RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	CRTAC1	Q9NQ79	661 aa		5.47	□□□□□ -1.53
PTCD3-209	ENST00000472044		A0A1W2PQ27	194 aa		5.46	□□□□□ -1.54
PTCD3-209	ENST00000472044		A0A1W2PQ64	194 aa		5.46	□□□□□ -1.54
PTCD3-209	ENST00000472044		A0A1W2PQC6	194 aa		5.46	□□□□□ -1.54
PTCD3-209	ENST00000472044		A0A1W2PQD8	194 aa		5.46	□□□□□ -1.54
PTCD3-209	ENST00000472044	MSL3P1	P0C860	447 aa		5.46	□□□□□ -1.54
PTCD3-209	ENST00000472044	PNLIP	P16233	465 aa		5.46	□□□□□ -1.54
PTCD3-209	ENST00000472044	PRKCA	P17252	672 aa		5.46	□□□□□ -1.54
PTCD3-209	ENST00000472044	AFM	P43652	599 aa		5.46	□□□□□ -1.54
PTCD3-209	ENST00000472044	TIGD5	Q53EQ6	642 aa		5.46	□□□□□ -1.54
PTCD3-209	ENST00000472044	CNNM4	Q6P4Q7	775 aa		5.46	□□□□□ -1.54
PTCD3-209	ENST00000472044	ABHD17C	Q6PCB6	329 aa		5.46	□□□□□ -1.54
PTCD3-209	ENST00000472044	UBE2R2	Q712K3	238 aa	Predicted RBP	5.46	□□□□□ -1.54
PTCD3-209	ENST00000472044	DDX53	Q86TM3	631 aa	Known RBP	5.46	□□□□□ -1.54
PTCD3-209	ENST00000472044	KIF18B	Q86Y91	864 aa		5.46	□□□□□ -1.54
PTCD3-209	ENST00000472044	ZC3H7A	Q8IWR0	971 aa	Known RBP	5.46	□□□□□ -1.54
PTCD3-209	ENST00000472044	ABI1	Q8IZP0	508 aa		5.46	□□□□□ -1.54
PTCD3-209	ENST00000472044	NUP43	Q8NFH3	380 aa		5.46	□□□□□ -1.54
PTCD3-209	ENST00000472044	FBXW5	Q969U6	566 aa		5.46	□□□□□ -1.54
PTCD3-209	ENST00000472044	TRMT2B	Q96GJ1	504 aa	Known RBP	5.46	□□□□□ -1.54
PTCD3-209	ENST00000472044	CHAMP1	Q96JM3	812 aa		5.46	□□□□□ -1.54
PTCD3-209	ENST00000472044	PUS7	Q96PZ0	661 aa	Known RBP	5.46	□□□□□ -1.54
PTCD3-209	ENST00000472044	MTFR1L	Q9H019	292 aa		5.46	□□□□□ -1.54
PTCD3-209	ENST00000472044	RC3H2	Q9HBD1	1191 aa	Known RBP	5.46	□□□□□ -1.54
PTCD3-209	ENST00000472044	ZFP64	Q9NPA5	681 aa		5.46	□□□□□ -1.54
PTCD3-209	ENST00000472044	CLDND1	Q9NY35	253 aa		5.46	□□□□□ -1.54
PTCD3-209	ENST00000472044	MARCH2	Q9P0N8	246 aa		5.46	□□□□□ -1.54
PTCD3-209	ENST00000472044	PPARGC1A	Q9UBK2	798 aa	Known RBP	5.46	□□□□□ -1.54
PTCD3-209	ENST00000472044	C22orf46	C9J442	243 aa		5.45	□□□□□ -1.54
PTCD3-209	ENST00000472044	FUCA1	P04066	466 aa		5.45	□□□□□ -1.54
PTCD3-209	ENST00000472044	JMJD7	P0C870	316 aa		5.45	□□□□□ -1.54
PTCD3-209	ENST00000472044	FPR2	P25090	351 aa		5.45	□□□□□ -1.54
PTCD3-209	ENST00000472044	SOX5	P35711	763 aa		5.45	□□□□□ -1.54
PTCD3-209	ENST00000472044	CYP4F8	P98187	520 aa		5.45	□□□□□ -1.54
PTCD3-209	ENST00000472044	KIR3DS1	Q14943	382 aa		5.45	□□□□□ -1.54
PTCD3-209	ENST00000472044	CFAP100	Q494V2	611 aa		5.45	□□□□□ -1.54
PTCD3-209	ENST00000472044	FAM47C	Q5HY64	1035 aa		5.45	□□□□□ -1.54
PTCD3-209	ENST00000472044	HABP4	Q5JVS0	413 aa	Known RBP	5.45	□□□□□ -1.54
PTCD3-209	ENST00000472044	CDCA2	Q69YH5	1023 aa	Predicted RBP	5.45	□□□□□ -1.54
PTCD3-209	ENST00000472044	ATG4D	Q86TL0	474 aa	Predicted RBP	5.45	□□□□□ -1.54
PTCD3-209	ENST00000472044	TEX2	Q8IWB9	1127 aa		5.45	□□□□□ -1.54
PTCD3-209	ENST00000472044	PANK1	Q8TE04	598 aa		5.45	□□□□□ -1.54
PTCD3-209	ENST00000472044	WNK4	Q96J92	1243 aa		5.45	□□□□□ -1.54
PTCD3-209	ENST00000472044	EPB41L1	Q9H4G0	881 aa		5.45	□□□□□ -1.54
PTCD3-209	ENST00000472044	C19orf44	Q9H6X5	657 aa		5.45	□□□□□ -1.54
PTCD3-209	ENST00000472044	PCDH12	Q9NPG4	1184 aa		5.45	□□□□□ -1.54
PTCD3-209	ENST00000472044	SAMD15	Q9P1V8	674 aa		5.45	□□□□□ -1.54
PTCD3-209	ENST00000472044	NOP58	Q9Y2X3	529 aa	Known RBP	5.45	□□□□□ -1.54
PTCD3-209	ENST00000472044	RWDD3	Q9Y3V2	267 aa		5.45	□□□□□ -1.54
PTCD3-209	ENST00000472044	COL4A3BP	Q9Y5P4	624 aa		5.45	□□□□□ -1.54
PTCD3-209	ENST00000472044	SCO2	A0A1W2PP80	73 aa		5.44	□□□□□ -1.54
PTCD3-209	ENST00000472044	SRGAP3	O43295	1099 aa		5.44	□□□□□ -1.54
PTCD3-209	ENST00000472044	SRGAP2C	P0DJJ0	459 aa		5.44	□□□□□ -1.54
PTCD3-209	ENST00000472044	GLI4	P10075	376 aa		5.44	□□□□□ -1.54
PTCD3-209	ENST00000472044	POU3F3	P20264	500 aa	Predicted RBP	5.44	□□□□□ -1.54
PTCD3-209	ENST00000472044	IBSP	P21815	317 aa	Predicted RBP	5.44	□□□□□ -1.54
PTCD3-209	ENST00000472044	TRHR	P34981	398 aa	Predicted RBP	5.44	□□□□□ -1.54
PTCD3-209	ENST00000472044	SLC6A11	P48066	632 aa		5.44	□□□□□ -1.54
PTCD3-209	ENST00000472044	MECP2	P51608	486 aa	Known RBP	5.44	□□□□□ -1.54
PTCD3-209	ENST00000472044	LACTB	P83111	547 aa	Predicted RBP	5.44	□□□□□ -1.54
PTCD3-209	ENST00000472044	AMPD3	Q01432	767 aa		5.44	□□□□□ -1.54
PTCD3-209	ENST00000472044	OTOP3	Q7RTS5	596 aa		5.44	□□□□□ -1.54
PTCD3-209	ENST00000472044	OVCH1	Q7RTY7	1134 aa		5.44	□□□□□ -1.54
PTCD3-209	ENST00000472044	IGSF22	Q8N9C0	903 aa		5.44	□□□□□ -1.54
PTCD3-209	ENST00000472044	NETO2	Q8NC67	525 aa		5.44	□□□□□ -1.54
PTCD3-209	ENST00000472044	ABHD4	Q8TB40	342 aa		5.44	□□□□□ -1.54
PTCD3-209	ENST00000472044	JAM3	Q9BX67	310 aa		5.44	□□□□□ -1.54
PTCD3-209	ENST00000472044	TNFRSF12A	Q9NP84	129 aa		5.44	□□□□□ -1.54
PTCD3-209	ENST00000472044	BTG4	Q9NY30	223 aa		5.44	□□□□□ -1.54
PTCD3-209	ENST00000472044	FBLN5	Q9UBX5	448 aa		5.44	□□□□□ -1.54
PTCD3-209	ENST00000472044	GPR160	Q9UJ42	338 aa		5.44	□□□□□ -1.54
PTCD3-209	ENST00000472044	COA3	Q9Y2R0	106 aa	Predicted RBP	5.44	□□□□□ -1.54
PTCD3-209	ENST00000472044	CCDC66	A2RUB6	948 aa		5.43	□□□□□ -1.54
PTCD3-209	ENST00000472044	DGKI	O75912	1065 aa		5.43	□□□□□ -1.54
PTCD3-209	ENST00000472044	GLRX3	O76003	335 aa	Known RBP	5.43	□□□□□ -1.54
PTCD3-209	ENST00000472044	PYGM	P11217	842 aa		5.43	□□□□□ -1.54
PTCD3-209	ENST00000472044	ARL4A	P40617	200 aa		5.43	□□□□□ -1.54
PTCD3-209	ENST00000472044	NEK4	P51957	841 aa		5.43	□□□□□ -1.54
PTCD3-209	ENST00000472044	ERVFRD-1	P60508	538 aa		5.43	□□□□□ -1.54
PTCD3-209	ENST00000472044	ST5	P78524	1137 aa		5.43	□□□□□ -1.54
PTCD3-209	ENST00000472044	SPIRE1	Q08AE8	756 aa		5.43	□□□□□ -1.54
PTCD3-209	ENST00000472044	PCBP1	Q15365	356 aa	Known RBP eCLIP	5.43	□□□□□ -1.54
PTCD3-209	ENST00000472044	DHCR24	Q15392	516 aa		5.43	□□□□□ -1.54
PTCD3-209	ENST00000472044	CRY1	Q16526	586 aa		5.43	□□□□□ -1.54
PTCD3-209	ENST00000472044	EMC4	Q5J8M3	183 aa		5.43	□□□□□ -1.54
PTCD3-209	ENST00000472044	PIK3R6	Q5UE93	754 aa		5.43	□□□□□ -1.54
PTCD3-209	ENST00000472044	WWC2	Q6AWC2	1192 aa		5.43	□□□□□ -1.54
PTCD3-209	ENST00000472044	DDX46	Q7L014	1031 aa	Known RBP	5.43	□□□□□ -1.54
PTCD3-209	ENST00000472044	AFAP1L2	Q8N4X5	818 aa		5.43	□□□□□ -1.54
PTCD3-209	ENST00000472044	USP33	Q8TEY7	942 aa		5.43	□□□□□ -1.54
PTCD3-209	ENST00000472044	SLC6A20	Q9NP91	592 aa		5.43	□□□□□ -1.54
PTCD3-209	ENST00000472044	YBX2	Q9Y2T7	364 aa	Known RBP	5.43	□□□□□ -1.54
PTCD3-209	ENST00000472044	COQ6	Q9Y2Z9	468 aa		5.43	□□□□□ -1.54
PTCD3-209	ENST00000472044	OAS3	Q9Y6K5	1087 aa	Known RBP	5.43	□□□□□ -1.54
PTCD3-209	ENST00000472044		A0A1W2PQJ5	194 aa		5.42	□□□□□ -1.54
PTCD3-209	ENST00000472044	CBX4	O00257	560 aa		5.42	□□□□□ -1.54
PTCD3-209	ENST00000472044	TRAF5	O00463	557 aa		5.42	□□□□□ -1.54
PTCD3-209	ENST00000472044	TADA3	O75528	432 aa		5.42	□□□□□ -1.54
PTCD3-209	ENST00000472044	GPR19	Q15760	415 aa		5.42	□□□□□ -1.54
PTCD3-209	ENST00000472044	CHRNA2	Q15822	529 aa		5.42	□□□□□ -1.54

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