554 NAPAP54920 295 aa20.29■□□□□ 0.84
PTPN7-209ENST00000477554 EVCP57679 992 aa20.29■□□□□ 0.84
PTPN7-209ENST00000477554 CHMP4BP1P59074 171 aa20.29■□□□□ 0.84
PTPN7-209ENST00000477554 ANAPC15P60006 121 aa20.29■□□□□ 0.84
PTPN7-209ENST00000477554 STK3Q13188 491 aa20.29■□□□□ 0.84
PTPN7-209ENST00000477554 HSDL1Q3SXM5 330 aa20.29■□□□□ 0.84
PTPN7-209ENST00000477554 ZNF286BP0CG31 522 aa20.28■□□□□ 0.84
PTPN7-209ENST00000477554 CPT1AP50416 773 aa20.28■□□□□ 0.84
PTPN7-209ENST00000477554 RCAN1P53805 252 aa20.28■□□□□ 0.84
PTPN7-209ENST00000477554 TRAF1Q13077 416 aa20.28■□□□□ 0.84
PTPN7-209ENST00000477554 NBPF20Q3BBV1 942 aa20.28■□□□□ 0.84
PTPN7-209ENST00000477554 INPP4AQ96PE3 977 aaPredicted RBP20.28■□□□□ 0.84
PTPN7-209ENST00000477554 PPP1R12CQ9BZL4 782 aa20.28■□□□□ 0.84
PTPN7-209ENST00000477554 TM6SF1Q9BZW5 370 aa20.28■□□□□ 0.84
PTPN7-209ENST00000477554 PRKAG2Q9UGJ0 569 aa20.28■□□□□ 0.84
PTPN7-209ENST00000477554 DCDC2CA8MYV0 355 aa20.27■□□□□ 0.84
PTPN7-209ENST00000477554 ZEB2O60315 1214 aa20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 209.7 ms