RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 CARD6Q9BX69 1037 aa9.5□□□□□ -0.89
HPS4-209ENST00000466781 GOLGA8QA0A0J9YX86 632 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 GOLGA8OA6NCC3 632 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 USP17L12C9JPN9 530 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 USP17L21D6R901 530 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 GOLGA8NF8WBI6 632 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 DDAH1O94760 285 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 TTBK2Q6IQ55 1244 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 BBOF1Q8ND07 529 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 MAD1L1Q9Y6D9 718 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 KRIT1O00522 736 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 KCNK3O14649 394 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 ZNF75DP51815 510 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 PPARDQ03181 441 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 TRMT44Q8IYL2 757 aaKnown RBP9.49□□□□□ -0.89
HPS4-209ENST00000466781 SYNE4Q8N205 404 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 PPM1KQ8N3J5 372 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 ATP6V1E2Q96A05 226 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 IFT122Q9HBG6 1241 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 SLC38A10Q9HBR0 1119 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 ADD3Q9UEY8 706 aaKnown RBP9.49□□□□□ -0.89
HPS4-209ENST00000466781 FRMPD1Q5SYB0 1578 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 F8W8V4 182 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 SLC4A1P02730 911 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 TBC1D9BQ66K14 1250 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 PDZD8Q8NEN9 1154 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 NLRP7Q8WX94 980 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 CBX8Q9HC52 389 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 SMYD2Q9NRG4 433 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 AXIN2Q9Y2T1 843 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 DLC1Q96QB1 1528 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 EIF3CLB5ME19 914 aaKnown RBP9.49□□□□□ -0.89
HPS4-209ENST00000466781 THAP12O43422 761 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 TTC4O95801 387 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 GOLGA8HP0CJ92 632 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 ARHGAP25P42331 645 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 NSFP46459 744 aaKnown RBP9.49□□□□□ -0.89
HPS4-209ENST00000466781 MFAP3P55082 362 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 MKRN3Q13064 507 aaKnown RBP9.49□□□□□ -0.89
HPS4-209ENST00000466781 CAPN12Q6ZSI9 719 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 CACTINQ8WUQ7 758 aaKnown RBP9.49□□□□□ -0.89
HPS4-209ENST00000466781 ARHGEF1Q92888 912 aaKnown RBP9.49□□□□□ -0.89
HPS4-209ENST00000466781 CABS1Q96KC9 395 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 EIF3CQ99613 913 aaKnown RBP9.49□□□□□ -0.89
HPS4-209ENST00000466781 COA1Q9GZY4 146 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 ARMCX3Q9UH62 379 aaPredicted RBP9.49□□□□□ -0.89
HPS4-209ENST00000466781 A0A1B0GUA9 196 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 PPP2R5EQ16537 467 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 TTC30AQ86WT1 665 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 CCDC51Q96ER9 411 aa9.49□□□□□ -0.89
HPS4-209ENST00000466781 OLA1Q9NTK5 396 aaKnown RBP9.49□□□□□ -0.89
HPS4-209ENST00000466781 PPFIA2O75334 1257 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 PDE8BO95263 885 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 CTNNA1P35221 906 aaKnown RBP9.48□□□□□ -0.89
HPS4-209ENST00000466781 ATP6V0A1Q93050 837 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 SLC10A4Q96EP9 437 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 RUNDC3BQ96NL0 473 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 TLR7Q9NYK1 1049 aaKnown RBP9.48□□□□□ -0.89
HPS4-209ENST00000466781 CPSF2Q9P2I0 782 aaKnown RBP9.48□□□□□ -0.89
HPS4-209ENST00000466781 ZNF215Q9UL58 517 aaPredicted RBP9.48□□□□□ -0.89
HPS4-209ENST00000466781 ZMYM6O95789 1325 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 M0R2C6 588 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 U2AF2P26368 475 aaKnown RBP eCLIP9.48□□□□□ -0.891e-6■■□□□ 13.6
HPS4-209ENST00000466781 DCLK2Q8N568 766 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 PNMA1Q8ND90 353 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 TRIM58Q8NG06 486 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 PI4K2BQ8TCG2 481 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 NACC1Q96RE7 527 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 METTL14Q9HCE5 456 aaKnown RBP9.48□□□□□ -0.89
HPS4-209ENST00000466781 NVLO15381 856 aaKnown RBP9.48□□□□□ -0.89
HPS4-209ENST00000466781 ELF1P32519 619 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 CCDC38Q502W7 563 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 BARGINQ6ZT62 677 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 PLEKHA4Q9H4M7 779 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 RABEP2Q9H5N1 569 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 LARSQ9P2J5 1176 aaKnown RBP9.48□□□□□ -0.89
HPS4-209ENST00000466781 STK38LQ9Y2H1 464 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 ABCC4O15439 1325 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 CYP27B1O15528 508 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 SMIM24O75264 130 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 SF3A3Q12874 501 aaKnown RBP eCLIP9.48□□□□□ -0.899e-7■■■■□ 22
HPS4-209ENST00000466781 MYLK4Q86YV6 388 aaPredicted RBP9.48□□□□□ -0.89
HPS4-209ENST00000466781 IFNL3Q8IZI9 196 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 CCDC127Q96BQ5 260 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 ZNF577Q9BSK1 485 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 Q9H521 79 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 LRRIQ1Q96JM4 1722 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 WDR64B1ANS9 1081 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 KLRF2D3W0D1 207 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 GRIN3BO60391 1043 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 CLNS1AP54105 237 aaKnown RBP9.48□□□□□ -0.89
HPS4-209ENST00000466781 C1orf228Q6PIY5 440 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 LRRC43Q8N309 656 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 TAB3Q8N5C8 712 aaPredicted RBP9.48□□□□□ -0.89
HPS4-209ENST00000466781 BSDC1Q9NW68 430 aaPredicted RBP9.48□□□□□ -0.89
HPS4-209ENST00000466781 ITM2BQ9Y287 266 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 HYOU1Q9Y4L1 999 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 MED23Q9ULK4 1368 aa9.48□□□□□ -0.89
HPS4-209ENST00000466781 FOSP01100 380 aaPredicted RBP9.47□□□□□ -0.89
HPS4-209ENST00000466781 VPS41P49754 854 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms