RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 PANK4Q9NVE7 773 aa14.38□□□□□ -0.11
COL6A3-209ENST00000472056 USTQ9Y2C2 406 aa14.38□□□□□ -0.11
COL6A3-209ENST00000472056 V9GY48 417 aaPredicted RBP14.38□□□□□ -0.11
COL6A3-209ENST00000472056 AKNAD1Q5T1N1 836 aa14.38□□□□□ -0.11
COL6A3-209ENST00000472056 FAM186BQ8IYM0 893 aa14.38□□□□□ -0.11
COL6A3-209ENST00000472056 OSBPL9Q96SU4 736 aa14.38□□□□□ -0.11
COL6A3-209ENST00000472056 CDC42BPAQ5VT25 1732 aa14.38□□□□□ -0.11
COL6A3-209ENST00000472056 TFAP4Q01664 338 aa14.38□□□□□ -0.11
COL6A3-209ENST00000472056 PROM2Q8N271 834 aa14.38□□□□□ -0.11
COL6A3-209ENST00000472056 BLOC1S6Q9UL45 172 aa14.38□□□□□ -0.11
COL6A3-209ENST00000472056 B4E1Z4 1266 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 DEAF1O75398 565 aaPredicted RBP14.37□□□□□ -0.11
COL6A3-209ENST00000472056 PAMP19021 973 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 MRRFQ96E11 262 aaKnown RBP14.37□□□□□ -0.11
COL6A3-209ENST00000472056 BRIP1Q9BX63 1249 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 DNAJC17Q9NVM6 304 aaKnown RBP14.37□□□□□ -0.11
COL6A3-209ENST00000472056 PLB1Q6P1J6 1458 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 TYW5A2RUC4 315 aaKnown RBP14.37□□□□□ -0.11
COL6A3-209ENST00000472056 HGSO14964 777 aaPredicted RBP14.37□□□□□ -0.11
COL6A3-209ENST00000472056 RCN2Q14257 317 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 GNPTABQ3T906 1256 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 TBC1D23Q9NUY8 699 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 HESX1Q9UBX0 185 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 SNX5Q9Y5X3 404 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 A2MP01023 1474 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 SCG2P13521 617 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 CHST3Q7LGC8 479 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 MXD3Q9BW11 206 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 CARMIL3Q8ND23 1372 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 GSTA4O15217 222 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 TXKP42681 527 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 GRIN1Q05586 938 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 PLS1Q14651 629 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 BLIDQ8IZY5 108 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 PICK1Q9NRD5 415 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 FANCLQ9NW38 375 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 E7EWF7 191 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 H0Y626 953 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 TRIM16O95361 564 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 EHHADHQ08426 723 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 WAPLQ7Z5K2 1190 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 WDR62O43379 1518 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 SLC39A14Q15043 492 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 MIGA1Q8NAN2 632 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 CACTINQ8WUQ7 758 aaKnown RBP14.37□□□□□ -0.11
COL6A3-209ENST00000472056 MORC2Q9Y6X9 1032 aaPredicted RBP14.37□□□□□ -0.11
COL6A3-209ENST00000472056 MYOM2P54296 1465 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 GOLGA8JA6NMD2 632 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 HNRNPCL2B2RXH8 293 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 RFX1P22670 979 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 CA8P35219 290 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 DHX9Q08211 1270 aaKnown RBP14.37□□□□□ -0.11
COL6A3-209ENST00000472056 LZICQ8WZA0 190 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 TLK1Q9UKI8 766 aa14.37□□□□□ -0.11
COL6A3-209ENST00000472056 SGK1O00141 431 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 CCDC22O60826 627 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 ORC2Q13416 577 aaPredicted RBP14.36□□□□□ -0.11
COL6A3-209ENST00000472056 RNF26Q9BY78 433 aaPredicted RBP14.36□□□□□ -0.11
COL6A3-209ENST00000472056 ADGRF5Q8IZF2 1346 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 FAM83GA6ND36 823 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 XPOTO43592 962 aaKnown RBP14.36□□□□□ -0.11
COL6A3-209ENST00000472056 FOSP01100 380 aaPredicted RBP14.36□□□□□ -0.11
COL6A3-209ENST00000472056 MT-ND3P03897 115 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 PTPREP23469 700 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 DR1Q01658 176 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 ZBTB8OSQ8IWT0 167 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 POLKQ9UBT6 870 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 M0QZ92 97 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 CCDC159P0C7I6 412 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 GPT2Q8TD30 523 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 PHF23Q9BUL5 403 aaPredicted RBP14.36□□□□□ -0.11
COL6A3-209ENST00000472056 PITPNM3Q9BZ71 974 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 ABCC10Q5T3U5 1492 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 ESYT2A0FGR8 921 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 KRT38O76015 456 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 STAT2P52630 851 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 ME3Q16798 604 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 KCTD16Q68DU8 428 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 GPBP1Q86WP2 473 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 DESI2Q9BSY9 194 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 FAM133BQ5BKY9 247 aaKnown RBP14.36□□□□□ -0.11
COL6A3-209ENST00000472056 RAPH1Q70E73 1250 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 VSTM4Q8IW00 320 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 C17orf53Q8N3J3 647 aaPredicted RBP14.36□□□□□ -0.11
COL6A3-209ENST00000472056 SYT2Q8N9I0 419 aaPredicted RBP14.36□□□□□ -0.11
COL6A3-209ENST00000472056 CDCA7Q9BWT1 371 aaPredicted RBP14.36□□□□□ -0.11
COL6A3-209ENST00000472056 MAPK8IP1Q9UQF2 711 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 ATP8A1Q9Y2Q0 1164 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 GMNCA6NCL1 334 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 TJP3O95049 919 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 TAC1P20366 129 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 MED21Q13503 144 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 IQCB1Q15051 598 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 ZNF658Q5TYW1 1059 aaPredicted RBP14.36□□□□□ -0.11
COL6A3-209ENST00000472056 SKAP1Q86WV1 359 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 C3orf20Q8ND61 904 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 GOLGA8IPA6NC78 632 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 CD19P15391 556 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 ZNF212Q9UDV6 495 aa14.36□□□□□ -0.11
COL6A3-209ENST00000472056 APOBEC2Q9Y235 224 aaKnown RBP14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms