RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 FAM217BQ9NTX9 383 aaPredicted RBP21.5■■□□□ 1.03
USP39-209ENST00000458268 PDRG1Q9NUG6 133 aa21.5■■□□□ 1.03
USP39-209ENST00000458268 RTEL1Q9NZ71 1219 aa21.5■■□□□ 1.03
USP39-209ENST00000458268 DCDC2CA8MYV0 355 aa21.49■■□□□ 1.03
USP39-209ENST00000458268 NKRFO15226 690 aaKnown RBP eCLIP21.49■■□□□ 1.03
USP39-209ENST00000458268 GH1P01241 217 aa21.49■■□□□ 1.03
USP39-209ENST00000458268 CLTBP09497 229 aa21.49■■□□□ 1.03
USP39-209ENST00000458268 SNX17Q15036 470 aa21.49■■□□□ 1.03
USP39-209ENST00000458268 PHKBQ93100 1093 aa21.49■■□□□ 1.03
USP39-209ENST00000458268 PDLIM7Q9NR12 457 aa21.49■■□□□ 1.03
USP39-209ENST00000458268 Q9Y3F1 56 aa21.49■■□□□ 1.03
USP39-209ENST00000458268 DOCK5Q9H7D0 1870 aa21.49■■□□□ 1.03
USP39-209ENST00000458268 AKAP17AQ02040 695 aaKnown RBP21.48■■□□□ 1.03
USP39-209ENST00000458268 TOB2Q14106 344 aaPredicted RBP21.48■■□□□ 1.03
USP39-209ENST00000458268 FAM47CQ5HY64 1035 aa21.48■■□□□ 1.03
USP39-209ENST00000458268 UBE2OQ9C0C9 1292 aaKnown RBP21.48■■□□□ 1.03
USP39-209ENST00000458268 TMEM39AQ9NV64 488 aa21.48■■□□□ 1.03
USP39-209ENST00000458268 POLR3EQ9NVU0 708 aa21.48■■□□□ 1.03
USP39-209ENST00000458268 ELP1O95163 1332 aa21.48■■□□□ 1.03
USP39-209ENST00000458268 SPDYE3A6NKU9 549 aa21.47■■□□□ 1.03
USP39-209ENST00000458268 MEIS2O14770 477 aa21.47■■□□□ 1.03
USP39-209ENST00000458268 SEC24BO95487 1268 aa21.47■■□□□ 1.03
USP39-209ENST00000458268 RCAN1P53805 252 aa21.47■■□□□ 1.03
USP39-209ENST00000458268 FUT2Q10981 343 aa21.47■■□□□ 1.03
USP39-209ENST00000458268 AFG1LQ8WV93 481 aa21.47■■□□□ 1.03
USP39-209ENST00000458268 PGBD1Q96JS3 809 aa21.47■■□□□ 1.03
USP39-209ENST00000458268 SLC26A6Q9BXS9 759 aa21.47■■□□□ 1.03
USP39-209ENST00000458268 TM6SF1Q9BZW5 370 aa21.47■■□□□ 1.03
USP39-209ENST00000458268 LTBP2Q14767 1821 aa21.47■■□□□ 1.03
USP39-209ENST00000458268 TRIOBPQ9H2D6 2365 aa21.46■■□□□ 1.03
USP39-209ENST00000458268 ARVCFO00192 962 aa21.46■■□□□ 1.03
USP39-209ENST00000458268 TLR3O15455 904 aaKnown RBP21.46■■□□□ 1.03
USP39-209ENST00000458268 CABYRO75952 493 aa21.46■■□□□ 1.03
USP39-209ENST00000458268 PDIA3P30101 505 aaKnown RBP21.46■■□□□ 1.03
USP39-209ENST00000458268 ADCY7P51828 1080 aa21.46■■□□□ 1.03
USP39-209ENST00000458268 ITGA7Q13683 1181 aa21.46■■□□□ 1.03
USP39-209ENST00000458268 CCDC62Q6P9F0 684 aa21.46■■□□□ 1.03
USP39-209ENST00000458268 VSIG10LQ86VR7 867 aa21.46■■□□□ 1.03
USP39-209ENST00000458268 DHX37Q8IY37 1157 aaKnown RBP21.46■■□□□ 1.03
USP39-209ENST00000458268 DDX41Q9UJV9 622 aaKnown RBP21.46■■□□□ 1.03
USP39-209ENST00000458268 TRIM43BA6NCK2 446 aa21.45■■□□□ 1.02
USP39-209ENST00000458268 STXBP3O00186 592 aa21.45■■□□□ 1.02
USP39-209ENST00000458268 CPLX1O14810 134 aa21.45■■□□□ 1.02
USP39-209ENST00000458268 GGPS1O95749 300 aa21.45■■□□□ 1.02
USP39-209ENST00000458268 RAG1P15918 1043 aa21.45■■□□□ 1.02
USP39-209ENST00000458268 ARHGAP1Q07960 439 aa21.45■■□□□ 1.02
USP39-209ENST00000458268 C1orf53Q5VUE5 145 aa21.45■■□□□ 1.02
USP39-209ENST00000458268 TYW1BQ6NUM6 668 aa21.45■■□□□ 1.02
USP39-209ENST00000458268 BADQ92934 168 aa21.45■■□□□ 1.02
USP39-209ENST00000458268 TRIM43Q96BQ3 446 aaPredicted RBP21.45■■□□□ 1.02
USP39-209ENST00000458268 MTG1Q9BT17 334 aaPredicted RBP21.45■■□□□ 1.02
USP39-209ENST00000458268 AGXT2Q9BYV1 514 aa21.45■■□□□ 1.02
USP39-209ENST00000458268 PKD2L1Q9P0L9 805 aa21.45■■□□□ 1.02
USP39-209ENST00000458268 DNAH12Q6ZR08 3092 aa21.45■■□□□ 1.02
USP39-209ENST00000458268 MROH7Q68CQ1 1323 aa21.45■■□□□ 1.02
USP39-209ENST00000458268 SMCO2A6NFE2 343 aa21.44■■□□□ 1.02
USP39-209ENST00000458268 RGS20O76081 388 aa21.44■■□□□ 1.02
USP39-209ENST00000458268 MMP3P08254 477 aa21.44■■□□□ 1.02
USP39-209ENST00000458268 SCG2P13521 617 aa21.44■■□□□ 1.02
USP39-209ENST00000458268 NKX3-2P78367 333 aa21.44■■□□□ 1.02
USP39-209ENST00000458268 PURAQ00577 322 aaKnown RBP21.44■■□□□ 1.02
USP39-209ENST00000458268 SP4Q02446 784 aa21.44■■□□□ 1.02
USP39-209ENST00000458268 GNPTABQ3T906 1256 aa21.44■■□□□ 1.02
USP39-209ENST00000458268 GDF15Q99988 308 aa21.44■■□□□ 1.02
USP39-209ENST00000458268 PPP1R12CQ9BZL4 782 aa21.44■■□□□ 1.02
USP39-209ENST00000458268 PCDHA6Q9UN73 950 aa21.44■■□□□ 1.02
USP39-209ENST00000458268 PCDHA8Q9Y5H6 950 aa21.44■■□□□ 1.02
USP39-209ENST00000458268 PIK3CDO00329 1044 aa21.43■■□□□ 1.02
USP39-209ENST00000458268 EIF5BO60841 1220 aaKnown RBP21.43■■□□□ 1.02
USP39-209ENST00000458268 UBA1P22314 1058 aaKnown RBP21.43■■□□□ 1.02
USP39-209ENST00000458268 MRPS9P82933 396 aaKnown RBP21.43■■□□□ 1.02
USP39-209ENST00000458268 FAAP100Q0VG06 881 aa21.43■■□□□ 1.02
USP39-209ENST00000458268 PPP1R18Q6NYC8 613 aa21.43■■□□□ 1.02
USP39-209ENST00000458268 EHMT1Q9H9B1 1298 aa21.43■■□□□ 1.02
USP39-209ENST00000458268 MLXIPQ9HAP2 919 aa21.43■■□□□ 1.02
USP39-209ENST00000458268 TMEM260Q9NX78 707 aa21.43■■□□□ 1.02
USP39-209ENST00000458268 BARHL2Q9NY43 387 aa21.43■■□□□ 1.02
USP39-209ENST00000458268 hCG_1984214I3L0E3 225 aa21.42■■□□□ 1.02
USP39-209ENST00000458268 DTNBO60941 627 aa21.42■■□□□ 1.02
USP39-209ENST00000458268 ZNF286BP0CG31 522 aa21.42■■□□□ 1.02
USP39-209ENST00000458268 PFKFB3Q16875 520 aaPredicted RBP21.42■■□□□ 1.02
USP39-209ENST00000458268 JAKMIP3Q5VZ66 844 aa21.42■■□□□ 1.02
USP39-209ENST00000458268 KCNV1Q6PIU1 500 aa21.42■■□□□ 1.02
USP39-209ENST00000458268 ANKRD33Q7Z3H0 272 aa21.42■■□□□ 1.02
USP39-209ENST00000458268 FBXL16Q8N461 479 aa21.42■■□□□ 1.02
USP39-209ENST00000458268 ZNF713Q8N859 430 aaPredicted RBP21.42■■□□□ 1.02
USP39-209ENST00000458268 SPATA33Q96N06 139 aa21.42■■□□□ 1.02
USP39-209ENST00000458268 TRPV6Q9H1D0 765 aa21.42■■□□□ 1.02
USP39-209ENST00000458268 RIC8AQ9NPQ8 531 aa21.42■■□□□ 1.02
USP39-209ENST00000458268 NID2Q14112 1375 aa21.41■■□□□ 1.02
USP39-209ENST00000458268 GRIN2DO15399 1336 aa21.41■■□□□ 1.02
USP39-209ENST00000458268 FRMPD4Q14CM0 1322 aa21.41■■□□□ 1.02
USP39-209ENST00000458268 A6NJR5 290 aa21.41■■□□□ 1.02
USP39-209ENST00000458268 PRPF3O43395 683 aaKnown RBP21.41■■□□□ 1.02
USP39-209ENST00000458268 CDK7P50613 346 aa21.41■■□□□ 1.02
USP39-209ENST00000458268 ANAPC15P60006 121 aa21.41■■□□□ 1.02
USP39-209ENST00000458268 SP2Q02086 613 aa21.41■■□□□ 1.02
USP39-209ENST00000458268 SSRP1Q08945 709 aaKnown RBP21.41■■□□□ 1.02
USP39-209ENST00000458268 LAMC2Q13753 1193 aa21.41■■□□□ 1.02
USP39-209ENST00000458268 NBPF20Q3BBV1 942 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 114.4 ms