RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 CTAGE5O15320 804 aa6.39□□□□□ -1.39
VPS41-209ENST00000457055 NUAK1O60285 661 aa6.39□□□□□ -1.39
VPS41-209ENST00000457055 RNASEH2AO75792 299 aaKnown RBP6.39□□□□□ -1.39
VPS41-209ENST00000457055 KRT18P05783 430 aaKnown RBP6.39□□□□□ -1.39
VPS41-209ENST00000457055 LMNB2Q03252 620 aa6.39□□□□□ -1.39
VPS41-209ENST00000457055 CAMK2GQ13555 558 aaPredicted RBP6.39□□□□□ -1.39
VPS41-209ENST00000457055 GNL2Q13823 731 aaKnown RBP6.39□□□□□ -1.39
VPS41-209ENST00000457055 PPP2R5AQ15172 486 aa6.39□□□□□ -1.39
VPS41-209ENST00000457055 TIGD5Q53EQ6 642 aa6.39□□□□□ -1.39
VPS41-209ENST00000457055 CCDC93Q567U6 631 aa6.39□□□□□ -1.39
VPS41-209ENST00000457055 SYCP2LQ5T4T6 812 aa6.39□□□□□ -1.39
VPS41-209ENST00000457055 AMIGO3Q86WK7 504 aa6.39□□□□□ -1.39
VPS41-209ENST00000457055 IRF2BP1Q8IU81 584 aa6.39□□□□□ -1.39
VPS41-209ENST00000457055 WDR75Q8IWA0 830 aaKnown RBP6.39□□□□□ -1.39
VPS41-209ENST00000457055 SLFN12Q8IYM2 578 aa6.39□□□□□ -1.39
VPS41-209ENST00000457055 ATRIPQ8WXE1 791 aa6.39□□□□□ -1.39
VPS41-209ENST00000457055 GATAD2BQ8WXI9 593 aa6.39□□□□□ -1.39
VPS41-209ENST00000457055 ERP27Q96DN0 273 aa6.39□□□□□ -1.39
VPS41-209ENST00000457055 CCDC34Q96HJ3 373 aa6.39□□□□□ -1.39
VPS41-209ENST00000457055 CDHR1Q96JP9 859 aa6.39□□□□□ -1.39
VPS41-209ENST00000457055 LDHAL6BQ9BYZ2 381 aaPredicted RBP6.39□□□□□ -1.39
VPS41-209ENST00000457055 REV1Q9UBZ9 1251 aa6.39□□□□□ -1.39
VPS41-209ENST00000457055 KLHL3Q9UH77 587 aa6.39□□□□□ -1.39
VPS41-209ENST00000457055 THRAP3Q9Y2W1 955 aaKnown RBP6.39□□□□□ -1.39
VPS41-209ENST00000457055 IQSEC2Q5JU85 1478 aa6.39□□□□□ -1.39
VPS41-209ENST00000457055 KIF20AO95235 890 aa6.38□□□□□ -1.39
VPS41-209ENST00000457055 F13A1P00488 732 aa6.38□□□□□ -1.39
VPS41-209ENST00000457055 PF4P02776 101 aa6.38□□□□□ -1.39
VPS41-209ENST00000457055 CTSHP09668 335 aa6.38□□□□□ -1.39
VPS41-209ENST00000457055 ZNF131P52739 623 aa6.38□□□□□ -1.39
VPS41-209ENST00000457055 NR0B2Q15466 257 aa6.38□□□□□ -1.39
VPS41-209ENST00000457055 TTLL10Q6ZVT0 673 aa6.38□□□□□ -1.39
VPS41-209ENST00000457055 ZNF605Q86T29 641 aa6.38□□□□□ -1.39
VPS41-209ENST00000457055 SKAP1Q86WV1 359 aa6.38□□□□□ -1.39
VPS41-209ENST00000457055 RELL1Q8IUW5 271 aa6.38□□□□□ -1.39
VPS41-209ENST00000457055 KIAA1958Q8N8K9 716 aa6.38□□□□□ -1.39
VPS41-209ENST00000457055 BORCS6Q96GS4 357 aa6.38□□□□□ -1.39
VPS41-209ENST00000457055 INTS4Q96HW7 963 aaKnown RBP6.38□□□□□ -1.39
VPS41-209ENST00000457055 KREMEN1Q96MU8 473 aa6.38□□□□□ -1.39
VPS41-209ENST00000457055 FAM161BQ96MY7 647 aa6.38□□□□□ -1.39
VPS41-209ENST00000457055 ASPNQ9BXN1 380 aa6.38□□□□□ -1.39
VPS41-209ENST00000457055 CCSER2Q9H7U1 834 aa6.38□□□□□ -1.39
VPS41-209ENST00000457055 HDAC9Q9UKV0 1011 aa6.38□□□□□ -1.39
VPS41-209ENST00000457055 RABGAP1Q9Y3P9 1069 aa6.38□□□□□ -1.39
VPS41-209ENST00000457055 BIVM-ERCC5R4GMW8 1640 aa6.38□□□□□ -1.39
VPS41-209ENST00000457055 TTC37Q6PGP7 1564 aa6.37□□□□□ -1.39
VPS41-209ENST00000457055 DISP1Q96F81 1524 aa6.37□□□□□ -1.39
VPS41-209ENST00000457055 USP31Q70CQ4 1352 aa6.37□□□□□ -1.39
VPS41-209ENST00000457055 SHISA3A0PJX4 238 aa6.37□□□□□ -1.39
VPS41-209ENST00000457055 ERICH4A6NGS2 130 aa6.37□□□□□ -1.39
VPS41-209ENST00000457055 VAMP4O75379 141 aa6.37□□□□□ -1.39
VPS41-209ENST00000457055 CCDC175P0C221 793 aa6.37□□□□□ -1.39
VPS41-209ENST00000457055 DNAJA1P31689 397 aaKnown RBP6.37□□□□□ -1.39
VPS41-209ENST00000457055 AMPD3Q01432 767 aa6.37□□□□□ -1.39
VPS41-209ENST00000457055 CHRNEQ04844 493 aa6.37□□□□□ -1.39
VPS41-209ENST00000457055 DUSP4Q13115 394 aa6.37□□□□□ -1.39
VPS41-209ENST00000457055 SEPT2Q15019 361 aa6.37□□□□□ -1.39
VPS41-209ENST00000457055 E2F5Q15329 346 aa6.37□□□□□ -1.39
VPS41-209ENST00000457055 CLEC16AQ2KHT3 1053 aa6.37□□□□□ -1.39
VPS41-209ENST00000457055 IQCEQ6IPM2 695 aa6.37□□□□□ -1.39
VPS41-209ENST00000457055 OTUD6AQ7L8S5 288 aa6.37□□□□□ -1.39
VPS41-209ENST00000457055 TMC4Q7Z404 712 aa6.37□□□□□ -1.39
VPS41-209ENST00000457055 FERMT3Q86UX7 667 aa6.37□□□□□ -1.39
VPS41-209ENST00000457055 SPPL2CQ8IUH8 684 aa6.37□□□□□ -1.39
VPS41-209ENST00000457055 PHACTR4Q8IZ21 702 aa6.37□□□□□ -1.39
VPS41-209ENST00000457055 BAHD1Q8TBE0 780 aaPredicted RBP6.37□□□□□ -1.39
VPS41-209ENST00000457055 FRS2Q8WU20 508 aa6.37□□□□□ -1.39
VPS41-209ENST00000457055 MRFAP1L1Q96HT8 127 aa6.37□□□□□ -1.39
VPS41-209ENST00000457055 MPP4Q96JB8 637 aa6.37□□□□□ -1.39
VPS41-209ENST00000457055 CCDC74BQ96LY2 380 aa6.37□□□□□ -1.39
VPS41-209ENST00000457055 IWS1Q96ST2 819 aa6.37□□□□□ -1.39
VPS41-209ENST00000457055 IER2Q9BTL4 223 aa6.37□□□□□ -1.39
VPS41-209ENST00000457055 POLR3CQ9BUI4 534 aaPredicted RBP6.37□□□□□ -1.39
VPS41-209ENST00000457055 MCOLN1Q9GZU1 580 aa6.37□□□□□ -1.39
VPS41-209ENST00000457055 STK26Q9P289 416 aa6.37□□□□□ -1.39
VPS41-209ENST00000457055 RAPGEFL1Q9UHV5 662 aa6.37□□□□□ -1.39
VPS41-209ENST00000457055 GPR160Q9UJ42 338 aa6.37□□□□□ -1.39
VPS41-209ENST00000457055 PRKAB1Q9Y478 270 aa6.37□□□□□ -1.39
VPS41-209ENST00000457055 CEP83Q9Y592 693 aa6.37□□□□□ -1.39
VPS41-209ENST00000457055 EID1Q9Y6B2 187 aa6.37□□□□□ -1.39
VPS41-209ENST00000457055 PRR36Q9H6K5 1346 aa6.36□□□□□ -1.39
VPS41-209ENST00000457055 CHURC1-FNTBB4DL54 471 aa6.36□□□□□ -1.39
VPS41-209ENST00000457055 GRIN3BO60391 1043 aa6.36□□□□□ -1.39
VPS41-209ENST00000457055 HTR3BO95264 441 aa6.36□□□□□ -1.39
VPS41-209ENST00000457055 IPO7O95373 1038 aaKnown RBP6.36□□□□□ -1.39
VPS41-209ENST00000457055 RPN1P04843 607 aaKnown RBP6.36□□□□□ -1.39
VPS41-209ENST00000457055 INHBBP09529 407 aa6.36□□□□□ -1.39
VPS41-209ENST00000457055 ZNF132P52740 706 aa6.36□□□□□ -1.39
VPS41-209ENST00000457055 CHMP4BP1P59074 171 aa6.36□□□□□ -1.39
VPS41-209ENST00000457055 TEKQ02763 1124 aa6.36□□□□□ -1.39
VPS41-209ENST00000457055 TAF11Q15544 211 aa6.36□□□□□ -1.39
VPS41-209ENST00000457055 C16orf87Q6PH81 154 aa6.36□□□□□ -1.39
VPS41-209ENST00000457055 HDGFL2Q7Z4V5 671 aaPredicted RBP6.36□□□□□ -1.39
VPS41-209ENST00000457055 TTC30AQ86WT1 665 aa6.36□□□□□ -1.39
VPS41-209ENST00000457055 ANKS4BQ8N8V4 417 aa6.36□□□□□ -1.39
VPS41-209ENST00000457055 SMARCC1Q92922 1105 aaPredicted RBP6.36□□□□□ -1.39
VPS41-209ENST00000457055 SLC39A13Q96H72 371 aa6.36□□□□□ -1.39
VPS41-209ENST00000457055 CRELD1Q96HD1 420 aa6.36□□□□□ -1.39
VPS41-209ENST00000457055 RHOVQ96L33 236 aa6.36□□□□□ -1.39
VPS41-209ENST00000457055 MAP7D2Q96T17 732 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms