RNA–Protein interactions for RNA: ENST00000463622.6

SCFD1-204, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 1,943 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-204ENST00000463622 NKD1Q969G9 470 aa4.93□□□□□ -1.62
SCFD1-204ENST00000463622 POLR3GLQ9BT43 218 aa4.93□□□□□ -1.62
SCFD1-204ENST00000463622 SPON2Q9BUD6 331 aa4.93□□□□□ -1.62
SCFD1-204ENST00000463622 PCDHGB7Q9Y5F8 929 aa4.93□□□□□ -1.62
SCFD1-204ENST00000463622 CGNL1Q0VF96 1302 aa4.93□□□□□ -1.62
SCFD1-204ENST00000463622 PIK3C2AO00443 1686 aa4.93□□□□□ -1.62
SCFD1-204ENST00000463622 QSER1Q2KHR3 1735 aa4.92□□□□□ -1.62
SCFD1-204ENST00000463622 PCNTO95613 3336 aa4.92□□□□□ -1.62
SCFD1-204ENST00000463622 CD163L1Q9NR16 1453 aa4.92□□□□□ -1.62
SCFD1-204ENST00000463622 BTAF1O14981 1849 aa4.92□□□□□ -1.62
SCFD1-204ENST00000463622 DBX1A6NMT0 343 aa4.92□□□□□ -1.62
SCFD1-204ENST00000463622 KCNA3P22001 575 aa4.92□□□□□ -1.62
SCFD1-204ENST00000463622 RPL10P27635 214 aaKnown RBP4.92□□□□□ -1.62
SCFD1-204ENST00000463622 MFAP1P55081 439 aaKnown RBP4.92□□□□□ -1.62
SCFD1-204ENST00000463622 TEKQ02763 1124 aa4.92□□□□□ -1.62
SCFD1-204ENST00000463622 ZNF394Q53GI3 561 aa4.92□□□□□ -1.62
SCFD1-204ENST00000463622 NBPF12Q5TAG4 269 aaPredicted RBP4.92□□□□□ -1.62
SCFD1-204ENST00000463622 NBPF6Q5VWK0 638 aa4.92□□□□□ -1.62
SCFD1-204ENST00000463622 ZPBP2Q6X784 338 aa4.92□□□□□ -1.62
SCFD1-204ENST00000463622 SMIM5Q71RC9 77 aa4.92□□□□□ -1.62
SCFD1-204ENST00000463622 SMARCC1Q92922 1105 aaPredicted RBP4.92□□□□□ -1.62
SCFD1-204ENST00000463622 NBPF4Q96M43 638 aa4.92□□□□□ -1.62
SCFD1-204ENST00000463622 EHMT1Q9H9B1 1298 aa4.92□□□□□ -1.62
SCFD1-204ENST00000463622 AKAP12Q02952 1782 aa4.91□□□□□ -1.62
SCFD1-204ENST00000463622 A0A0G2JLW4 131 aa4.91□□□□□ -1.62
SCFD1-204ENST00000463622 MEIS1O00470 390 aa4.91□□□□□ -1.62
SCFD1-204ENST00000463622 HOXC9P31274 260 aa4.91□□□□□ -1.62
SCFD1-204ENST00000463622 DDX10Q13206 875 aaKnown RBP4.91□□□□□ -1.62
SCFD1-204ENST00000463622 C9orf131Q5VYM1 1079 aa4.91□□□□□ -1.62
SCFD1-204ENST00000463622 NLRC3Q7RTR2 1065 aa4.91□□□□□ -1.62
SCFD1-204ENST00000463622 USHBP1Q8N6Y0 703 aa4.91□□□□□ -1.62
SCFD1-204ENST00000463622 LTV1Q96GA3 475 aaPredicted RBP4.91□□□□□ -1.62
SCFD1-204ENST00000463622 PUS7Q96PZ0 661 aaKnown RBP4.91□□□□□ -1.62
SCFD1-204ENST00000463622 FOXP3Q9BZS1 431 aa4.91□□□□□ -1.62
SCFD1-204ENST00000463622 ASCC2Q9H1I8 757 aaPredicted RBP4.91□□□□□ -1.62
SCFD1-204ENST00000463622 SLC12A5Q9H2X9 1139 aa4.91□□□□□ -1.62
SCFD1-204ENST00000463622 CNNM2Q9H8M5 875 aa4.91□□□□□ -1.62
SCFD1-204ENST00000463622 DCP1AQ9NPI6 582 aaPredicted RBP4.91□□□□□ -1.62
SCFD1-204ENST00000463622 FKTNO75072 461 aa4.91□□□□□ -1.62
SCFD1-204ENST00000463622 MMP10P09238 476 aa4.91□□□□□ -1.62
SCFD1-204ENST00000463622 C1QTNF9P0C862 333 aa4.91□□□□□ -1.62
SCFD1-204ENST00000463622 HSPA1AP0DMV8 641 aaKnown RBP4.91□□□□□ -1.62
SCFD1-204ENST00000463622 HSPA1BP0DMV9 641 aaKnown RBP4.91□□□□□ -1.62
SCFD1-204ENST00000463622 DPEP1P16444 411 aa4.91□□□□□ -1.62
SCFD1-204ENST00000463622 ZNF76P36508 570 aa4.91□□□□□ -1.62
SCFD1-204ENST00000463622 NBPF9Q3BBW0 867 aa4.91□□□□□ -1.62
SCFD1-204ENST00000463622 CDCP2Q5VXM1 449 aa4.91□□□□□ -1.62
SCFD1-204ENST00000463622 KIAA0825Q8IV33 1275 aa4.91□□□□□ -1.62
SCFD1-204ENST00000463622 SIRT2Q8IXJ6 389 aa4.91□□□□□ -1.62
SCFD1-204ENST00000463622 TMEM192Q8IY95 271 aa4.91□□□□□ -1.62
SCFD1-204ENST00000463622 NLGN1Q8N2Q7 840 aa4.91□□□□□ -1.62
SCFD1-204ENST00000463622 PDZD8Q8NEN9 1154 aa4.91□□□□□ -1.62
SCFD1-204ENST00000463622 PIGBQ92521 554 aa4.91□□□□□ -1.62
SCFD1-204ENST00000463622 TCTN2Q96GX1 697 aa4.91□□□□□ -1.62
SCFD1-204ENST00000463622 NT5C1AQ9BXI3 368 aa4.91□□□□□ -1.62
SCFD1-204ENST00000463622 HDAC8Q9BY41 377 aa4.91□□□□□ -1.62
SCFD1-204ENST00000463622 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP4.91□□□□□ -1.62
SCFD1-204ENST00000463622 MAP3K19Q56UN5 1328 aa4.91□□□□□ -1.62
SCFD1-204ENST00000463622 PALLDQ8WX93 1383 aa4.91□□□□□ -1.62
SCFD1-204ENST00000463622 WNK3Q9BYP7 1800 aa4.9□□□□□ -1.62
SCFD1-204ENST00000463622 KRTAP4-8A0A0G2JLE6 195 aa4.9□□□□□ -1.62
SCFD1-204ENST00000463622 CYP27B1O15528 508 aa4.9□□□□□ -1.62
SCFD1-204ENST00000463622 PSPNO60542 156 aa4.9□□□□□ -1.62
SCFD1-204ENST00000463622 KRT1P04264 644 aa4.9□□□□□ -1.62
SCFD1-204ENST00000463622 NME1P15531 152 aaKnown RBP4.9□□□□□ -1.62
SCFD1-204ENST00000463622 RAP1GAPP47736 663 aa4.9□□□□□ -1.62
SCFD1-204ENST00000463622 ZNF165P49910 485 aa4.9□□□□□ -1.62
SCFD1-204ENST00000463622 TMF1P82094 1093 aa4.9□□□□□ -1.62
SCFD1-204ENST00000463622 USP48Q86UV5 1035 aa4.9□□□□□ -1.62
SCFD1-204ENST00000463622 C16orf71Q8IYS4 520 aaPredicted RBP4.9□□□□□ -1.62
SCFD1-204ENST00000463622 LINC00116Q8NCU8 138 aa4.9□□□□□ -1.62
SCFD1-204ENST00000463622 SMC1BQ8NDV3 1235 aa4.9□□□□□ -1.62
SCFD1-204ENST00000463622 SLC9A7Q96T83 725 aa4.9□□□□□ -1.62
SCFD1-204ENST00000463622 PRDM14Q9GZV8 571 aa4.9□□□□□ -1.62
SCFD1-204ENST00000463622 KDM2BQ8NHM5 1336 aa4.9□□□□□ -1.62
SCFD1-204ENST00000463622 C10orf71Q711Q0 1435 aa4.9□□□□□ -1.62
SCFD1-204ENST00000463622 NSD3Q9BZ95 1437 aa4.9□□□□□ -1.62
SCFD1-204ENST00000463622 CICQ96RK0 1608 aaPredicted RBP4.9□□□□□ -1.63
SCFD1-204ENST00000463622 PXDNLA1KZ92 1463 aa4.9□□□□□ -1.63
SCFD1-204ENST00000463622 CLEC3AO75596 197 aa4.89□□□□□ -1.63
SCFD1-204ENST00000463622 PRAMEF1O95521 474 aa4.89□□□□□ -1.63
SCFD1-204ENST00000463622 EFEMP2O95967 443 aa4.89□□□□□ -1.63
SCFD1-204ENST00000463622 FBLN1P23142 703 aa4.89□□□□□ -1.63
SCFD1-204ENST00000463622 FANCCQ00597 558 aa4.89□□□□□ -1.63
SCFD1-204ENST00000463622 ITPK1Q13572 414 aa4.89□□□□□ -1.63
SCFD1-204ENST00000463622 HDGFL2Q7Z4V5 671 aaPredicted RBP4.89□□□□□ -1.63
SCFD1-204ENST00000463622 SLITRK4Q8IW52 837 aa4.89□□□□□ -1.63
SCFD1-204ENST00000463622 REXO1Q8N1G1 1221 aaKnown RBP4.89□□□□□ -1.63
SCFD1-204ENST00000463622 FBXO15Q8NCQ5 510 aaPredicted RBP4.89□□□□□ -1.63
SCFD1-204ENST00000463622 DHX38Q92620 1227 aaKnown RBP4.89□□□□□ -1.63
SCFD1-204ENST00000463622 SLC6A18Q96N87 628 aa4.89□□□□□ -1.63
SCFD1-204ENST00000463622 EPB41L4BQ9H329 900 aa4.89□□□□□ -1.63
SCFD1-204ENST00000463622 TERF2IPQ9NYB0 399 aa4.89□□□□□ -1.63
SCFD1-204ENST00000463622 GPR160Q9UJ42 338 aa4.89□□□□□ -1.63
SCFD1-204ENST00000463622 MEGF6O75095 1541 aa4.89□□□□□ -1.63
SCFD1-204ENST00000463622 EDC4Q6P2E9 1401 aaKnown RBP4.89□□□□□ -1.63
SCFD1-204ENST00000463622 A0A1W2PP64 1363 aa4.89□□□□□ -1.63
SCFD1-204ENST00000463622 USP2O75604 605 aaPredicted RBP4.89□□□□□ -1.63
SCFD1-204ENST00000463622 AMPHP49418 695 aa4.89□□□□□ -1.63
SCFD1-204ENST00000463622 RACK1P63244 317 aaKnown RBP4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms