RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 NEK9Q8TD19 979 aa20.69■□□□□ 0.9
CCDC88B-204ENST00000463837 ABHD10Q9NUJ1 306 aa20.69■□□□□ 0.9
CCDC88B-204ENST00000463837 CD19P15391 556 aa20.69■□□□□ 0.9
CCDC88B-204ENST00000463837 ICE2Q659A1 982 aa20.69■□□□□ 0.9
CCDC88B-204ENST00000463837 HAUS1Q96CS2 278 aa20.69■□□□□ 0.9
CCDC88B-204ENST00000463837 FAM81BQ96LP2 452 aa20.69■□□□□ 0.9
CCDC88B-204ENST00000463837 P4HA1P13674 534 aa20.69■□□□□ 0.9
CCDC88B-204ENST00000463837 TNFAIP1Q13829 316 aa20.69■□□□□ 0.9
CCDC88B-204ENST00000463837 METP08581 1390 aa20.68■□□□□ 0.9
CCDC88B-204ENST00000463837 K7ENM7 598 aa20.68■□□□□ 0.9
CCDC88B-204ENST00000463837 MFAP3P55082 362 aa20.68■□□□□ 0.9
CCDC88B-204ENST00000463837 TRIM42Q8IWZ5 723 aa20.68■□□□□ 0.9
CCDC88B-204ENST00000463837 NDST4Q9H3R1 872 aa20.68■□□□□ 0.9
CCDC88B-204ENST00000463837 DAPK3O43293 454 aa20.68■□□□□ 0.9
CCDC88B-204ENST00000463837 KRT26Q7Z3Y9 468 aa20.68■□□□□ 0.9
CCDC88B-204ENST00000463837 RUBCNQ92622 972 aa20.68■□□□□ 0.9
CCDC88B-204ENST00000463837 KLHL29Q96CT2 875 aa20.68■□□□□ 0.9
CCDC88B-204ENST00000463837 EPSTI1Q96J88 318 aa20.68■□□□□ 0.9
CCDC88B-204ENST00000463837 MTA3Q9BTC8 594 aa20.68■□□□□ 0.9
CCDC88B-204ENST00000463837 SH3GLB2Q9NR46 395 aa20.68■□□□□ 0.9
CCDC88B-204ENST00000463837 ATP8A1Q9Y2Q0 1164 aa20.68■□□□□ 0.9
CCDC88B-204ENST00000463837 JPH2Q9BR39 696 aaPredicted RBP20.68■□□□□ 0.9
CCDC88B-204ENST00000463837 NAA30Q147X3 362 aaPredicted RBP20.68■□□□□ 0.9
CCDC88B-204ENST00000463837 PPP4R3CPQ6ZMV5 832 aa20.68■□□□□ 0.9
CCDC88B-204ENST00000463837 MIS12Q9H081 205 aa20.68■□□□□ 0.9
CCDC88B-204ENST00000463837 ZSWIM5Q9P217 1185 aa20.68■□□□□ 0.9
CCDC88B-204ENST00000463837 RABGAP1Q9Y3P9 1069 aa20.68■□□□□ 0.9
CCDC88B-204ENST00000463837 MRFAP1Q9Y605 127 aa20.68■□□□□ 0.9
CCDC88B-204ENST00000463837 ADGRL3Q9HAR2 1447 aa20.67■□□□□ 0.9
CCDC88B-204ENST00000463837 SART1O43290 800 aaKnown RBP20.67■□□□□ 0.9
CCDC88B-204ENST00000463837 MYCLP12524 364 aaPredicted RBP20.67■□□□□ 0.9
CCDC88B-204ENST00000463837 RFC1P35251 1148 aaPredicted RBP20.67■□□□□ 0.9
CCDC88B-204ENST00000463837 GBP7Q8N8V2 638 aaPredicted RBP20.67■□□□□ 0.9
CCDC88B-204ENST00000463837 KIAA1024Q9UPX6 916 aa20.67■□□□□ 0.9
CCDC88B-204ENST00000463837 TRPC6Q9Y210 931 aa20.67■□□□□ 0.9
CCDC88B-204ENST00000463837 LGALS16A8MUM7 142 aa20.67■□□□□ 0.9
CCDC88B-204ENST00000463837 ANKRD65E5RJM6 399 aa20.67■□□□□ 0.9
CCDC88B-204ENST00000463837 OPHN1O60890 802 aa20.67■□□□□ 0.9
CCDC88B-204ENST00000463837 LTKP29376 864 aa20.67■□□□□ 0.9
CCDC88B-204ENST00000463837 ECEL1O95672 775 aa20.67■□□□□ 0.9
CCDC88B-204ENST00000463837 ZYXQ15942 572 aaKnown RBP20.67■□□□□ 0.9
CCDC88B-204ENST00000463837 GPATCH4Q5T3I0 446 aaKnown RBP20.67■□□□□ 0.9
CCDC88B-204ENST00000463837 TPX2Q9ULW0 747 aaKnown RBP20.67■□□□□ 0.9
CCDC88B-204ENST00000463837 GOLGA8HP0CJ92 632 aa20.67■□□□□ 0.9
CCDC88B-204ENST00000463837 RBBP5Q15291 538 aaKnown RBP20.67■□□□□ 0.9
CCDC88B-204ENST00000463837 C6orf118Q5T5N4 469 aa20.67■□□□□ 0.9
CCDC88B-204ENST00000463837 ANKRD7Q92527 254 aa20.67■□□□□ 0.9
CCDC88B-204ENST00000463837 UNC13BO14795 1591 aa20.66■□□□□ 0.9
CCDC88B-204ENST00000463837 ADCY2Q08462 1091 aa20.66■□□□□ 0.9
CCDC88B-204ENST00000463837 BFSP1Q12934 665 aa20.66■□□□□ 0.9
CCDC88B-204ENST00000463837 CFAP61Q8NHU2 1237 aa20.66■□□□□ 0.9
CCDC88B-204ENST00000463837 FBXO41Q8TF61 875 aa20.66■□□□□ 0.9
CCDC88B-204ENST00000463837 TEKT3Q9BXF9 490 aa20.66■□□□□ 0.9
CCDC88B-204ENST00000463837 DISC1Q9NRI5 854 aa20.66■□□□□ 0.9
CCDC88B-204ENST00000463837 MRPL11Q9Y3B7 192 aaKnown RBP20.66■□□□□ 0.9
CCDC88B-204ENST00000463837 NSFP46459 744 aaKnown RBP20.66■□□□□ 0.9
CCDC88B-204ENST00000463837 NBPF9Q3BBW0 867 aa20.66■□□□□ 0.9
CCDC88B-204ENST00000463837 VCX3AQ9NNX9 186 aa20.66■□□□□ 0.9
CCDC88B-204ENST00000463837 FRMPD2Q68DX3 1309 aaPredicted RBP20.66■□□□□ 0.9
CCDC88B-204ENST00000463837 PLTPP55058 493 aa20.66■□□□□ 0.9
CCDC88B-204ENST00000463837 NLRX1Q86UT6 975 aa20.66■□□□□ 0.9
CCDC88B-204ENST00000463837 TRIM4Q9C037 500 aa20.66■□□□□ 0.9
CCDC88B-204ENST00000463837 AZI2Q9H6S1 392 aa20.66■□□□□ 0.9
CCDC88B-204ENST00000463837 PNMA2Q9UL42 364 aa20.66■□□□□ 0.9
CCDC88B-204ENST00000463837 PPIP5K2O43314 1243 aa20.65■□□□□ 0.9
CCDC88B-204ENST00000463837 STAM2O75886 525 aa20.65■□□□□ 0.9
CCDC88B-204ENST00000463837 FTCDO95954 541 aa20.65■□□□□ 0.9
CCDC88B-204ENST00000463837 GUCY2CP25092 1073 aa20.65■□□□□ 0.9
CCDC88B-204ENST00000463837 FBXO11Q86XK2 927 aa20.65■□□□□ 0.9
CCDC88B-204ENST00000463837 FMO2Q99518 471 aa20.65■□□□□ 0.9
CCDC88B-204ENST00000463837 ECM2O94769 699 aaPredicted RBP20.65■□□□□ 0.9
CCDC88B-204ENST00000463837 HSP90AA5PQ58FG0 334 aa20.65■□□□□ 0.9
CCDC88B-204ENST00000463837 CALR3Q96L12 384 aaKnown RBP20.65■□□□□ 0.9
CCDC88B-204ENST00000463837 NOVA2Q9UNW9 492 aaKnown RBP20.65■□□□□ 0.9
CCDC88B-204ENST00000463837 POLR2MP0CAP2 368 aa20.65■□□□□ 0.9
CCDC88B-204ENST00000463837 POLR2BP30876 1174 aaKnown RBP20.65■□□□□ 0.9
CCDC88B-204ENST00000463837 ARMCX5Q6P1M9 558 aa20.65■□□□□ 0.9
CCDC88B-204ENST00000463837 PPM1KQ8N3J5 372 aa20.65■□□□□ 0.9
CCDC88B-204ENST00000463837 USP27XA6NNY8 438 aa20.65■□□□□ 0.9
CCDC88B-204ENST00000463837 CHUKO15111 745 aa20.65■□□□□ 0.9
CCDC88B-204ENST00000463837 ZNF148Q9UQR1 794 aa20.65■□□□□ 0.9
CCDC88B-204ENST00000463837 ADGRG1Q9Y653 693 aa20.65■□□□□ 0.9
CCDC88B-204ENST00000463837 MYO1FO00160 1098 aa20.64■□□□□ 0.9
CCDC88B-204ENST00000463837 USP40Q9NVE5 1235 aa20.64■□□□□ 0.9
CCDC88B-204ENST00000463837 TACC3Q9Y6A5 838 aa20.64■□□□□ 0.9
CCDC88B-204ENST00000463837 TARSL2A2RTX5 802 aaKnown RBP20.64■□□□□ 0.89
CCDC88B-204ENST00000463837 MESDQ14696 234 aa20.64■□□□□ 0.89
CCDC88B-204ENST00000463837 MFSD14BQ5SR56 506 aa20.64■□□□□ 0.89
CCDC88B-204ENST00000463837 RASIP1Q5U651 963 aa20.64■□□□□ 0.89
CCDC88B-204ENST00000463837 PTPN22Q9Y2R2 807 aa20.64■□□□□ 0.89
CCDC88B-204ENST00000463837 NLRP1Q9C000 1473 aa20.64■□□□□ 0.89
CCDC88B-204ENST00000463837 ATP2B4P23634 1241 aa20.64■□□□□ 0.89
CCDC88B-204ENST00000463837 FAM186BQ8IYM0 893 aa20.64■□□□□ 0.89
CCDC88B-204ENST00000463837 THEGQ9P2T0 379 aa20.64■□□□□ 0.89
CCDC88B-204ENST00000463837 CCDC24Q8N4L8 307 aa20.64■□□□□ 0.89
CCDC88B-204ENST00000463837 FAM133AQ8N9E0 248 aa20.64■□□□□ 0.89
CCDC88B-204ENST00000463837 RASGRF2O14827 1237 aa20.63■□□□□ 0.89
CCDC88B-204ENST00000463837 GIPC1O14908 333 aa20.63■□□□□ 0.89
CCDC88B-204ENST00000463837 SLC7A5Q01650 507 aa20.63■□□□□ 0.89
CCDC88B-204ENST00000463837 PTK2Q05397 1052 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms