RNA–Protein interactions for RNA: ENST00000458034.1

RFX3-211, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 814 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-211ENST00000458034 GTF2IP78347 998 aa12.17□□□□□ -0.46
RFX3-211ENST00000458034 AMPD2Q01433 879 aa12.17□□□□□ -0.46
RFX3-211ENST00000458034 STK4Q13043 487 aa12.17□□□□□ -0.46
RFX3-211ENST00000458034 PICALMQ13492 652 aa12.17□□□□□ -0.46
RFX3-211ENST00000458034 CCDC96Q2M329 555 aa12.17□□□□□ -0.46
RFX3-211ENST00000458034 VWA3BQ502W6 1294 aa12.17□□□□□ -0.46
RFX3-211ENST00000458034 MEX3CQ5U5Q3 659 aaKnown RBP12.17□□□□□ -0.46
RFX3-211ENST00000458034 CCDC70Q6NSX1 233 aa12.17□□□□□ -0.46
RFX3-211ENST00000458034 TRAPPC11Q7Z392 1133 aa12.17□□□□□ -0.46
RFX3-211ENST00000458034 CCDC84Q86UT8 332 aaPredicted RBP12.17□□□□□ -0.46
RFX3-211ENST00000458034 LRRC47Q8N1G4 583 aaKnown RBP12.17□□□□□ -0.46
RFX3-211ENST00000458034 GJD4Q96KN9 370 aaPredicted RBP12.17□□□□□ -0.46
RFX3-211ENST00000458034 PNMA5Q96PV4 448 aa12.17□□□□□ -0.46
RFX3-211ENST00000458034 NT5C3AQ9H0P0 336 aa12.17□□□□□ -0.46
RFX3-211ENST00000458034 CPVLQ9H3G5 476 aa12.17□□□□□ -0.46
RFX3-211ENST00000458034 ZSWIM4Q9H7M6 989 aa12.17□□□□□ -0.46
RFX3-211ENST00000458034 ANKZF1Q9H8Y5 726 aa12.17□□□□□ -0.46
RFX3-211ENST00000458034 GPCPD1Q9NPB8 672 aa12.17□□□□□ -0.46
RFX3-211ENST00000458034 TMEM260Q9NX78 707 aa12.17□□□□□ -0.46
RFX3-211ENST00000458034 POLLQ9UGP5 575 aa12.17□□□□□ -0.46
RFX3-211ENST00000458034 SERPINB13Q9UIV8 391 aa12.17□□□□□ -0.46
RFX3-211ENST00000458034 REXO2Q9Y3B8 237 aaKnown RBP12.17□□□□□ -0.46
RFX3-211ENST00000458034 SAR1BQ9Y6B6 198 aa12.17□□□□□ -0.46
RFX3-211ENST00000458034 STK24Q9Y6E0 443 aa12.17□□□□□ -0.46
RFX3-211ENST00000458034 ANKRD31Q8N7Z5 1873 aa12.17□□□□□ -0.46
RFX3-211ENST00000458034 ATAD5Q96QE3 1844 aa12.16□□□□□ -0.46
RFX3-211ENST00000458034 A0A0U1RQJ8 604 aa12.16□□□□□ -0.46
RFX3-211ENST00000458034 KLRG2A4D1S0 409 aaPredicted RBP12.16□□□□□ -0.46
RFX3-211ENST00000458034 MYMKA6NI61 221 aa12.16□□□□□ -0.46
RFX3-211ENST00000458034 MAP2K7O14733 419 aa12.16□□□□□ -0.46
RFX3-211ENST00000458034 FCER1AP12319 257 aa12.16□□□□□ -0.46
RFX3-211ENST00000458034 AKR1B1P15121 316 aa12.16□□□□□ -0.46
RFX3-211ENST00000458034 TNNI2P48788 182 aa12.16□□□□□ -0.46
RFX3-211ENST00000458034 VAV2P52735 878 aa12.16□□□□□ -0.46
RFX3-211ENST00000458034 KIF5AQ12840 1032 aa12.16□□□□□ -0.46
RFX3-211ENST00000458034 MCM6Q14566 821 aa12.16□□□□□ -0.46
RFX3-211ENST00000458034 PAPD7Q5XG87 772 aaKnown RBP12.16□□□□□ -0.46
RFX3-211ENST00000458034 WDR59Q6PJI9 974 aa12.16□□□□□ -0.46
RFX3-211ENST00000458034 KIAA0895Q8NCT3 520 aa12.16□□□□□ -0.46
RFX3-211ENST00000458034 LRRC15Q8TF66 581 aa12.16□□□□□ -0.46
RFX3-211ENST00000458034 ATRIPQ8WXE1 791 aa12.16□□□□□ -0.46
RFX3-211ENST00000458034 COA7Q96BR5 231 aa12.16□□□□□ -0.46
RFX3-211ENST00000458034 CCDC42Q96M95 316 aa12.16□□□□□ -0.46
RFX3-211ENST00000458034 FUT8Q9BYC5 575 aa12.16□□□□□ -0.46
RFX3-211ENST00000458034 NUCKS1Q9H1E3 243 aaKnown RBP12.16□□□□□ -0.46
RFX3-211ENST00000458034 EPC1Q9H2F5 836 aa12.16□□□□□ -0.46
RFX3-211ENST00000458034 NHEJ1Q9H9Q4 299 aaPredicted RBP12.16□□□□□ -0.46
RFX3-211ENST00000458034 BLOC1S4Q9NUP1 217 aa12.16□□□□□ -0.46
RFX3-211ENST00000458034 USP40Q9NVE5 1235 aa12.16□□□□□ -0.46
RFX3-211ENST00000458034 DDX25Q9UHL0 483 aaKnown RBP12.16□□□□□ -0.46
RFX3-211ENST00000458034 ATP6V0A2Q9Y487 856 aa12.16□□□□□ -0.46
RFX3-211ENST00000458034 NRXN2Q9P2S2 1712 aa12.15□□□□□ -0.46
RFX3-211ENST00000458034 G3V3G9 751 aa12.15□□□□□ -0.46
RFX3-211ENST00000458034 TACC1O75410 805 aa12.15□□□□□ -0.46
RFX3-211ENST00000458034 SASH3O75995 380 aa12.15□□□□□ -0.46
RFX3-211ENST00000458034 GNA14O95837 355 aa12.15□□□□□ -0.46
RFX3-211ENST00000458034 HNRNPH3P31942 346 aaKnown RBP12.15□□□□□ -0.46
RFX3-211ENST00000458034 CLK2P49760 499 aaKnown RBP12.15□□□□□ -0.46
RFX3-211ENST00000458034 MIIPQ5JXC2 388 aa12.15□□□□□ -0.46
RFX3-211ENST00000458034 DCAF8Q5TAQ9 597 aa12.15□□□□□ -0.46
RFX3-211ENST00000458034 WDR93Q6P2C0 686 aa12.15□□□□□ -0.46
RFX3-211ENST00000458034 HHIPL2Q6UWX4 724 aa12.15□□□□□ -0.46
RFX3-211ENST00000458034 CCDC65Q8IXS2 484 aa12.15□□□□□ -0.46
RFX3-211ENST00000458034 ADGRF4Q8IZF3 695 aa12.15□□□□□ -0.46
RFX3-211ENST00000458034 MYOCDQ8IZQ8 938 aa12.15□□□□□ -0.46
RFX3-211ENST00000458034 CAGE1Q8TC20 777 aa12.15□□□□□ -0.46
RFX3-211ENST00000458034 DCAF4Q8WV16 495 aa12.15□□□□□ -0.46
RFX3-211ENST00000458034 RUBCNQ92622 972 aa12.15□□□□□ -0.46
RFX3-211ENST00000458034 SECISBP2LQ93073 1101 aaKnown RBP12.15□□□□□ -0.46
RFX3-211ENST00000458034 ZC3H12CQ9C0D7 883 aaKnown RBP12.15□□□□□ -0.46
RFX3-211ENST00000458034 EHD4Q9H223 541 aa12.15□□□□□ -0.46
RFX3-211ENST00000458034 NDST4Q9H3R1 872 aa12.15□□□□□ -0.46
RFX3-211ENST00000458034 SEMA6BQ9H3T3 888 aa12.15□□□□□ -0.46
RFX3-211ENST00000458034 SLC39A2Q9NP94 309 aa12.15□□□□□ -0.46
RFX3-211ENST00000458034 LUC7LQ9NQ29 371 aaKnown RBP12.15□□□□□ -0.46
RFX3-211ENST00000458034 CALCOCO1Q9P1Z2 691 aa12.15□□□□□ -0.46
RFX3-211ENST00000458034 KIF13BQ9NQT8 1826 aa12.15□□□□□ -0.46
RFX3-211ENST00000458034 TARSL2A2RTX5 802 aaKnown RBP12.14□□□□□ -0.47
RFX3-211ENST00000458034 POLRMTO00411 1230 aaKnown RBP12.14□□□□□ -0.47
RFX3-211ENST00000458034 ZBTB5O15062 677 aa12.14□□□□□ -0.47
RFX3-211ENST00000458034 POLR3GO15318 223 aaPredicted RBP12.14□□□□□ -0.47
RFX3-211ENST00000458034 SLC37A4O43826 429 aa12.14□□□□□ -0.47
RFX3-211ENST00000458034 TDP2O95551 362 aa12.14□□□□□ -0.47
RFX3-211ENST00000458034 RHOXF2BP0C7M4 288 aa12.14□□□□□ -0.47
RFX3-211ENST00000458034 IDEP14735 1019 aa12.14□□□□□ -0.47
RFX3-211ENST00000458034 CYP2C19P33261 490 aa12.14□□□□□ -0.47
RFX3-211ENST00000458034 BEND6Q5SZJ8 279 aaPredicted RBP12.14□□□□□ -0.47
RFX3-211ENST00000458034 HYIQ5T013 277 aa12.14□□□□□ -0.47
RFX3-211ENST00000458034 FAM182BQ5T319 152 aa12.14□□□□□ -0.47
RFX3-211ENST00000458034 MOXD1Q6UVY6 613 aa12.14□□□□□ -0.47
RFX3-211ENST00000458034 TRIM58Q8NG06 486 aa12.14□□□□□ -0.47
RFX3-211ENST00000458034 NEK11Q8NG66 645 aa12.14□□□□□ -0.47
RFX3-211ENST00000458034 TEKT1Q969V4 418 aa12.14□□□□□ -0.47
RFX3-211ENST00000458034 CEP63Q96MT8 703 aa12.14□□□□□ -0.47
RFX3-211ENST00000458034 ALS2CR12Q96Q35 445 aa12.14□□□□□ -0.47
RFX3-211ENST00000458034 RHOXF2Q9BQY4 288 aa12.14□□□□□ -0.47
RFX3-211ENST00000458034 DEF6Q9H4E7 631 aa12.14□□□□□ -0.47
RFX3-211ENST00000458034 JMJD4Q9H9V9 463 aa12.14□□□□□ -0.47
RFX3-211ENST00000458034 ST7Q9NRC1 585 aa12.14□□□□□ -0.47
RFX3-211ENST00000458034 LRRC4BQ9NT99 713 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms