RNA–Protein interactions for RNA: ENST00000452162.5

PKP4-206, Transcript of plakophilin 4, humanhuman

TSL 1 (best)

Gene PKP4, Length 2,359 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-206ENST00000452162 GNA11P29992 359 aa12.08□□□□□ -0.47
PKP4-206ENST00000452162 PRPHP41219 470 aa12.08□□□□□ -0.47
PKP4-206ENST00000452162 CUL4BQ13620 913 aa12.08□□□□□ -0.47
PKP4-206ENST00000452162 TRMT44Q8IYL2 757 aaKnown RBP12.08□□□□□ -0.47
PKP4-206ENST00000452162 ZNF296Q8WUU4 475 aaPredicted RBP12.08□□□□□ -0.47
PKP4-206ENST00000452162 P2RX7Q99572 595 aaKnown RBP12.08□□□□□ -0.47
PKP4-206ENST00000452162 INTS13Q9NVM9 706 aa12.08□□□□□ -0.47
PKP4-206ENST00000452162 NFE2L3Q9Y4A8 694 aa12.08□□□□□ -0.47
PKP4-206ENST00000452162 ZSWIM8A7E2V4 1837 aa12.08□□□□□ -0.47
PKP4-206ENST00000452162 DOCK3Q8IZD9 2030 aa12.08□□□□□ -0.48
PKP4-206ENST00000452162 CENPFP49454 3210 aa12.08□□□□□ -0.48
PKP4-206ENST00000452162 F5H6K3 240 aa12.08□□□□□ -0.48
PKP4-206ENST00000452162 CD44P16070 742 aaKnown RBP12.08□□□□□ -0.48
PKP4-206ENST00000452162 IRX3P78415 501 aaPredicted RBP12.08□□□□□ -0.48
PKP4-206ENST00000452162 KLRC3Q07444 240 aa12.08□□□□□ -0.48
PKP4-206ENST00000452162 ZNF543Q08ER8 600 aa12.08□□□□□ -0.48
PKP4-206ENST00000452162 PABPC4Q13310 644 aaKnown RBP eCLIP12.08□□□□□ -0.48
PKP4-206ENST00000452162 DHX8Q14562 1220 aaKnown RBP12.08□□□□□ -0.48
PKP4-206ENST00000452162 DTHD1Q6ZMT9 781 aa12.08□□□□□ -0.48
PKP4-206ENST00000452162 CATSPERGQ6ZRH7 1159 aa12.08□□□□□ -0.48
PKP4-206ENST00000452162 SMCR8Q8TEV9 937 aaPredicted RBP12.08□□□□□ -0.48
PKP4-206ENST00000452162 LPAR1Q92633 364 aa12.08□□□□□ -0.48
PKP4-206ENST00000452162 NUP88Q99567 741 aaPredicted RBP12.08□□□□□ -0.48
PKP4-206ENST00000452162 VAT1LQ9HCJ6 419 aa12.08□□□□□ -0.48
PKP4-206ENST00000452162 GOPCQ9HD26 462 aa12.08□□□□□ -0.48
PKP4-206ENST00000452162 PNMA3Q9UL41 463 aa12.08□□□□□ -0.48
PKP4-206ENST00000452162 USP17L15C9J2P7 530 aa12.07□□□□□ -0.48
PKP4-206ENST00000452162 USP17L13C9JLJ4 530 aa12.07□□□□□ -0.48
PKP4-206ENST00000452162 USP17L11C9JVI0 530 aa12.07□□□□□ -0.48
PKP4-206ENST00000452162 USP17L18D6R9N7 530 aa12.07□□□□□ -0.48
PKP4-206ENST00000452162 USP17L22D6RA61 530 aa12.07□□□□□ -0.48
PKP4-206ENST00000452162 USP17L17D6RBQ6 530 aa12.07□□□□□ -0.48
PKP4-206ENST00000452162 USP17L19D6RCP7 530 aa12.07□□□□□ -0.48
PKP4-206ENST00000452162 USP17L20D6RJB6 530 aa12.07□□□□□ -0.48
PKP4-206ENST00000452162 GTPBP6O43824 516 aaPredicted RBP12.07□□□□□ -0.48
PKP4-206ENST00000452162 PEX10O60683 326 aa12.07□□□□□ -0.48
PKP4-206ENST00000452162 NDUFB10O96000 172 aa12.07□□□□□ -0.48
PKP4-206ENST00000452162 OSBPP22059 807 aa12.07□□□□□ -0.48
PKP4-206ENST00000452162 USP17L24Q0WX57 530 aa12.07□□□□□ -0.48
PKP4-206ENST00000452162 NONOQ15233 471 aaKnown RBP eCLIP12.07□□□□□ -0.481e-6■■■■□ 24.7
PKP4-206ENST00000452162 C17orf99Q6UX52 265 aa12.07□□□□□ -0.48
PKP4-206ENST00000452162 VSTM4Q8IW00 320 aa12.07□□□□□ -0.48
PKP4-206ENST00000452162 MYRIPQ8NFW9 859 aa12.07□□□□□ -0.48
PKP4-206ENST00000452162 KCND1Q9NSA2 647 aa12.07□□□□□ -0.48
PKP4-206ENST00000452162 PPP1R3GB7ZBB8 358 aa12.07□□□□□ -0.48
PKP4-206ENST00000452162 TMEM232C9JQI7 657 aa12.07□□□□□ -0.48
PKP4-206ENST00000452162 TXLNAP40222 546 aa12.07□□□□□ -0.48
PKP4-206ENST00000452162 CAP1Q01518 475 aa12.07□□□□□ -0.48
PKP4-206ENST00000452162 PDE4CQ08493 712 aa12.07□□□□□ -0.48
PKP4-206ENST00000452162 POTEEQ6S8J3 1075 aa12.07□□□□□ -0.48
PKP4-206ENST00000452162 STAMQ92783 540 aa12.07□□□□□ -0.48
PKP4-206ENST00000452162 TANGO6Q9C0B7 1094 aa12.07□□□□□ -0.48
PKP4-206ENST00000452162 DISC1Q9NRI5 854 aa12.07□□□□□ -0.48
PKP4-206ENST00000452162 COL11A1P12107 1806 aaPredicted RBP12.07□□□□□ -0.48
PKP4-206ENST00000452162 WDR46O15213 610 aaKnown RBP12.06□□□□□ -0.48
PKP4-206ENST00000452162 ECM2O94769 699 aaPredicted RBP12.06□□□□□ -0.48
PKP4-206ENST00000452162 BCRP11274 1271 aa12.06□□□□□ -0.48
PKP4-206ENST00000452162 HERVK_113P62684 666 aa12.06□□□□□ -0.48
PKP4-206ENST00000452162 KARSQ15046 597 aaKnown RBP12.06□□□□□ -0.48
PKP4-206ENST00000452162 FAM83BQ5T0W9 1011 aa12.06□□□□□ -0.48
PKP4-206ENST00000452162 REXO1Q8N1G1 1221 aaKnown RBP12.06□□□□□ -0.48
PKP4-206ENST00000452162 CCSER1Q9C0I3 900 aa12.06□□□□□ -0.48
PKP4-206ENST00000452162 GPCPD1Q9NPB8 672 aa12.06□□□□□ -0.48
PKP4-206ENST00000452162 MGAMO43451 1857 aa12.06□□□□□ -0.48
PKP4-206ENST00000452162 HTTP42858 3142 aa12.06□□□□□ -0.48
PKP4-206ENST00000452162 FKTNO75072 461 aa12.06□□□□□ -0.48
PKP4-206ENST00000452162 SFPQP23246 707 aaKnown RBP eCLIP12.06□□□□□ -0.486e-7■□□□□ 10.9
PKP4-206ENST00000452162 CDC25AP30304 524 aa12.06□□□□□ -0.48
PKP4-206ENST00000452162 SP3Q02447 781 aa12.06□□□□□ -0.48
PKP4-206ENST00000452162 ORC2Q13416 577 aaPredicted RBP12.06□□□□□ -0.48
PKP4-206ENST00000452162 NAALADL2Q58DX5 795 aa12.06□□□□□ -0.48
PKP4-206ENST00000452162 PPP4R3BQ5MIZ7 849 aa12.06□□□□□ -0.48
PKP4-206ENST00000452162 SPATA1Q5VX52 437 aa12.06□□□□□ -0.48
PKP4-206ENST00000452162 SLFN13Q68D06 897 aa12.06□□□□□ -0.48
PKP4-206ENST00000452162 NEK8Q86SG6 692 aa12.06□□□□□ -0.48
PKP4-206ENST00000452162 ANKRD13CQ8N6S4 541 aa12.06□□□□□ -0.48
PKP4-206ENST00000452162 GMCL1P1Q8NEA9 526 aa12.06□□□□□ -0.48
PKP4-206ENST00000452162 BLZF1Q9H2G9 400 aa12.06□□□□□ -0.48
PKP4-206ENST00000452162 JMJD4Q9H9V9 463 aa12.06□□□□□ -0.48
PKP4-206ENST00000452162 PRDM10Q9NQV6 1147 aa12.06□□□□□ -0.48
PKP4-206ENST00000452162 FBXO28Q9NVF7 368 aa12.06□□□□□ -0.48
PKP4-206ENST00000452162 SYNRGQ9UMZ2 1314 aa12.06□□□□□ -0.48
PKP4-206ENST00000452162 USP27XA6NNY8 438 aa12.05□□□□□ -0.48
PKP4-206ENST00000452162 PP2D1A8MPX8 630 aa12.05□□□□□ -0.48
PKP4-206ENST00000452162 OR52Z1P0C646 297 aa12.05□□□□□ -0.48
PKP4-206ENST00000452162 STAT6P42226 847 aa12.05□□□□□ -0.48
PKP4-206ENST00000452162 KCNJ6P48051 423 aa12.05□□□□□ -0.48
PKP4-206ENST00000452162 PPP1R18Q6NYC8 613 aa12.05□□□□□ -0.48
PKP4-206ENST00000452162 SAMD1Q6SPF0 538 aaPredicted RBP12.05□□□□□ -0.48
PKP4-206ENST00000452162 TXNRD2Q9NNW7 524 aa12.05□□□□□ -0.48
PKP4-206ENST00000452162 SAMSN1Q9NSI8 373 aaKnown RBP12.05□□□□□ -0.48
PKP4-206ENST00000452162 TMEM260Q9NX78 707 aa12.05□□□□□ -0.48
PKP4-206ENST00000452162 SYNPO2Q9UMS6 1093 aa12.05□□□□□ -0.48
PKP4-206ENST00000452162 SPDYE16A6NNV3 312 aaPredicted RBP12.05□□□□□ -0.48
PKP4-206ENST00000452162 PPP1R11O60927 126 aaPredicted RBP12.05□□□□□ -0.48
PKP4-206ENST00000452162 FLOT1O75955 427 aa12.05□□□□□ -0.48
PKP4-206ENST00000452162 ADCY7P51828 1080 aa12.05□□□□□ -0.48
PKP4-206ENST00000452162 TBX2Q13207 712 aaPredicted RBP12.05□□□□□ -0.48
PKP4-206ENST00000452162 TPD52L1Q16890 204 aaPredicted RBP12.05□□□□□ -0.48
PKP4-206ENST00000452162 LETM2Q2VYF4 491 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms