RNA–Protein interactions for RNA: ENST00000466541.1

SHROOM3-202, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 628 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-202ENST00000466541 PCDHA8Q9Y5H6 950 aa13.81□□□□□ -0.2
SHROOM3-202ENST00000466541 MRVI1Q9Y6F6 885 aa13.81□□□□□ -0.2
SHROOM3-202ENST00000466541 hCG_1984214I3L0E3 225 aa13.8□□□□□ -0.2
SHROOM3-202ENST00000466541 PIK3CDO00329 1044 aa13.8□□□□□ -0.2
SHROOM3-202ENST00000466541 DNM1LO00429 736 aa13.8□□□□□ -0.2
SHROOM3-202ENST00000466541 DEXIO95424 95 aa13.8□□□□□ -0.2
SHROOM3-202ENST00000466541 NLRP5P59047 1200 aa13.8□□□□□ -0.2
SHROOM3-202ENST00000466541 GHRHRQ02643 423 aa13.8□□□□□ -0.2
SHROOM3-202ENST00000466541 TTLL4Q14679 1199 aa13.8□□□□□ -0.2
SHROOM3-202ENST00000466541 RABEP1Q15276 862 aa13.8□□□□□ -0.2
SHROOM3-202ENST00000466541 KCNA10Q16322 511 aa13.8□□□□□ -0.2
SHROOM3-202ENST00000466541 DUSP28Q4G0W2 176 aa13.8□□□□□ -0.2
SHROOM3-202ENST00000466541 PPP1R18Q6NYC8 613 aa13.8□□□□□ -0.2
SHROOM3-202ENST00000466541 UBE2Q1Q7Z7E8 422 aa13.8□□□□□ -0.2
SHROOM3-202ENST00000466541 VSIG10LQ86VR7 867 aa13.8□□□□□ -0.2
SHROOM3-202ENST00000466541 ZNF713Q8N859 430 aaPredicted RBP13.8□□□□□ -0.2
SHROOM3-202ENST00000466541 OR6J1Q8NGC5 347 aa13.8□□□□□ -0.2
SHROOM3-202ENST00000466541 CCDC12Q8WUD4 166 aaPredicted RBP13.8□□□□□ -0.2
SHROOM3-202ENST00000466541 TBC1D32Q96NH3 1257 aa13.8□□□□□ -0.2
SHROOM3-202ENST00000466541 C6orf50Q9HD87 102 aa13.8□□□□□ -0.2
SHROOM3-202ENST00000466541 PDE4DIPQ5VU43 2346 aa13.8□□□□□ -0.2
SHROOM3-202ENST00000466541 DOCK5Q9H7D0 1870 aa13.79□□□□□ -0.2
SHROOM3-202ENST00000466541 ADAMTS3O15072 1205 aa13.79□□□□□ -0.2
SHROOM3-202ENST00000466541 ADAMTS4O75173 837 aa13.79□□□□□ -0.2
SHROOM3-202ENST00000466541 ARIH2O95376 493 aa13.79□□□□□ -0.2
SHROOM3-202ENST00000466541 CHMP4BP1P59074 171 aa13.79□□□□□ -0.2
SHROOM3-202ENST00000466541 FSCN1Q16658 493 aaKnown RBP13.79□□□□□ -0.2
SHROOM3-202ENST00000466541 CCDC83Q8IWF9 413 aa13.79□□□□□ -0.2
SHROOM3-202ENST00000466541 GTF3C6Q969F1 213 aa13.79□□□□□ -0.2
SHROOM3-202ENST00000466541 HTATIP2Q9BUP3 242 aa13.79□□□□□ -0.2
SHROOM3-202ENST00000466541 EHMT1Q9H9B1 1298 aa13.79□□□□□ -0.2
SHROOM3-202ENST00000466541 ORC3Q9UBD5 711 aaPredicted RBP13.79□□□□□ -0.2
SHROOM3-202ENST00000466541 GNEQ9Y223 722 aaKnown RBP13.79□□□□□ -0.2
SHROOM3-202ENST00000466541 RBM47A0AV96 593 aaKnown RBP13.78□□□□□ -0.2
SHROOM3-202ENST00000466541 ST18O60284 1047 aa13.78□□□□□ -0.2
SHROOM3-202ENST00000466541 CTDNEP1O95476 244 aa13.78□□□□□ -0.2
SHROOM3-202ENST00000466541 CAPN2P17655 700 aa13.78□□□□□ -0.2
SHROOM3-202ENST00000466541 GJA9P57773 515 aa13.78□□□□□ -0.2
SHROOM3-202ENST00000466541 MRPS9P82933 396 aaKnown RBP13.78□□□□□ -0.2
SHROOM3-202ENST00000466541 C7orf61Q8IZ16 206 aa13.78□□□□□ -0.2
SHROOM3-202ENST00000466541 CCDC148Q8NFR7 591 aa13.78□□□□□ -0.2
SHROOM3-202ENST00000466541 RASGRP4Q8TDF6 673 aa13.78□□□□□ -0.2
SHROOM3-202ENST00000466541 GLT8D2Q9H1C3 349 aa13.78□□□□□ -0.2
SHROOM3-202ENST00000466541 PKD2L1Q9P0L9 805 aa13.78□□□□□ -0.2
SHROOM3-202ENST00000466541 KCNJ14Q9UNX9 436 aa13.78□□□□□ -0.2
SHROOM3-202ENST00000466541 ALPK3Q96L96 1907 aa13.78□□□□□ -0.2
SHROOM3-202ENST00000466541 A0A1W2PQ45 241 aaPredicted RBP13.77□□□□□ -0.21
SHROOM3-202ENST00000466541 A0A1W2PQY0 241 aa13.77□□□□□ -0.21
SHROOM3-202ENST00000466541 EVI5O60447 810 aa13.77□□□□□ -0.21
SHROOM3-202ENST00000466541 JAK2O60674 1132 aa13.77□□□□□ -0.21
SHROOM3-202ENST00000466541 RGS20O76081 388 aa13.77□□□□□ -0.21
SHROOM3-202ENST00000466541 ASGR1P07306 291 aa13.77□□□□□ -0.21
SHROOM3-202ENST00000466541 MYL3P08590 195 aa13.77□□□□□ -0.21
SHROOM3-202ENST00000466541 GNA11P29992 359 aa13.77□□□□□ -0.21
SHROOM3-202ENST00000466541 ZNF76P36508 570 aa13.77□□□□□ -0.21
SHROOM3-202ENST00000466541 ACLYP53396 1101 aa13.77□□□□□ -0.21
SHROOM3-202ENST00000466541 LRRC26Q2I0M4 334 aa13.77□□□□□ -0.21
SHROOM3-202ENST00000466541 PCNX4Q63HM2 1172 aa13.77□□□□□ -0.21
SHROOM3-202ENST00000466541 REXO1Q8N1G1 1221 aaKnown RBP13.77□□□□□ -0.21
SHROOM3-202ENST00000466541 PCSK9Q8NBP7 692 aaKnown RBP13.77□□□□□ -0.21
SHROOM3-202ENST00000466541 KLHDC9Q8NEP7 349 aa13.77□□□□□ -0.21
SHROOM3-202ENST00000466541 ZSCAN31Q96LW9 406 aaPredicted RBP13.77□□□□□ -0.21
SHROOM3-202ENST00000466541 ANO3Q9BYT9 981 aa13.77□□□□□ -0.21
SHROOM3-202ENST00000466541 ZMYND12Q9H0C1 365 aa13.77□□□□□ -0.21
SHROOM3-202ENST00000466541 UPF3AQ9H1J1 476 aaKnown RBP13.77□□□□□ -0.21
SHROOM3-202ENST00000466541 GJB4Q9NTQ9 266 aa13.77□□□□□ -0.21
SHROOM3-202ENST00000466541 PCDH10Q9P2E7 1040 aa13.77□□□□□ -0.21
SHROOM3-202ENST00000466541 DDX41Q9UJV9 622 aaKnown RBP13.77□□□□□ -0.21
SHROOM3-202ENST00000466541 FRMPD4Q14CM0 1322 aa13.76□□□□□ -0.21
SHROOM3-202ENST00000466541 CTAGE5O15320 804 aa13.76□□□□□ -0.21
SHROOM3-202ENST00000466541 ZEB2O60315 1214 aa13.76□□□□□ -0.21
SHROOM3-202ENST00000466541 FOSP01100 380 aaPredicted RBP13.76□□□□□ -0.21
SHROOM3-202ENST00000466541 COL6A1P12109 1028 aa13.76□□□□□ -0.21
SHROOM3-202ENST00000466541 SP2Q02086 613 aa13.76□□□□□ -0.21
SHROOM3-202ENST00000466541 GNPTABQ3T906 1256 aa13.76□□□□□ -0.21
SHROOM3-202ENST00000466541 BRDTQ58F21 947 aaPredicted RBP13.76□□□□□ -0.21
SHROOM3-202ENST00000466541 CCDC62Q6P9F0 684 aa13.76□□□□□ -0.21
SHROOM3-202ENST00000466541 CXCL17Q6UXB2 119 aa13.76□□□□□ -0.21
SHROOM3-202ENST00000466541 DHX37Q8IY37 1157 aaKnown RBP13.76□□□□□ -0.21
SHROOM3-202ENST00000466541 NSUN7Q8NE18 718 aaKnown RBP13.76□□□□□ -0.21
SHROOM3-202ENST00000466541 BICD2Q8TD16 824 aa13.76□□□□□ -0.21
SHROOM3-202ENST00000466541 AFG1LQ8WV93 481 aa13.76□□□□□ -0.21
SHROOM3-202ENST00000466541 UIMC1Q96RL1 719 aa13.76□□□□□ -0.21
SHROOM3-202ENST00000466541 ALG1Q9BT22 464 aa13.76□□□□□ -0.21
SHROOM3-202ENST00000466541 SH3GLB2Q9NR46 395 aa13.76□□□□□ -0.21
SHROOM3-202ENST00000466541 PHF24Q9UPV7 400 aa13.76□□□□□ -0.21
SHROOM3-202ENST00000466541 ATP11BQ9Y2G3 1177 aa13.76□□□□□ -0.21
SHROOM3-202ENST00000466541 CEP290O15078 2479 aa13.75□□□□□ -0.21
SHROOM3-202ENST00000466541 ESYT2A0FGR8 921 aa13.75□□□□□ -0.21
SHROOM3-202ENST00000466541 NKRFO15226 690 aaKnown RBP eCLIP13.75□□□□□ -0.21
SHROOM3-202ENST00000466541 GGPS1O95749 300 aa13.75□□□□□ -0.21
SHROOM3-202ENST00000466541 GH1P01241 217 aa13.75□□□□□ -0.21
SHROOM3-202ENST00000466541 XBP1P17861 261 aa13.75□□□□□ -0.21
SHROOM3-202ENST00000466541 CPT1AP50416 773 aa13.75□□□□□ -0.21
SHROOM3-202ENST00000466541 SP4Q02446 784 aa13.75□□□□□ -0.21
SHROOM3-202ENST00000466541 ST3GAL1Q11201 340 aa13.75□□□□□ -0.21
SHROOM3-202ENST00000466541 SLC39A5Q6ZMH5 540 aa13.75□□□□□ -0.21
SHROOM3-202ENST00000466541 NLRX1Q86UT6 975 aa13.75□□□□□ -0.21
SHROOM3-202ENST00000466541 CYP2W1Q8TAV3 490 aa13.75□□□□□ -0.21
SHROOM3-202ENST00000466541 PPP1R13LQ8WUF5 828 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms