RNA–Protein interactions for RNA: ENST00000471307.6

CCDC39-202, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 783 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-202ENST00000471307 LSAMPQ13449 338 aa8.74□□□□□ -1.01
CCDC39-202ENST00000471307 CHRNA2Q15822 529 aa8.74□□□□□ -1.01
CCDC39-202ENST00000471307 CEP68Q76N32 757 aa8.74□□□□□ -1.01
CCDC39-202ENST00000471307 SP8Q8IXZ3 490 aa8.74□□□□□ -1.01
CCDC39-202ENST00000471307 TRMT2BQ96GJ1 504 aaKnown RBP8.74□□□□□ -1.01
CCDC39-202ENST00000471307 AARSD1Q9BTE6 412 aaKnown RBP8.74□□□□□ -1.01
CCDC39-202ENST00000471307 TANGO6Q9C0B7 1094 aa8.74□□□□□ -1.01
CCDC39-202ENST00000471307 ZCCHC4Q9H5U6 513 aa8.74□□□□□ -1.01
CCDC39-202ENST00000471307 COA3Q9Y2R0 106 aaPredicted RBP8.74□□□□□ -1.01
CCDC39-202ENST00000471307 MSRB2Q9Y3D2 182 aa8.74□□□□□ -1.01
CCDC39-202ENST00000471307 PMF1-BGLAPU3KQ54 211 aa8.74□□□□□ -1.01
CCDC39-202ENST00000471307 BMP7P18075 431 aa8.73□□□□□ -1.01
CCDC39-202ENST00000471307 BCL6P41182 706 aa8.73□□□□□ -1.01
CCDC39-202ENST00000471307 GRIA2P42262 883 aa8.73□□□□□ -1.01
CCDC39-202ENST00000471307 DENND5AQ6IQ26 1287 aa8.73□□□□□ -1.01
CCDC39-202ENST00000471307 RSPO2Q6UXX9 243 aaPredicted RBP8.73□□□□□ -1.01
CCDC39-202ENST00000471307 NLRP10Q86W26 655 aa8.73□□□□□ -1.01
CCDC39-202ENST00000471307 MIB1Q86YT6 1006 aa8.73□□□□□ -1.01
CCDC39-202ENST00000471307 FNIP1Q8TF40 1166 aa8.73□□□□□ -1.01
CCDC39-202ENST00000471307 IER2Q9BTL4 223 aa8.73□□□□□ -1.01
CCDC39-202ENST00000471307 LUC7LQ9NQ29 371 aaKnown RBP8.73□□□□□ -1.01
CCDC39-202ENST00000471307 ADAMTS20P59510 1910 aa8.73□□□□□ -1.01
CCDC39-202ENST00000471307 SASH1O94885 1247 aa8.72□□□□□ -1.01
CCDC39-202ENST00000471307 FGFR1P11362 822 aa8.72□□□□□ -1.01
CCDC39-202ENST00000471307 FPR2P25090 351 aa8.72□□□□□ -1.01
CCDC39-202ENST00000471307 LCE1DQ5T752 114 aa8.72□□□□□ -1.01
CCDC39-202ENST00000471307 GPR27Q9NS67 375 aa8.72□□□□□ -1.01
CCDC39-202ENST00000471307 PCDHA2Q9Y5H9 948 aa8.72□□□□□ -1.01
CCDC39-202ENST00000471307 SGSM2O43147 1006 aa8.71□□□□□ -1.02
CCDC39-202ENST00000471307 DLX3O60479 287 aa8.71□□□□□ -1.02
CCDC39-202ENST00000471307 MC3RP41968 323 aa8.71□□□□□ -1.02
CCDC39-202ENST00000471307 VWA3BQ502W6 1294 aa8.71□□□□□ -1.02
CCDC39-202ENST00000471307 ETV3LQ6ZN32 361 aa8.71□□□□□ -1.02
CCDC39-202ENST00000471307 SAPCD2Q86UD0 394 aa8.71□□□□□ -1.02
CCDC39-202ENST00000471307 HIRIP3Q9BW71 556 aaPredicted RBP8.71□□□□□ -1.02
CCDC39-202ENST00000471307 BCAS3Q9H6U6 928 aa8.71□□□□□ -1.02
CCDC39-202ENST00000471307 ZNF652Q9Y2D9 606 aa8.71□□□□□ -1.02
CCDC39-202ENST00000471307 SIT1Q9Y3P8 196 aa8.71□□□□□ -1.02
CCDC39-202ENST00000471307 SH3D21A4FU49 640 aa8.7□□□□□ -1.02
CCDC39-202ENST00000471307 FFAR3O14843 346 aa8.7□□□□□ -1.02
CCDC39-202ENST00000471307 PLA2G1BP04054 148 aaKnown RBP8.7□□□□□ -1.02
CCDC39-202ENST00000471307 LCE4AQ5TA78 99 aa8.7□□□□□ -1.02
CCDC39-202ENST00000471307 LILRA6Q6PI73 481 aa8.7□□□□□ -1.02
CCDC39-202ENST00000471307 SMARCC2Q8TAQ2 1214 aa8.7□□□□□ -1.02
CCDC39-202ENST00000471307 NGRNQ9NPE2 291 aaKnown RBP8.7□□□□□ -1.02
CCDC39-202ENST00000471307 ARHGEF4Q9NR80 690 aa8.7□□□□□ -1.02
CCDC39-202ENST00000471307 CYP2C8P10632 490 aa8.69□□□□□ -1.02
CCDC39-202ENST00000471307 LCP1P13796 627 aa8.69□□□□□ -1.02
CCDC39-202ENST00000471307 HOXA5P20719 270 aa8.69□□□□□ -1.02
CCDC39-202ENST00000471307 RASGRF1Q13972 1273 aa8.69□□□□□ -1.02
CCDC39-202ENST00000471307 DPH6Q7L8W6 267 aa8.69□□□□□ -1.02
CCDC39-202ENST00000471307 MILR1Q7Z6M3 343 aa8.69□□□□□ -1.02
CCDC39-202ENST00000471307 ZC3H18Q86VM9 953 aaKnown RBP8.69□□□□□ -1.02
CCDC39-202ENST00000471307 TP53I13Q8NBR0 393 aaPredicted RBP8.69□□□□□ -1.02
CCDC39-202ENST00000471307 DCAF4Q8WV16 495 aa8.69□□□□□ -1.02
CCDC39-202ENST00000471307 CHAMP1Q96JM3 812 aa8.69□□□□□ -1.02
CCDC39-202ENST00000471307 ZFYVE21Q9BQ24 234 aa8.69□□□□□ -1.02
CCDC39-202ENST00000471307 CCDC113Q9H0I3 377 aa8.69□□□□□ -1.02
CCDC39-202ENST00000471307 EPB41L1Q9H4G0 881 aa8.69□□□□□ -1.02
CCDC39-202ENST00000471307 SIRPGQ9P1W8 387 aa8.69□□□□□ -1.02
CCDC39-202ENST00000471307 PALD1Q9ULE6 856 aa8.69□□□□□ -1.02
CCDC39-202ENST00000471307 TRAV20A0A0B4J274 112 aa8.68□□□□□ -1.02
CCDC39-202ENST00000471307 HGSO14964 777 aaPredicted RBP8.68□□□□□ -1.02
CCDC39-202ENST00000471307 PDPK1O15530 556 aa8.68□□□□□ -1.02
CCDC39-202ENST00000471307 EMC4Q5J8M3 183 aa8.68□□□□□ -1.02
CCDC39-202ENST00000471307 LINC00482Q8N8I6 264 aa8.68□□□□□ -1.02
CCDC39-202ENST00000471307 CLDND1Q9NY35 253 aa8.68□□□□□ -1.02
CCDC39-202ENST00000471307 PPP1R1BQ9UD71 204 aaPredicted RBP8.68□□□□□ -1.02
CCDC39-202ENST00000471307 FBXL7Q9UJT9 491 aa8.68□□□□□ -1.02
CCDC39-202ENST00000471307 MAFKO60675 156 aa8.67□□□□□ -1.02
CCDC39-202ENST00000471307 DGKIO75912 1065 aa8.67□□□□□ -1.02
CCDC39-202ENST00000471307 PABPC1P11940 636 aaKnown RBP8.67□□□□□ -1.02
CCDC39-202ENST00000471307 CTSWP56202 376 aa8.67□□□□□ -1.02
CCDC39-202ENST00000471307 VMACQ2NL98 169 aa8.67□□□□□ -1.02
CCDC39-202ENST00000471307 NSMFQ6X4W1 530 aa8.67□□□□□ -1.02
CCDC39-202ENST00000471307 FAM126BQ8IXS8 530 aa8.67□□□□□ -1.02
CCDC39-202ENST00000471307 XYLT2Q9H1B5 865 aa8.67□□□□□ -1.02
CCDC39-202ENST00000471307 PRODHO43272 600 aa8.66□□□□□ -1.02
CCDC39-202ENST00000471307 C8BP07358 591 aa8.66□□□□□ -1.02
CCDC39-202ENST00000471307 DLX2Q07687 328 aaPredicted RBP8.66□□□□□ -1.02
CCDC39-202ENST00000471307 CYP4F22Q6NT55 531 aa8.66□□□□□ -1.02
CCDC39-202ENST00000471307 LIPIQ6XZB0 460 aa8.66□□□□□ -1.02
CCDC39-202ENST00000471307 USP53Q70EK8 1073 aa8.66□□□□□ -1.02
CCDC39-202ENST00000471307 PHOSPHO1Q8TCT1 267 aa8.66□□□□□ -1.02
CCDC39-202ENST00000471307 PHF20Q9BVI0 1012 aa8.66□□□□□ -1.02
CCDC39-202ENST00000471307 SPATA9Q9BWV2 254 aa8.66□□□□□ -1.02
CCDC39-202ENST00000471307 CDIP1Q9H305 208 aa8.66□□□□□ -1.02
CCDC39-202ENST00000471307 TADA3O75528 432 aa8.65□□□□□ -1.02
CCDC39-202ENST00000471307 KCNC1P48547 511 aa8.65□□□□□ -1.02
CCDC39-202ENST00000471307 SLURP1P55000 103 aa8.65□□□□□ -1.02
CCDC39-202ENST00000471307 RBL2Q08999 1139 aa8.65□□□□□ -1.02
CCDC39-202ENST00000471307 STEAP3Q658P3 488 aa8.65□□□□□ -1.02
CCDC39-202ENST00000471307 LRP10Q7Z4F1 713 aa8.65□□□□□ -1.02
CCDC39-202ENST00000471307 OSBP2Q969R2 916 aa8.65□□□□□ -1.02
CCDC39-202ENST00000471307 DDX11Q96FC9 970 aa8.65□□□□□ -1.02
CCDC39-202ENST00000471307 RTEL1Q9NZ71 1219 aa8.65□□□□□ -1.02
CCDC39-202ENST00000471307 IFRD2Q12894 506 aaPredicted RBP8.64□□□□□ -1.03
CCDC39-202ENST00000471307 SF3A1Q15459 793 aaKnown RBP8.64□□□□□ -1.03
CCDC39-202ENST00000471307 MTERF2Q49AM1 385 aa8.64□□□□□ -1.03
CCDC39-202ENST00000471307 STYK1Q6J9G0 422 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms