RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 MARCH6O60337 910 aa13.68□□□□□ -0.22
SYNE1-222ENST00000474655 CCNE1P24864 410 aa13.68□□□□□ -0.22
SYNE1-222ENST00000474655 PMS1P54277 932 aaKnown RBP13.68□□□□□ -0.22
SYNE1-222ENST00000474655 STK4Q13043 487 aa13.68□□□□□ -0.22
SYNE1-222ENST00000474655 E4F1Q66K89 784 aaPredicted RBP13.68□□□□□ -0.22
SYNE1-222ENST00000474655 FOXR2Q6PJQ5 311 aa13.68□□□□□ -0.22
SYNE1-222ENST00000474655 NYAP1Q6ZVC0 841 aa13.68□□□□□ -0.22
SYNE1-222ENST00000474655 SAMD7Q7Z3H4 446 aa13.68□□□□□ -0.22
SYNE1-222ENST00000474655 TC2NQ8N9U0 490 aa13.68□□□□□ -0.22
SYNE1-222ENST00000474655 NOC3LQ8WTT2 800 aaKnown RBP13.68□□□□□ -0.22
SYNE1-222ENST00000474655 HACL1Q9UJ83 578 aa13.68□□□□□ -0.22
SYNE1-222ENST00000474655 MAPK8IP1Q9UQF2 711 aa13.68□□□□□ -0.22
SYNE1-222ENST00000474655 MRPL11Q9Y3B7 192 aaKnown RBP13.68□□□□□ -0.22
SYNE1-222ENST00000474655 STK24Q9Y6E0 443 aa13.68□□□□□ -0.22
SYNE1-222ENST00000474655 RBBP6Q7Z6E9 1792 aaKnown RBP13.68□□□□□ -0.22
SYNE1-222ENST00000474655 IGLV3-22A0A075B6J6 115 aa13.68□□□□□ -0.22
SYNE1-222ENST00000474655 KCNJ18B7U540 433 aa13.68□□□□□ -0.22
SYNE1-222ENST00000474655 TPM2P07951 284 aa13.68□□□□□ -0.22
SYNE1-222ENST00000474655 EEF1GP26641 437 aaKnown RBP13.68□□□□□ -0.22
SYNE1-222ENST00000474655 GHRHRQ02643 423 aa13.68□□□□□ -0.22
SYNE1-222ENST00000474655 PSMD2Q13200 908 aa13.68□□□□□ -0.22
SYNE1-222ENST00000474655 KCNJ12Q14500 433 aa13.68□□□□□ -0.22
SYNE1-222ENST00000474655 PRR16Q569H4 304 aa13.68□□□□□ -0.22
SYNE1-222ENST00000474655 KCTD17Q8N5Z5 321 aa13.68□□□□□ -0.22
SYNE1-222ENST00000474655 KIAA0895Q8NCT3 520 aa13.68□□□□□ -0.22
SYNE1-222ENST00000474655 GJA10Q969M2 543 aa13.68□□□□□ -0.22
SYNE1-222ENST00000474655 KIFC2Q96AC6 838 aa13.68□□□□□ -0.22
SYNE1-222ENST00000474655 ZNF341Q9BYN7 854 aa13.68□□□□□ -0.22
SYNE1-222ENST00000474655 ZNF112Q9UJU3 913 aa13.68□□□□□ -0.22
SYNE1-222ENST00000474655 PHIPQ8WWQ0 1821 aa13.67□□□□□ -0.22
SYNE1-222ENST00000474655 BICDL2A1A5D9 508 aa13.67□□□□□ -0.22
SYNE1-222ENST00000474655 TRIM49BA6NDI0 452 aa13.67□□□□□ -0.22
SYNE1-222ENST00000474655 USP27XA6NNY8 438 aa13.67□□□□□ -0.22
SYNE1-222ENST00000474655 GCOM1H8Y6P7 765 aaPredicted RBP13.67□□□□□ -0.22
SYNE1-222ENST00000474655 STX10O60499 249 aa13.67□□□□□ -0.22
SYNE1-222ENST00000474655 ICAM1P05362 532 aa13.67□□□□□ -0.22
SYNE1-222ENST00000474655 POLR2MP0CAP2 368 aa13.67□□□□□ -0.22
SYNE1-222ENST00000474655 TAL1P17542 331 aaPredicted RBP13.67□□□□□ -0.22
SYNE1-222ENST00000474655 HOXA13P31271 388 aaPredicted RBP13.67□□□□□ -0.22
SYNE1-222ENST00000474655 CCT6AP40227 531 aaKnown RBP13.67□□□□□ -0.22
SYNE1-222ENST00000474655 COPB1P53618 953 aaKnown RBP13.67□□□□□ -0.22
SYNE1-222ENST00000474655 KIF4BQ2VIQ3 1234 aa13.67□□□□□ -0.22
SYNE1-222ENST00000474655 CENPPQ6IPU0 288 aa13.67□□□□□ -0.22
SYNE1-222ENST00000474655 FCHSD1Q86WN1 690 aa13.67□□□□□ -0.22
SYNE1-222ENST00000474655 PRPF38AQ8NAV1 312 aaKnown RBP13.67□□□□□ -0.22
SYNE1-222ENST00000474655 ANKRD20A12PQ8NF67 263 aa13.67□□□□□ -0.22
SYNE1-222ENST00000474655 DDX12PQ92771 950 aa13.67□□□□□ -0.22
SYNE1-222ENST00000474655 P2RX5Q93086 422 aa13.67□□□□□ -0.22
SYNE1-222ENST00000474655 DNAJC19Q96DA6 116 aa13.67□□□□□ -0.22
SYNE1-222ENST00000474655 DUSP9Q99956 384 aaKnown RBP13.67□□□□□ -0.22
SYNE1-222ENST00000474655 FBXO28Q9NVF7 368 aa13.67□□□□□ -0.22
SYNE1-222ENST00000474655 ZNF536O15090 1300 aa13.67□□□□□ -0.22
SYNE1-222ENST00000474655 MSH4O15457 936 aa13.66□□□□□ -0.22
SYNE1-222ENST00000474655 FCER1AP12319 257 aa13.66□□□□□ -0.22
SYNE1-222ENST00000474655 RPA1P27694 616 aa13.66□□□□□ -0.22
SYNE1-222ENST00000474655 INPP5BP32019 993 aa13.66□□□□□ -0.22
SYNE1-222ENST00000474655 ZYXQ15942 572 aaKnown RBP13.66□□□□□ -0.22
SYNE1-222ENST00000474655 TBC1D10BQ4KMP7 808 aaPredicted RBP13.66□□□□□ -0.22
SYNE1-222ENST00000474655 HAUS3Q68CZ6 603 aa13.66□□□□□ -0.22
SYNE1-222ENST00000474655 LDHDQ86WU2 507 aa13.66□□□□□ -0.22
SYNE1-222ENST00000474655 GUF1Q8N442 669 aaKnown RBP13.66□□□□□ -0.22
SYNE1-222ENST00000474655 TBC1D5Q92609 795 aa13.66□□□□□ -0.22
SYNE1-222ENST00000474655 PANX2Q96RD6 677 aa13.66□□□□□ -0.22
SYNE1-222ENST00000474655 RLFQ13129 1914 aa13.66□□□□□ -0.22
SYNE1-222ENST00000474655 ASTN2O75129 1339 aaPredicted RBP13.66□□□□□ -0.22
SYNE1-222ENST00000474655 ZNF541Q9H0D2 1346 aa13.66□□□□□ -0.22
SYNE1-222ENST00000474655 ARHGAP6O43182 974 aa13.66□□□□□ -0.22
SYNE1-222ENST00000474655 COBLO75128 1261 aa13.66□□□□□ -0.22
SYNE1-222ENST00000474655 CFBP00751 764 aa13.66□□□□□ -0.22
SYNE1-222ENST00000474655 HSD17B4P51659 736 aa13.66□□□□□ -0.22
SYNE1-222ENST00000474655 PTPN21Q16825 1174 aa13.66□□□□□ -0.22
SYNE1-222ENST00000474655 CCDC174Q6PII3 467 aa13.66□□□□□ -0.22
SYNE1-222ENST00000474655 CCDC84Q86UT8 332 aaPredicted RBP13.66□□□□□ -0.22
SYNE1-222ENST00000474655 NLGN2Q8NFZ4 835 aa13.66□□□□□ -0.22
SYNE1-222ENST00000474655 HOOK2Q96ED9 719 aa13.66□□□□□ -0.22
SYNE1-222ENST00000474655 C16orf45Q96MC5 204 aaPredicted RBP13.66□□□□□ -0.22
SYNE1-222ENST00000474655 FEZ1Q99689 392 aa13.66□□□□□ -0.22
SYNE1-222ENST00000474655 VAV3Q9UKW4 847 aa13.66□□□□□ -0.22
SYNE1-222ENST00000474655 SCAF8Q9UPN6 1271 aaKnown RBP13.66□□□□□ -0.22
SYNE1-222ENST00000474655 GJA3Q9Y6H8 435 aa13.66□□□□□ -0.22
SYNE1-222ENST00000474655 LOXHD1Q8IVV2 1947 aa13.65□□□□□ -0.22
SYNE1-222ENST00000474655 N4BP3O15049 544 aa13.65□□□□□ -0.22
SYNE1-222ENST00000474655 MED24O75448 989 aa13.65□□□□□ -0.22
SYNE1-222ENST00000474655 SPATA31C1P0DKV0 1188 aa13.65□□□□□ -0.22
SYNE1-222ENST00000474655 TNNT1P13805 278 aa13.65□□□□□ -0.22
SYNE1-222ENST00000474655 FECHP22830 423 aa13.65□□□□□ -0.22
SYNE1-222ENST00000474655 GTF2F1P35269 517 aaKnown RBP eCLIP13.65□□□□□ -0.22
SYNE1-222ENST00000474655 NBPF12Q5TAG4 269 aaPredicted RBP13.65□□□□□ -0.22
SYNE1-222ENST00000474655 DCAF15Q66K64 600 aa13.65□□□□□ -0.22
SYNE1-222ENST00000474655 ANKRD40Q6AI12 368 aa13.65□□□□□ -0.22
SYNE1-222ENST00000474655 CATSPER3Q86XQ3 398 aa13.65□□□□□ -0.22
SYNE1-222ENST00000474655 SAMD3Q8N6K7 520 aa13.65□□□□□ -0.22
SYNE1-222ENST00000474655 MYRIPQ8NFW9 859 aa13.65□□□□□ -0.22
SYNE1-222ENST00000474655 ERMNQ8TAM6 284 aa13.65□□□□□ -0.22
SYNE1-222ENST00000474655 ZNF507Q8TCN5 953 aa13.65□□□□□ -0.22
SYNE1-222ENST00000474655 TRIM47Q96LD4 638 aa13.65□□□□□ -0.22
SYNE1-222ENST00000474655 SLF1Q9BQI6 1058 aa13.65□□□□□ -0.22
SYNE1-222ENST00000474655 WDR18Q9BV38 432 aa13.65□□□□□ -0.22
SYNE1-222ENST00000474655 SRRTQ9BXP5 876 aaKnown RBP13.65□□□□□ -0.22
SYNE1-222ENST00000474655 EHMT1Q9H9B1 1298 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms