RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 SMPD1P17405 629 aa17.41■□□□□ 0.38
LIMS1-212ENST00000474038 NEK4P51957 841 aa17.41■□□□□ 0.38
LIMS1-212ENST00000474038 AK2P54819 239 aa17.41■□□□□ 0.38
LIMS1-212ENST00000474038 GNASQ5JWF2 1037 aa17.41■□□□□ 0.38
LIMS1-212ENST00000474038 TYW1BQ6NUM6 668 aa17.41■□□□□ 0.38
LIMS1-212ENST00000474038 TLK2Q86UE8 772 aa17.41■□□□□ 0.38
LIMS1-212ENST00000474038 PCSK9Q8NBP7 692 aaKnown RBP17.41■□□□□ 0.38
LIMS1-212ENST00000474038 BADQ92934 168 aa17.41■□□□□ 0.38
LIMS1-212ENST00000474038 PHKBQ93100 1093 aa17.41■□□□□ 0.38
LIMS1-212ENST00000474038 PDCD2LQ9BRP1 358 aa17.41■□□□□ 0.38
LIMS1-212ENST00000474038 PSTPIP2Q9H939 334 aa17.41■□□□□ 0.38
LIMS1-212ENST00000474038 STXBP3O00186 592 aa17.4■□□□□ 0.38
LIMS1-212ENST00000474038 PRPF3O43395 683 aaKnown RBP17.4■□□□□ 0.38
LIMS1-212ENST00000474038 PPFIA3O75145 1194 aa17.4■□□□□ 0.38
LIMS1-212ENST00000474038 CLTBP09497 229 aa17.4■□□□□ 0.38
LIMS1-212ENST00000474038 ITGB8P26012 769 aa17.4■□□□□ 0.38
LIMS1-212ENST00000474038 NAPAP54920 295 aa17.4■□□□□ 0.38
LIMS1-212ENST00000474038 STK3Q13188 491 aa17.4■□□□□ 0.38
LIMS1-212ENST00000474038 STXBP2Q15833 593 aa17.4■□□□□ 0.38
LIMS1-212ENST00000474038 PFKFB3Q16875 520 aaPredicted RBP17.4■□□□□ 0.38
LIMS1-212ENST00000474038 IL31RAQ8NI17 732 aa17.4■□□□□ 0.38
LIMS1-212ENST00000474038 SMARCC2Q8TAQ2 1214 aa17.4■□□□□ 0.38
LIMS1-212ENST00000474038 CUL5Q93034 780 aa17.4■□□□□ 0.38
LIMS1-212ENST00000474038 GLT1D1Q96MS3 346 aa17.4■□□□□ 0.38
LIMS1-212ENST00000474038 C22orf23Q9BZE7 217 aa17.4■□□□□ 0.38
LIMS1-212ENST00000474038 WDR11Q9BZH6 1224 aa17.4■□□□□ 0.38
LIMS1-212ENST00000474038 BARHL2Q9NY43 387 aa17.4■□□□□ 0.38
LIMS1-212ENST00000474038 TPCN1Q9ULQ1 816 aa17.4■□□□□ 0.38
LIMS1-212ENST00000474038 hCG_1984214I3L0E3 225 aa17.39■□□□□ 0.37
LIMS1-212ENST00000474038 DYNC1LI2O43237 492 aaPredicted RBP17.39■□□□□ 0.37
LIMS1-212ENST00000474038 EIF3JO75822 258 aaKnown RBP17.39■□□□□ 0.37
LIMS1-212ENST00000474038 SCG2P13521 617 aa17.39■□□□□ 0.37
LIMS1-212ENST00000474038 NKX3-2P78367 333 aa17.39■□□□□ 0.37
LIMS1-212ENST00000474038 PGM5Q15124 567 aa17.39■□□□□ 0.37
LIMS1-212ENST00000474038 ANKRD1Q15327 319 aa17.39■□□□□ 0.37
LIMS1-212ENST00000474038 PKN1Q16512 942 aa17.39■□□□□ 0.37
LIMS1-212ENST00000474038 LRIT3Q3SXY7 679 aa17.39■□□□□ 0.37
LIMS1-212ENST00000474038 DUSP28Q4G0W2 176 aa17.39■□□□□ 0.37
LIMS1-212ENST00000474038 PPP1R18Q6NYC8 613 aa17.39■□□□□ 0.37
LIMS1-212ENST00000474038 VSIG10LQ86VR7 867 aa17.39■□□□□ 0.37
LIMS1-212ENST00000474038 ZNF713Q8N859 430 aaPredicted RBP17.39■□□□□ 0.37
LIMS1-212ENST00000474038 SCFD2Q8WU76 684 aa17.39■□□□□ 0.37
LIMS1-212ENST00000474038 VTI1AQ96AJ9 217 aa17.39■□□□□ 0.37
LIMS1-212ENST00000474038 KIF2CQ99661 725 aa17.39■□□□□ 0.37
LIMS1-212ENST00000474038 RNF26Q9BY78 433 aaPredicted RBP17.39■□□□□ 0.37
LIMS1-212ENST00000474038 FRMPD4Q14CM0 1322 aa17.39■□□□□ 0.37
LIMS1-212ENST00000474038 MYCLP12524 364 aaPredicted RBP17.38■□□□□ 0.37
LIMS1-212ENST00000474038 RBM25P49756 843 aaKnown RBP17.38■□□□□ 0.37
LIMS1-212ENST00000474038 FAAP100Q0VG06 881 aa17.38■□□□□ 0.37
LIMS1-212ENST00000474038 FSCN1Q16658 493 aaKnown RBP17.38■□□□□ 0.37
LIMS1-212ENST00000474038 UBE2SQ16763 222 aa17.38■□□□□ 0.37
LIMS1-212ENST00000474038 SEPT14Q6ZU15 432 aa17.38■□□□□ 0.37
LIMS1-212ENST00000474038 ANKRD33Q7Z3H0 272 aa17.38■□□□□ 0.37
LIMS1-212ENST00000474038 SLC26A6Q9BXS9 759 aa17.38■□□□□ 0.37
LIMS1-212ENST00000474038 AP5M1Q9H0R1 490 aa17.38■□□□□ 0.37
LIMS1-212ENST00000474038 ELP1O95163 1332 aa17.38■□□□□ 0.37
LIMS1-212ENST00000474038 CPLX1O14810 134 aa17.37■□□□□ 0.37
LIMS1-212ENST00000474038 KIAA0355O15063 1070 aa17.37■□□□□ 0.37
LIMS1-212ENST00000474038 PFKFB2O60825 505 aa17.37■□□□□ 0.37
LIMS1-212ENST00000474038 ARIH2O95376 493 aa17.37■□□□□ 0.37
LIMS1-212ENST00000474038 CCND2P30279 289 aa17.37■□□□□ 0.37
LIMS1-212ENST00000474038 AKAP17AQ02040 695 aaKnown RBP17.37■□□□□ 0.37
LIMS1-212ENST00000474038 SCRN1Q12765 414 aa17.37■□□□□ 0.37
LIMS1-212ENST00000474038 CCDC62Q6P9F0 684 aa17.37■□□□□ 0.37
LIMS1-212ENST00000474038 CXCL17Q6UXB2 119 aa17.37■□□□□ 0.37
LIMS1-212ENST00000474038 TOX2Q96NM4 488 aa17.37■□□□□ 0.37
LIMS1-212ENST00000474038 SLKQ9H2G2 1235 aaPredicted RBP17.37■□□□□ 0.37
LIMS1-212ENST00000474038 RIC8AQ9NPQ8 531 aa17.37■□□□□ 0.37
LIMS1-212ENST00000474038 TMEM39AQ9NV64 488 aa17.37■□□□□ 0.37
LIMS1-212ENST00000474038 Q9Y3F1 56 aa17.37■□□□□ 0.37
LIMS1-212ENST00000474038 LAMA2P24043 3122 aaKnown RBP17.36■□□□□ 0.37
LIMS1-212ENST00000474038 A0A0U1RQG5 324 aaPredicted RBP17.36■□□□□ 0.37
LIMS1-212ENST00000474038 SMCO2A6NFE2 343 aa17.36■□□□□ 0.37
LIMS1-212ENST00000474038 DCDC2CA8MYV0 355 aa17.36■□□□□ 0.37
LIMS1-212ENST00000474038 ARVCFO00192 962 aa17.36■□□□□ 0.37
LIMS1-212ENST00000474038 RGS20O76081 388 aa17.36■□□□□ 0.37
LIMS1-212ENST00000474038 TXNP10599 105 aaKnown RBP17.36■□□□□ 0.37
LIMS1-212ENST00000474038 CDK7P50613 346 aa17.36■□□□□ 0.37
LIMS1-212ENST00000474038 ADCY7P51828 1080 aa17.36■□□□□ 0.37
LIMS1-212ENST00000474038 TTLL4Q14679 1199 aa17.36■□□□□ 0.37
LIMS1-212ENST00000474038 C9orf50Q5SZB4 431 aa17.36■□□□□ 0.37
LIMS1-212ENST00000474038 ZFP91Q96JP5 570 aaPredicted RBP17.36■□□□□ 0.37
LIMS1-212ENST00000474038 NKRFO15226 690 aaKnown RBP eCLIP17.35■□□□□ 0.37
LIMS1-212ENST00000474038 LARGE1O95461 756 aa17.35■□□□□ 0.37
LIMS1-212ENST00000474038 RAG1P15918 1043 aa17.35■□□□□ 0.37
LIMS1-212ENST00000474038 MRPS9P82933 396 aaKnown RBP17.35■□□□□ 0.37
LIMS1-212ENST00000474038 SSRP1Q08945 709 aaKnown RBP17.35■□□□□ 0.37
LIMS1-212ENST00000474038 SHHQ15465 462 aa17.35■□□□□ 0.37
LIMS1-212ENST00000474038 ME3Q16798 604 aa17.35■□□□□ 0.37
LIMS1-212ENST00000474038 CPLX2Q6PUV4 134 aaKnown RBP17.35■□□□□ 0.37
LIMS1-212ENST00000474038 TEX2Q8IWB9 1127 aa17.35■□□□□ 0.37
LIMS1-212ENST00000474038 TRIM22Q8IYM9 498 aa17.35■□□□□ 0.37
LIMS1-212ENST00000474038 COPS5Q92905 334 aa17.35■□□□□ 0.37
LIMS1-212ENST00000474038 PCDHA6Q9UN73 950 aa17.35■□□□□ 0.37
LIMS1-212ENST00000474038 PCDHA8Q9Y5H6 950 aa17.35■□□□□ 0.37
LIMS1-212ENST00000474038 ESYT2A0FGR8 921 aa17.34■□□□□ 0.37
LIMS1-212ENST00000474038 SPDYE3A6NKU9 549 aa17.34■□□□□ 0.37
LIMS1-212ENST00000474038 EPHB4P54760 987 aa17.34■□□□□ 0.37
LIMS1-212ENST00000474038 LY6KQ17RY6 165 aa17.34■□□□□ 0.37
LIMS1-212ENST00000474038 PCNX4Q63HM2 1172 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms